XLOC_003320 (ap1s2)


Basic Information

Item Value
gene id XLOC_003320
gene name ap1s2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 12719944 ~ 12728353 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006495
ATCTAGCAAAAGGGCGATGATGCGTCCATGTAACGGGACTCCTCACATCTGCGTTTACTGCCATCAGCCACAAAGCTCATGCTGCTCACGGGAACGAGTGTAAAATAAACTTGAAGaTGCAGTTCATGCTGCTTTTTAGCAGGCAGGGAAAGCTGCGGCTTCAGAAATGGTACGTGCCGTTGTCTGACACACAGAAGAAGAAAATCTCCCGTGAGGTCATTCAGATGGTGCTGGCACGCAAACCTAAAATGTGCAGCTTCCTGGAATGGAGGGATTTGAAGATCGTCTATAAAAGATATGCCAGCCTGTACTTTTGCTGTGCTGTGGAGGACCAGGAAAATGAGTTGATAACTCTGGAGATCATCCACCGATACGTGGAGCTGCTGGACAAGTATTTTGGCAGTGTGTGTGAGCTGGACATTATCTTCAACTTTGAGAAAGCCTATTACATTCTGGATGAGTTTATACTGGGCGGTGAAGCCCAAGAGACATCGAAGAAGAACGTTCTAAAGGCCATAGAGCAAGCGGACATGCTGCAGGAGGAAGCCGAGACACCACGTAGTGTTCTGGAAGAGATTGGACTGACATAAATGTCGAGAGCACATCCTACTCCAAACGCATCTTACTGTCTTTTTTTCTGTGGGCATTTTCTCCAAGTCTGTATTTTAGGTTAGCTTGCAGGCTAAAGTAGTGTTTAACATAATCAACACTTCCAGCATTACCCATATAGACTCTTGTATTTCTACTGCCAAACATCTGAGGGAATCGAGCACATGGAAATATTAATCTCAGCAGTTATGCAAATTCCCCATAGCGTTCGACTGTTTGGATTAGAATGCGTGTAGCAAAGATTAGCGTTAGCATTAGCATCCCCACAACTTTCCATCTTCTCTGATTTCAAACATTACCTCTCACCTTCAGCTGCCTTAAAACACTCATCTCCAGCTCACACTGTAACTTATGCAACTCTCTGTAGTTCCAAGTCAGCAGTTCTATACTGAGATTTGCTGAAGTGTTACGGACCAAACCATTTATTTCGCTTCAAAGGGGAACCCTAGATAATGTAAGCTGAACACTTAGACTTTTAAGGGATAAATTGTATTAACTAAGGCACAAGTAAACACAACAGTATTAGTAAATTCTTGACCAAAAACACTGTAATAATTTATTCCTGTTAACATAATTGGTATTTgccttttaaagagatagttcacccaaaaatgaaaattttcttaTCCTCCAttttgttccaaacatgtttgaatttcttcttaaacacaaatgaagatattttgaagaaagccttCGACTTGGTATTTGTTTCTCCTATTATGAGTGTCAATAGCTACAGGCtttttagcattcttcagaatatctctatttgtgttcaacagattaaagaaactcataaaggtttggaagcacttgaggatggataaactgaataaattttcatttctggggTGATCTATGCCCTTTGAACCACTGTTTTATTTTCAATGCCAAAGAATCTTCTCCACCATCTTCATGCCTTTTTCccttaaattcatctttattttgtttgactTTGATTCTCTGACGTCCTGTTGAGGACACGTGTCTTTTGAAGCTCtatataaacaagaataaaagtcAGATGATTGCAGCATGTTGTCCAATCTTTGGCAATATCTTACTAATaaagaatataattaaatatg
>TCONS_00006496
