Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00064446 |
| length | 1005 |
| RNA type | mRNA |
| GC content | 0.52 |
| exon number | 8 |
| gene id | XLOC_033170 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007117.7 |
| NCBI id | CM002890.2 |
| chromosome length | 60270059 |
| location | 50021410 ~ 50204262 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0005634 | nucleus | cellular_component |
| GO:0003676 | nucleic acid binding | molecular_function |
| GO:0003723 | RNA binding | molecular_function |
| id | description |
|---|---|
| ko03041 | Spliceosome |
| id | description |
|---|---|
| ZDB-GENE-041010-127 | Predicted to enable RNA binding activity. Predicted to be active in nucleus. Is expressed in central nervous system; heart rudiment; and neurons. Orthologous to human RALY (RALY heterogeneous nuclear ribonucleoprotein). |
| ensembl_id | ENSDART00000143050 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00064441 | lncRNA | downstream | 100892 | 49918254 ~ 49926317 (-) | True | XLOC_033167 |
| TCONS_00064442 | lncRNA | downstream | 105352 | 49919936 ~ 49921857 (-) | True | XLOC_033168 |
| TCONS_00065232 | lncRNA | downstream | 255570 | 49763666 ~ 49771639 (-) | True | XLOC_033163 |
| TCONS_00065231 | lncRNA | downstream | 264269 | 49760355 ~ 49762940 (-) | False | XLOC_033163 |
| TCONS_00065230 | lncRNA | downstream | 704677 | 49320009 ~ 49322532 (-) | True | XLOC_033155 |
| TCONS_00065233 | lncRNA | upstream | 155975 | 50359657 ~ 50380212 (-) | True | XLOC_033172 |
| TCONS_00065234 | lncRNA | upstream | 254286 | 50457968 ~ 50476489 (-) | False | XLOC_033174 |
| TCONS_00064757 | lncRNA | upstream | 272531 | 50476213 ~ 50484398 (-) | False | XLOC_033174 |
| TCONS_00065235 | lncRNA | upstream | 276457 | 50480139 ~ 50486505 (-) | False | XLOC_033174 |
| TCONS_00065236 | lncRNA | upstream | 276457 | 50480139 ~ 50495883 (-) | False | XLOC_033174 |
| TCONS_00064443 | mRNA | downstream | 43880 | 49975910 ~ 49983329 (-) | True | XLOC_033169 |
| TCONS_00064439 | mRNA | downstream | 128328 | 49893488 ~ 49898881 (-) | False | XLOC_033166 |
| TCONS_00064438 | mRNA | downstream | 154189 | 49854260 ~ 49873020 (-) | True | XLOC_033165 |
| TCONS_00064437 | mRNA | downstream | 165703 | 49811831 ~ 49861506 (-) | False | XLOC_033165 |
| TCONS_00064436 | mRNA | downstream | 226036 | 49781884 ~ 49801173 (-) | True | XLOC_033164 |
| TCONS_00064448 | mRNA | upstream | 197938 | 50401620 ~ 50404732 (-) | True | XLOC_033173 |
| TCONS_00064449 | mRNA | upstream | 377258 | 50580940 ~ 50685862 (-) | False | XLOC_033175 |
| TCONS_00064451 | mRNA | upstream | 491699 | 50695381 ~ 50704689 (-) | True | XLOC_033176 |
| TCONS_00064452 | mRNA | upstream | 510118 | 50713800 ~ 50730749 (-) | False | XLOC_033177 |
| TCONS_00064453 | mRNA | upstream | 510676 | 50714358 ~ 50730749 (-) | True | XLOC_033177 |
| TCONS_00064440 | other | downstream | 125069 | 49893488 ~ 49902140 (-) | True | XLOC_033166 |
| TCONS_00064417 | other | downstream | 868115 | 49116019 ~ 49159094 (-) | True | XLOC_033153 |
| TCONS_00064412 | other | downstream | 1415059 | 48612034 ~ 48612150 (-) | True | XLOC_033148 |
| TCONS_00064408 | other | downstream | 1645986 | 48380245 ~ 48381223 (-) | True | XLOC_033145 |
| TCONS_00064395 | other | downstream | 2424494 | 47602599 ~ 47602715 (-) | True | XLOC_033138 |
| TCONS_00064450 | other | upstream | 381820 | 50585502 ~ 50587730 (-) | True | XLOC_033175 |
| TCONS_00064454 | other | upstream | 538633 | 50742315 ~ 50744929 (-) | False | XLOC_033178 |
| TCONS_00064455 | other | upstream | 540478 | 50744160 ~ 50745255 (-) | False | XLOC_033178 |
| TCONS_00064456 | other | upstream | 540483 | 50744165 ~ 50747545 (-) | True | XLOC_033178 |
| TCONS_00064457 | other | upstream | 550819 | 50754501 ~ 50756448 (-) | True | XLOC_033179 |
