RNA id: TCONS_00064408


Basic Information

Item Value
RNA id TCONS_00064408
length 812
RNA type processed_transcript
GC content 0.31
exon number 2
gene id XLOC_033145
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 48380245 ~ 48381223 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGCCACCATCAGTGTTTTAATGTTGCATCGCATGTAATGTTGCGTGCATTTGGCCATGAGATTTTTGACATAAATCGTAGCTATTTATGCAGACTTGTGCTTTTGTAGATTTTATCAGCTGGTTTAGAAGTCAGAtagtgatgtcacttcctctgcTTGGTGCCATGAGGTGGTACACCATACATAAATCCAGCCCTGTGTTTACTGGTTGAGTGAGTGGTGATTTTATTAGCATGGTGTAGCTATTTCACTTGTAAAAGAATGCAGCAAAATGTGTTTTGGGTCATGTGgcatgacaaattaaaaaagaaaaacagcttgCAATAAGAATGGAAAGAGATTTGGAGATATACACAAGCATacacatattaaaataattaaaagaccaCTTGAAAATTTGGATTTTCTCAAAAATCTTCaagtttttaaacttatttttgttctgttgacatgTCTTTCTAATTTAAAGcacaaatgttgtcaattagatCATTGCTTATAAAGATAAAAAGCTGCCATTTTTTTCAGATGTGTATTATTAATATCtaaacaacaagaacaaaaaatGCTATAAGAATGGtagtgttattaaaaaaaattggatGAGATGCTATTAGgctacaggaacttgaACTGACACCTGTGTATTAGACAAAAGTGAAACAAATACATATGTTGTACTCAAACACACCCAATAAATCCTTTAAAATGTAAGtggtctttaaaatatttttacctagctgtatatttatacatttaatgtgTCAAAGACAAAAGTGATTTTTATAAAttgtcaaaatataattttttt

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000155755

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064756 lncRNA downstream 318586 48046286 ~ 48061659 (-) True XLOC_033141
TCONS_00064401 lncRNA downstream 318721 47979305 ~ 48061524 (-) False XLOC_033141
TCONS_00065223 lncRNA downstream 328655 47979305 ~ 48051590 (-) False XLOC_033141
TCONS_00064398 lncRNA downstream 541873 47835353 ~ 47838372 (-) True XLOC_033139
TCONS_00064380 lncRNA downstream 1808816 46568134 ~ 46571429 (-) True XLOC_033127
TCONS_00065224 lncRNA upstream 533645 48914868 ~ 48949493 (-) False XLOC_033149
TCONS_00065225 lncRNA upstream 541364 48922587 ~ 48949515 (-) True XLOC_033149
TCONS_00065226 lncRNA upstream 719656 49100879 ~ 49104192 (-) True XLOC_033152
TCONS_00064425 lncRNA upstream 929685 49310908 ~ 49322485 (-) False XLOC_033155
TCONS_00065227 lncRNA upstream 938786 49320009 ~ 49322485 (-) False XLOC_033155
TCONS_00064406 mRNA downstream 32521 48322250 ~ 48347724 (-) False XLOC_033144
TCONS_00064407 mRNA downstream 32747 48347424 ~ 48347498 (-) True XLOC_033144
TCONS_00064405 mRNA downstream 62683 48290125 ~ 48317562 (-) True XLOC_033143
TCONS_00064402 mRNA downstream 285903 48068695 ~ 48094342 (-) False XLOC_033142
TCONS_00064404 mRNA downstream 293093 48068770 ~ 48087152 (-) True XLOC_033142
TCONS_00064409 mRNA upstream 1474 48382697 ~ 48418021 (-) True XLOC_033146
TCONS_00064410 mRNA upstream 44143 48425366 ~ 48473694 (-) False XLOC_033147
TCONS_00064411 mRNA upstream 45426 48426649 ~ 48473395 (-) True XLOC_033147
TCONS_00064413 mRNA upstream 679854 49061077 ~ 49063085 (-) True XLOC_033150
TCONS_00064414 mRNA upstream 682066 49063289 ~ 49078263 (-) False XLOC_033151
TCONS_00064395 other downstream 777530 47602599 ~ 47602715 (-) True XLOC_033138
TCONS_00064391 other downstream 1223829 47156302 ~ 47156416 (-) True XLOC_033135
TCONS_00064371 other downstream 2128305 46168017 ~ 46251940 (-) True XLOC_033121
TCONS_00064372 other downstream 2152013 46228117 ~ 46228232 (-) True XLOC_033122
TCONS_00064360 other downstream 4100031 44254721 ~ 44280214 (-) True XLOC_033114
TCONS_00064412 other upstream 230811 48612034 ~ 48612150 (-) True XLOC_033148
TCONS_00064417 other upstream 734796 49116019 ~ 49159094 (-) True XLOC_033153
TCONS_00064440 other upstream 1512265 49893488 ~ 49902140 (-) True XLOC_033166
TCONS_00064447 other upstream 1754096 50135319 ~ 50135437 (-) True XLOC_033171
TCONS_00064450 other upstream 2204279 50585502 ~ 50587730 (-) True XLOC_033175

Expression Profile

//