RNA id: TCONS_00064451


Basic Information

Item Value
RNA id TCONS_00064451
length 1820
RNA type mRNA
GC content 0.50
exon number 6
gene id XLOC_033176
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 50695381 ~ 50704689 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGCTGAAGAGTGCCGTATCTCTCCTAGCAGCCACGCTTGAAGCACAGCGAGAGGAAACTGCGTATTTCACCTCTCGGTTTATATTATCTTCATCTCTTGTAAATTTAAGGCTTTGCTGTCTCTCGACTTATTCGGAGCATTTACATTACAGGTTAGCCACTATGGAGCTGTACAATAAAGACACCTTTTCTGACGATATCCTGCCTGTTGTCATTGTTGGTAATGGACCATCCGGGATTTGTCTTTCTTATTTGTTGTCGGGATACACCCCTTACCTTTCCCCCGATGGTTTCCATCCCAACCAGATTTTGCATGACAAACTGACAAAGAACCCTCATCTGTCTTTGTTTGACCAGGATCTGGAGTACTTGTGTGAGGGTGTAGAGGGCCGCTCATCCAACCCTGTGGCTGTGCTCTTCGATGCCCTCCTCCTTCCAGATGGTGACTTTGGGGTGGATTGTGCTTCCCCACTGATATGGAGACATGAGCCGGAAAGGGCCACACCGCACCTCGTACTTGGAAAAGGACCACCTGGAGGGGCCTGGCATGCGATGGAAGGCTCAATGTTGACTCTCAGTCTGGCTAACTGGATGGAGCTTCCTGGTTTGAAGCTGAAAGACTGGATGAGAGATAAACGAAGgaATTTACGTAATGACCGGGCTACTCCTGCTGAGATTGCCTCATACTACCAGCACTACGTGACAAAAATGGGTCTGGAGAAGAGTTTCGCTTGTGGCACCACTGTAACCTCAGTTTCTCGAGTTTCCCTTAAATCCGGTCGCTCCATATGGAAGATCCAAGGCCTCCAGAGAAGAGCAAATGTTAATGAAGAACATGAAGTCCCTTTCTCTGTGTATGCCGAGAACGTGGTGCTTGCAACAGGAACGCATGACATTCCAGCTCGCCTTGGCGTAGATGGTGAAAACCTTCCCTATGTGTGCCACAGCTTCTGGGAGCTGGAGGCTGCCATCTCTTCAGGCCGCTTGGACCGTGCTTCAGAGCCGGTTCTTATTGTCGGCGCTGGGTTAACGGCAGCAGATGCTGTTCTCGCAGCTCACCACTTAAACACACCGGTTTACCATGCCTTCCGGCGGCCGGTAAGCGATCCAGCGCTCATCTTCAACCAGCTACCCAAACTCCTCTACCCAGAGTACCACAAAGTGCATCAAATGATGAGCCAACAGCAACACAAAGTTGGAGAGACTGTGGAAAATCTGTCCAACCAACTGCTCTCGTCGCCTGCAGACGGCACCAGTTCTTACACCTGCTACCCAGGTTACCTCAGTTTCCCAAAGCACCGTGTGGCAGCATTCAAACCTGATGGCAAGTGTGTGCTGGAGGGCGAAGGAGGGCTGCAGACGGTGCTCCAAGTCTCAATGGCACTCGTTTTGATTGGTGCCCATCCAAACCTGTCTTTCCTTCCAGAACACGGTCGCGATTTGGCGTTGGACTCGGAAGAGCCAATCAGCTGTCGGCGGAATCCGATGGATGTAGATCCGTACACTTATGAGAGCATAAAGGAGGCAGGGTTGTATGCCATGGGTCCATTAGTGGGTGAAAACTTTGTGCGCTTCTTGAAAGGTGGAGCTTTGGCCATTGCTTGTGACATTGCGCGGAAGCAGAGTGCAAAACGACAAAGTGCGACAGAGAACTGCATCACCAGCTTGATGAACATTCAGCTCACCAACTGCACCTTGGAAGCGTGAAaagattttaattattctttgtgGGACTTCCAAAGTCCACAAACTGACTTCTAAATGCGATTCTGCACCAATGAATGGTTAAACCAATCAGCAATGGGCTGAGACTGTTCCGA

