RNA id: TCONS_00064448


Basic Information

Item Value
RNA id TCONS_00064448
length 954
RNA type mRNA
GC content 0.41
exon number 3
gene id XLOC_033173
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 50401620 ~ 50404732 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTGGCACTTCCTCTCAAGTAATGGCGTCCGTGTGAAACAGTCCTATCGCAAACATTGAGCTAGGTTGTCACAAAAACTAACCAACAGGGCCACTAAAATAGCGATTTGAACAAGATGCCGGTGAGTGTAGGATCGTACGGACAGCAGGCTCAGCCCAGCTGCTTTGACAGAGTCAAGATGGGCTTCATGATGGGCTTTGCTGTAGGAATGGCTGCAGGTGCCATGTTTGGGACTTTCTCCTGTCTCAGGATTGGCATGCGGGGTCGAGAGTTGATGGGCGGAGTTGGGAAGACGATGATGCAAAGCGGTGGTACGTTTGGGACCTTCATGGCGATTGGGATGGGAATCCGCTGCTGAGATCACACTAATGCCACTCAAGTAATAGGACTTTGAAGCATTTTCCATTCACCCGTTTGTTATCACACCCAGATTCAAGGACATCGGTGTTAATAAAGagtaatagaaatgtttttttttctgtaaatctcTAAGGCTCAAATGTAAGACCTGATTGTTGATCGATAATGACAGCCCTACTTTTTATTGGAGTTCACCAGAACAGGTTAAAGTCAACTTAAATGACCTTTCTGCAGTTTACGGAGGGCTTACAATGAAGAAGggctatttattttgaaaaacaacgTTGTTTGAAACACATTTTAAGTTTAAGCATGACAATAAGAAATAGCACACACTTACCTTGAGGTGCTGCTACATTAGTATCATCTAAGGGGTTGACAATTCCAGGATAGTCTTTGCCAAATGAAAGATGTTTGATGAAATGTGTCATGTTGATCTGtggtcaaacaaaacaaaatcattaaaTTTTGGTCTAATATTCTGAGCAAACACAAGAGCAATCTTATTGAAGAAGAGAACTGAACAACTCACATTGTCTAGGCCAAAGCTTTGCAGATCATGAactgaaaataaagcaaattgaAAAATATGAA

Function

GO:

id name namespace
GO:0001302 obsolete replicative cell aging biological_process
GO:0030150 protein import into mitochondrial matrix biological_process
GO:0042742 defense response to bacterium biological_process
GO:0008284 positive regulation of cell population proliferation biological_process
GO:0034614 cellular response to reactive oxygen species biological_process
GO:2000379 positive regulation of reactive oxygen species metabolic process biological_process
GO:0045039 protein insertion into mitochondrial inner membrane biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005744 TIM23 mitochondrial import inner membrane translocase complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005739 mitochondrion cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1768 Predicted to be involved in several processes, including positive regulation of reactive oxygen species metabolic process; protein targeting to mitochondrion; and replicative senescence. Predicted to act upstream of or within defense response to bacterium. Predicted to be located in mitochondrion. Predicted to be part of TIM23 mitochondrial import inner membrane translocase complex. Is expressed in several structures, including alar plate midbrain region; liver; optic tectum; optic vesicle; and retina. Orthologous to human ROMO1 (reactive oxygen species modulator 1).

Ensembl:

ensembl_id ENSDART00000055510

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065233 lncRNA downstream 21408 50359657 ~ 50380212 (-) True XLOC_033172
TCONS_00064441 lncRNA downstream 475303 49918254 ~ 49926317 (-) True XLOC_033167
TCONS_00064442 lncRNA downstream 479763 49919936 ~ 49921857 (-) True XLOC_033168
TCONS_00065232 lncRNA downstream 629981 49763666 ~ 49771639 (-) True XLOC_033163
TCONS_00065231 lncRNA downstream 638680 49760355 ~ 49762940 (-) False XLOC_033163
TCONS_00065234 lncRNA upstream 53236 50457968 ~ 50476489 (-) False XLOC_033174
TCONS_00064757 lncRNA upstream 71481 50476213 ~ 50484398 (-) False XLOC_033174
TCONS_00065235 lncRNA upstream 75407 50480139 ~ 50486505 (-) False XLOC_033174
TCONS_00065236 lncRNA upstream 75407 50480139 ~ 50495883 (-) False XLOC_033174
TCONS_00065237 lncRNA upstream 90890 50495622 ~ 50505438 (-) True XLOC_033174
TCONS_00064444 mRNA downstream 197358 50021410 ~ 50204262 (-) False XLOC_033170
TCONS_00064445 mRNA downstream 197938 50022150 ~ 50203682 (-) False XLOC_033170
TCONS_00064446 mRNA downstream 197938 50027209 ~ 50203682 (-) True XLOC_033170
TCONS_00064443 mRNA downstream 418291 49975910 ~ 49983329 (-) True XLOC_033169
TCONS_00064439 mRNA downstream 502739 49893488 ~ 49898881 (-) False XLOC_033166
TCONS_00064449 mRNA upstream 176208 50580940 ~ 50685862 (-) False XLOC_033175
TCONS_00064451 mRNA upstream 290649 50695381 ~ 50704689 (-) True XLOC_033176
TCONS_00064452 mRNA upstream 309068 50713800 ~ 50730749 (-) False XLOC_033177
TCONS_00064453 mRNA upstream 309626 50714358 ~ 50730749 (-) True XLOC_033177
TCONS_00064458 mRNA upstream 605249 51009981 ~ 51101834 (-) False XLOC_033180
TCONS_00064447 other downstream 266183 50135319 ~ 50135437 (-) True XLOC_033171
TCONS_00064440 other downstream 499480 49893488 ~ 49902140 (-) True XLOC_033166
TCONS_00064417 other downstream 1242526 49116019 ~ 49159094 (-) True XLOC_033153
TCONS_00064412 other downstream 1789470 48612034 ~ 48612150 (-) True XLOC_033148
TCONS_00064408 other downstream 2020397 48380245 ~ 48381223 (-) True XLOC_033145
TCONS_00064450 other upstream 180770 50585502 ~ 50587730 (-) True XLOC_033175
TCONS_00064454 other upstream 337583 50742315 ~ 50744929 (-) False XLOC_033178
TCONS_00064455 other upstream 339428 50744160 ~ 50745255 (-) False XLOC_033178
TCONS_00064456 other upstream 339433 50744165 ~ 50747545 (-) True XLOC_033178
TCONS_00064457 other upstream 349769 50754501 ~ 50756448 (-) True XLOC_033179

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU567552 True 1228 lncRNA 0.40 3 CI01000340 14754883 ~ 14756719 (-)
striped catfish (Pangasianodon hypophthalmus) TU26421 False 494 TUCP 0.48 3 NC_047596.1 5534124 ~ 5536060 (-)
bowfin (Amia calva) AMCG00007952 True 935 mRNA 0.55 3 CM030123.1 38168621 ~ 38170146 (+)