ACATCTGCGTTTACTGCCATCAGCCACAAAGCTCATGCTGCTCACGGGAACGAGTGTAAAATAAACTTGAAGaTGCAGTTCATGCTGCTTTTTAGCAGGCAGGGAAAGCTGCGGCTTCAGAAATGGTACGTGCCGTTGTCTGACACACAGAAGAAGAAAATCTCCCGTGAGGTCATTCAGATGGTGCTGGCACGCAAACCTAAAATGTGCAGCTTCCTGGAATGGAGGGATTTGAAGATCGTCTATAAAAGGTTGGCAAACGACCTGCATCGCATGGAGGAAACTACAGATACATTATATGCCAGCCTGTACTTTTGCTGTGCTGTGGAGGACCAGGAAAATGAGTTGATAACTCTGGAGATCATCCACCGATACGTGGAGCTGCTGGACAAGTATTTTGGCAGTGTGTGTGAGCTGGACATTATCTTCAACTTTGAGAAAGCCTATTACATTCTGGATGAGTTTATACTGGGCGGTGAAGCCCAAGAGACATCGAAGAAGAACGTTCTAAAGGCCATAGAGCAAGCGGACATGCTGCAGGAGGAAGCCGAGACACCACGTAGTGTTCTGGAAGAGAT
>TCONS_00006497
ACATTTACAGCGGCCGCAGCCTTCATGCTAACGCGATTCTTCCTTCTTTGTTACGACAAACAGAAGTAATTCACGCAACACGACAaTGCAGTTCATGCTGCTTTTTAGCAGGCAGGGAAAGCTGCGGCTTCAGAAATGGTACGTGCCGTTGTCTGACACACAGAAGAAGAAAATCTCCCGTGAGGTCATTCAGATGGTGCTGGCACGCAAACCTAAAATGTGCAGCTTCCTGGAATGGAGGGATTTGAAGATCGTCTATAAAAGATATGCCAGCCTGTACTTTTGCTGTGCTGTGGAGGACCAGGAAAATGAGTTGATAACTCTGGAGATCATCCACCGATACGTGGAGCTGCTGGACAAGTATTTTGGCAGTGTGTGTGAGCTGGACATTATCTTCAACTTTGAGAAAGCCTATTACATTCTGGATGAGTTTATACTGGGCGGTGAAGCCCAAGAGACATCGAAGAAGAACGTTCTAAAGGCCATAGAGCAAGCGGACATGCTGCAGGAGGAAGCCGAGACACCACGTAGTGTTCTGGAAGAGATTGGACTGACATAAATGTCGAGAGCACATCCTACTCCAAACGCATCTTACTGTCTTTTTTTCTGTGGGCATTTTCTCCAAGTCTGTATTTTAGGTTAGCTTGCAGGCTAAAGTAGTGTTTAACATAATCAACACTTCCAGCATTACCCATATAGACTCTTGTATTTCTACTGCCAAACATCTGAGGGAATCGAGCACATGGAAATATTAATCTCAGCAGTTATGCAAATTCCCCATAGCGTTCGACTGTTTGGATTAGAATGCGTGTAGCAAAGATTAGCGTTAGCATTAGCATCCCCAC
>TCONS_00006498
ATGATAAATGTTTCCTGTATGAATGGaTGCAGTTCATGCTGCTTTTTAGCAGGCAGGGAAAGCTGCGGCTTCAGAAATGGTACGTGCCGTTGTCTGACACACAGAAGAAGAAAATCTCCCGTGAGGTCATTCAGATGGTGCTGGCACGCAAACCTAAAATGTGCAGCTTCCTGGAATGGAGGGATTTGAAGATCGTCTATAAAAGATATGCCAGCCTGTACTTTTGCTGTGCTGTGGAGGACCAGGAAAATGAGTTGATAACTCTGGAGATCATCCACCGATACGTGGAGCTGCTGGACAAGTATTTTGGCAGTGTGTGTGAGCTGGACATTATCTTCAACTTTGAGAAAGCCTATTACATTCTGGATGAGTTTATACTGGGCGGTGAAGCCCAAGAGACATCGAAGAAGAACGTTCTAAAGGCCATAGAGCAAGCGGACATGCTGCAGGAGGAAGCCGAGACACCACGTAGTGTTCTGGAAGAGATTGGACTGACATAAATGTCGAGAGCACATCCTACTCCAAACGCATCTTACTGTCTTTTTTTCTGTGGGCATTTTCTCCAAGTCTGTATTTTAGGTTAGCTTGCAGGCTAAAGTAGTGTTTAACATAATCAACACTTCCAGCATTACCCATATAGACTCTTGTATTTCTACTGCCAAACATCTGAGGGAATCGAGCACATGGAAATATTAATCTCAGCAGTTATGCAAATTCCCCATAGCGTTCGACTGTTTGGATTAGAATGCGTGTAGCAAAGATTAGCGTTAGCATTAGCATCCCCACAACTTTCCATCTTCTCTGATTTCAAACATTACCTCTCACCTTCAGCTGCCTTAAAACACTCATCTCCAGCTCACACTGTAACTTATGCAACTCTCTGTAGTTCCAAGTCAGCAGTTCTATAC

