RNA id: TCONS_00064438


Basic Information

Item Value
RNA id TCONS_00064438
length 669
RNA type mRNA
GC content 0.54
exon number 3
gene id XLOC_033165
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 49811831 ~ 49873020 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGAGCGAGCGAGAAGCGGACGAGGAGGGACTTGGAGCGGCGTCCAGAAATAGTAGAGCAAGAATAACAAACAGTGAAAAGTGCGCTATGTGTGTCAGGTCAAAGTTCACTCCTGTCAATACCAGAACCTGAGGGGGAAAAGCCGATGCGGCTAAACGACACCTTTGGAAAGCCTGAGCGGTAATGCTGTAAGGGATAGCGAGCCTTTCTCTCCACCTGACCTGGAtaaccaccatcatcatcatcaccatcttcatcatcatcatcatcatggtgTTCTTATCCTTCAAGACTTTCCTATACGGATGTTAAACAGCAAGCATTGGTCATGGGGATGTGCCACAGCTTCAGATCTCGGTTATCAGAATCGGCGATCACGTACACGGGCGGCCGTAGCGCAGCGGGCGCGGGGATCGATGCGGAGTCGGGCGGCCACTCGGACAGCTGTGACCCGCAGCTCAGAGAGCGGCGGCGGGCGGAGGAGCGGGCGCGGGTCAAGGCGGAGAACAAGCGGAGCAGAAACATTGACAAGAGCCTGAAGGCGGAGAAGAGAGAGTACAAGCAGACGCACAGGCTGCTCTTATTAGGGGCTGGAGAATCGGGGAAAAGCACCATAGTCAAACAGATGCGCATTTTACATGTCAATGGCTTCAATGCTGAagAGAAAAAA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007188 adenylate cyclase-modulating G protein-coupled receptor signaling pathway biological_process
GO:0007191 adenylate cyclase-activating dopamine receptor signaling pathway biological_process
GO:0007606 sensory perception of chemical stimulus biological_process
GO:0007165 signal transduction biological_process
GO:0005834 heterotrimeric G-protein complex cellular_component
GO:0035255 ionotropic glutamate receptor binding molecular_function
GO:0051430 corticotropin-releasing hormone receptor 1 binding molecular_function
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0019001 guanyl nucleotide binding molecular_function
GO:0005159 insulin-like growth factor receptor binding molecular_function
GO:0031852 mu-type opioid receptor binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0031683 G-protein beta/gamma-subunit complex binding molecular_function
GO:0031698 beta-2 adrenergic receptor binding molecular_function
GO:0001664 G protein-coupled receptor binding molecular_function
GO:0031748 D1 dopamine receptor binding molecular_function

KEGG:

id description
ko04015 Rap1 signaling pathway
ko04020 Calcium signaling pathway
ko04072 Phospholipase D signaling pathway
ko04024 cAMP signaling pathway
ko04540 Gap junction
ko04611 Platelet activation
ko04911 Insulin secretion
ko04922 Glucagon signaling pathway
ko04923 Regulation of lipolysis in adipocytes
ko04912 GnRH signaling pathway
ko04913 Ovarian steroidogenesis
ko04915 Estrogen signaling pathway
ko04921 Oxytocin signaling pathway
ko04926 Relaxin signaling pathway
ko04935 Growth hormone synthesis, secretion and action
ko04918 Thyroid hormone synthesis
ko04928 Parathyroid hormone synthesis, secretion and action
ko04916 Melanogenesis
ko04924 Renin secretion
ko04925 Aldosterone synthesis and secretion
ko04927 Cortisol synthesis and secretion
ko04261 Adrenergic signaling in cardiomyocytes
ko04270 Vascular smooth muscle contraction
ko04970 Salivary secretion
ko04971 Gastric acid secretion
ko04972 Pancreatic secretion
ko04976 Bile secretion
ko04962 Vasopressin-regulated water reabsorption
ko04961 Endocrine and other factor-regulated calcium reabsorption
ko04724 Glutamatergic synapse
ko04728 Dopaminergic synapse
ko04726 Serotonergic synapse
ko04730 Long-term depression
ko04750 Inflammatory mediator regulation of TRP channels
ko04361 Axon regeneration
ko04713 Circadian entrainment
ko04714 Thermogenesis
ko05200 Pathways in cancer
ko05207 Chemical carcinogenesis - receptor activation
ko05163 Human cytomegalovirus infection
ko05165 Human papillomavirus infection
ko05110 Vibrio cholerae infection
ko05146 Amoebiasis
ko05142 Chagas disease
ko05012 Parkinson disease
ko05030 Cocaine addiction
ko05031 Amphetamine addiction
ko05032 Morphine addiction
ko05034 Alcoholism
ko05414 Dilated cardiomyopathy
ko04934 Cushing syndrome
ko01522 Endocrine resistance
ko04147 Exosome
ko04031 GTP-binding proteins