Function

GO:

id name namespace
GO:0043065 positive regulation of apoptotic process biological_process
GO:0030308 negative regulation of cell growth biological_process
GO:0005575 cellular_component cellular_component
GO:0008083 growth factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-864 Predicted to enable growth factor activity. Predicted to be involved in negative regulation of cell growth. Predicted to act upstream of or within positive regulation of apoptotic process. Is expressed in several structures, including anterior axial hypoblast; neural plate; periderm; pleuroperitoneal region; and polster.

Ensembl:

ensembl_id ENSDART00000074100

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065237 lncRNA downstream 189943 50495622 ~ 50505438 (-) True XLOC_033174
TCONS_00065236 lncRNA downstream 199498 50480139 ~ 50495883 (-) False XLOC_033174
TCONS_00065235 lncRNA downstream 208876 50480139 ~ 50486505 (-) False XLOC_033174
TCONS_00064757 lncRNA downstream 210983 50476213 ~ 50484398 (-) False XLOC_033174
TCONS_00065234 lncRNA downstream 218892 50457968 ~ 50476489 (-) False XLOC_033174
TCONS_00065238 lncRNA upstream 824074 51528763 ~ 51538548 (-) False XLOC_033181
TCONS_00065239 lncRNA upstream 1321802 52026491 ~ 52034656 (-) True XLOC_033186
TCONS_00064474 lncRNA upstream 1527062 52231751 ~ 52234719 (-) False XLOC_033188
TCONS_00064475 lncRNA upstream 1527173 52231862 ~ 52234719 (-) False XLOC_033188
TCONS_00064476 lncRNA upstream 1529052 52233741 ~ 52234648 (-) True XLOC_033188
TCONS_00064449 mRNA downstream 9519 50580940 ~ 50685862 (-) False XLOC_033175
TCONS_00064448 mRNA downstream 290649 50401620 ~ 50404732 (-) True XLOC_033173
TCONS_00064444 mRNA downstream 491119 50021410 ~ 50204262 (-) False XLOC_033170
TCONS_00064445 mRNA downstream 491699 50022150 ~ 50203682 (-) False XLOC_033170
TCONS_00064446 mRNA downstream 491699 50027209 ~ 50203682 (-) True XLOC_033170
TCONS_00064452 mRNA upstream 9111 50713800 ~ 50730749 (-) False XLOC_033177
TCONS_00064453 mRNA upstream 9669 50714358 ~ 50730749 (-) True XLOC_033177
TCONS_00064458 mRNA upstream 305292 51009981 ~ 51101834 (-) False XLOC_033180
TCONS_00064461 mRNA upstream 316229 51020918 ~ 51386696 (-) False XLOC_033180
TCONS_00064460 mRNA upstream 316229 51020918 ~ 51386696 (-) False XLOC_033180
TCONS_00064450 other downstream 107651 50585502 ~ 50587730 (-) True XLOC_033175
TCONS_00064447 other downstream 559944 50135319 ~ 50135437 (-) True XLOC_033171
TCONS_00064440 other downstream 793241 49893488 ~ 49902140 (-) True XLOC_033166
TCONS_00064417 other downstream 1536287 49116019 ~ 49159094 (-) True XLOC_033153
TCONS_00064412 other downstream 2083231 48612034 ~ 48612150 (-) True XLOC_033148
TCONS_00064454 other upstream 37626 50742315 ~ 50744929 (-) False XLOC_033178
TCONS_00064455 other upstream 39471 50744160 ~ 50745255 (-) False XLOC_033178
TCONS_00064456 other upstream 39476 50744165 ~ 50747545 (-) True XLOC_033178
TCONS_00064457 other upstream 49812 50754501 ~ 50756448 (-) True XLOC_033179
TCONS_00064464 other upstream 826317 51531006 ~ 51541488 (-) True XLOC_033181

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000340_14894726_14899916.mRNA True 3026 mRNA 0.46 7 CI01000340 14893593 ~ 14899916 (-)