Function

symbol description
ap1s2 Predicted to be involved in vesicle-mediated transport. Predicted to act upstream of or within intracellular protein transport. Predicted to be located in membrane. Predicted to be part of membrane coat. Predicted to be active in intracellular membrane-bounded organelle. Human ortholog(s) of this gene implicated in syndromic X-linked intellectual disability 5. Orthologous to human AP1S2 (adaptor related protein complex 1 subunit sigma 2).

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0015031 protein transport biological_process
GO:0030117 membrane coat cellular_component
GO:0016020 membrane cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5448 Predicted to be involved in vesicle-mediated transport. Predicted to act upstream of or within intracellular protein transport. Predicted to be located in membrane. Predicted to be part of membrane coat. Predicted to be active in intracellular membrane-bounded organelle. Human ortholog(s) of this gene implicated in syndromic X-linked intellectual disability 5. Orthologous to human AP1S2 (adaptor related protein complex 1 subunit sigma 2).

Ensembl:

ensembl_id ENSDARG00000058504

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006495 False 1700 mRNA 0.40 5 12719944 12728353
TCONS_00006496 False 578 mRNA 0.47 5 12719988 12727230
TCONS_00006497 False 845 mRNA 0.45 5 12720171 12727529
TCONS_00006498 True 908 mRNA 0.44 5 12720308 12727651

Neighbor

gene id symbol gene type direction distance location
XLOC_003319 NA coding upstream 1542 12718109 ~ 12718402 (+)
XLOC_003307 NA coding upstream 196915 12522770 ~ 12523029 (+)
XLOC_003304 NA coding upstream 225767 12493872 ~ 12494177 (+)
XLOC_003302 NA coding upstream 252884 12466766 ~ 12467060 (+)
XLOC_003284 si:ch211-156l18.7 coding upstream 535401 12175162 ~ 12184543 (+)
XLOC_003321 rbb4l coding downstream 16222 12744575 ~ 12770546 (+)
XLOC_003322 NA coding downstream 53862 12782215 ~ 12785059 (+)
XLOC_003323 rtel1 coding downstream 83553 12811906 ~ 12859263 (+)
XLOC_003324 zgpat coding downstream 131907 12860260 ~ 12875188 (+)
XLOC_003325 si:dkey-11m19.5 coding downstream 151282 12879635 ~ 12955738 (+)
XLOC_003318 CR450764.6 misc upstream 7948 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 25681 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 34345 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 39916 12679732 ~ 12680028 (+)
XLOC_003314 CR450764.9 misc upstream 96093 12623555 ~ 12623851 (+)
XLOC_003369 CR854846.2 misc downstream 3394433 16122786 ~ 16123082 (+)
XLOC_003282 NA non-coding upstream 553154 12166486 ~ 12166790 (+)
XLOC_003329 CR847923.1 non-coding downstream 423566 13151919 ~ 13152385 (+)
XLOC_003332 NA non-coding downstream 465370 13193723 ~ 13194597 (+)
XLOC_003341 CR555295.2 non-coding downstream 1089216 13817569 ~ 13817684 (+)
XLOC_003342 AL928649.1 non-coding downstream 1136493 13864846 ~ 13864964 (+)

Expression


Co-expression Network