ZFIN:

id description
ZDB-GENE-090417-2 Predicted to enable G-protein beta/gamma-subunit complex binding activity; GTPase activity; and signaling receptor binding activity. Predicted to be involved in adenylate cyclase-activating dopamine receptor signaling pathway and sensory perception of chemical stimulus. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be part of heterotrimeric G-protein complex. Is expressed in brain; gill; head; heart; and olfactory epithelium. Human ortholog(s) of this gene implicated in several diseases, including ACTH-independent macronodular adrenal hyperplasia 1; McCune Albright syndrome; pituitary adenoma 3; progressive osseous heteroplasia; and pseudohypoparathyroidism (multiple). Orthologous to human GNAS (GNAS complex locus).

Ensembl:

ensembl_id ENSDART00000148511

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065232 lncRNA downstream 82621 49763666 ~ 49771639 (-) True XLOC_033163
TCONS_00065231 lncRNA downstream 91320 49760355 ~ 49762940 (-) False XLOC_033163
TCONS_00065230 lncRNA downstream 531728 49320009 ~ 49322532 (-) True XLOC_033155
TCONS_00065229 lncRNA downstream 531736 49320009 ~ 49322524 (-) False XLOC_033155
TCONS_00064426 lncRNA downstream 531747 49320009 ~ 49322513 (-) False XLOC_033155
TCONS_00064441 lncRNA upstream 45234 49918254 ~ 49926317 (-) True XLOC_033167
TCONS_00064442 lncRNA upstream 46916 49919936 ~ 49921857 (-) True XLOC_033168
TCONS_00065233 lncRNA upstream 486637 50359657 ~ 50380212 (-) True XLOC_033172
TCONS_00065234 lncRNA upstream 584948 50457968 ~ 50476489 (-) False XLOC_033174
TCONS_00064757 lncRNA upstream 603193 50476213 ~ 50484398 (-) False XLOC_033174
TCONS_00064436 mRNA downstream 53087 49781884 ~ 49801173 (-) True XLOC_033164
TCONS_00064435 mRNA downstream 85160 49761229 ~ 49769100 (-) False XLOC_033163
TCONS_00064434 mRNA downstream 180784 49650876 ~ 49673476 (-) True XLOC_033162
TCONS_00064433 mRNA downstream 198381 49650170 ~ 49655879 (-) False XLOC_033162
TCONS_00064432 mRNA downstream 219473 49628431 ~ 49634787 (-) True XLOC_033161
TCONS_00064439 mRNA upstream 20468 49893488 ~ 49898881 (-) False XLOC_033166
TCONS_00064443 mRNA upstream 102890 49975910 ~ 49983329 (-) True XLOC_033169
TCONS_00064444 mRNA upstream 148390 50021410 ~ 50204262 (-) False XLOC_033170
TCONS_00064445 mRNA upstream 149130 50022150 ~ 50203682 (-) False XLOC_033170
TCONS_00064446 mRNA upstream 154189 50027209 ~ 50203682 (-) True XLOC_033170
TCONS_00064417 other downstream 695166 49116019 ~ 49159094 (-) True XLOC_033153
TCONS_00064412 other downstream 1242110 48612034 ~ 48612150 (-) True XLOC_033148
TCONS_00064408 other downstream 1473037 48380245 ~ 48381223 (-) True XLOC_033145
TCONS_00064395 other downstream 2251545 47602599 ~ 47602715 (-) True XLOC_033138
TCONS_00064391 other downstream 2697844 47156302 ~ 47156416 (-) True XLOC_033135
TCONS_00064440 other upstream 20468 49893488 ~ 49902140 (-) True XLOC_033166
TCONS_00064447 other upstream 262299 50135319 ~ 50135437 (-) True XLOC_033171
TCONS_00064450 other upstream 712482 50585502 ~ 50587730 (-) True XLOC_033175
TCONS_00064454 other upstream 869295 50742315 ~ 50744929 (-) False XLOC_033178
TCONS_00064455 other upstream 871140 50744160 ~ 50745255 (-) False XLOC_033178

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU567161 True 545 lncRNA 0.52 1 CI01000340 14506648 ~ 14507192 (+)