XLOC_033215 (ilrun)


Basic Information

Item Value
gene id XLOC_033215
gene name ilrun
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 54325008 ~ 54348568 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064519
GTACTGAGCTTGTTATCGGGTCGCTTGTTATGACTGGAGAAGGCCTCGGACTCAATTAAAACTTATCCCCGGGATAGCCGCATGCTCATGGAGGGCATGGACATAGACCTGGATCAGGAGCTCATGCAAAAATTCAGCTGCATGGGCACCACGGATAAAGATGTCCTCATCTCGGAGTTCCAGAGGCTGCTGGGATTTCAGCTCAACCCGGCTGGCTGCGCCTTCTTCCTGGACATGACCAACTGGAACCTTCAAGCAGCTATTGGTGCTTATTATGACTTTGAGAGTCCAAACATCAACACGCCGTCAATGTCTTTTGTGGAAGACGTGACGATTGGAGAGGGGGAGTCTGTTCCTCCTGACACACCGTTCACAAAGACATGGAGGATACAGAACACAGGTACAGAGTCGTGGCCCCCAGGTGTGTGTCTGAAGTATGTGGGCGGGGATCAGTTTGGTCATGTGAACATGGTAATGGTGCGGTCTCTGGACCCTCAGGAAATATCAGATGTGAGTGTGCAGATGCGTAGTCCAGCTGTTCCTGGCATGTACCAGGGCCAGTGGAGAATGTGCACAGCCACAGGACTCTTCTACGGAGATGTGATCTGGGTGATTTTGAGTGTGGAGGAGGGAGGCCTGCTGGGCGTCACACAGCAGCTATCCTCCTTCAAGACGGAGTTCAACACGCAGCCACACCGCAGTCTGGAGGGAGACTACAACCCTTTCGCCTCACCACAGAAGAACAAGCAGGACACCAATGAGGATCATCTAAAAGACCCTGGGGGCCCCTGGGAGGCCCCACTGGACTCCATTCAGCAAGATCAAAATGGACTCAATCACAGCTCTGTAAATATTACACCAAATGGTCTCCAAAACAACTTATCAGTAGTGACTTACAGCCAGGGCATTAATGGACCCTTCCCGTTTGGACAGTCTTAAGATACAGAAACCACCTGGTGGCTCATCAGAGCTGCTGCTTTTGCCCTTTTCTGGGTTTCAGTGAGAGAAGGAACGGATTTACTCTAAAGACTTGGTGACCCTCCTTCTCCCCCTCCGATCACAACATCACATAAATGTGTGGACAAATCTGTTTGGCTCCAAATCAATACTGAACCAACACCTGAGTTACGCATGTGTGAATGCTAGATTTAGACGAGTGCTAGAAGTTCTAAAGAGATATAATGAAAAAATACACCTTTTTTTGATCTGTATTGTCACATTACAGCAGTTaattcagatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagttcacGAGAGAAAGAGGCAGagtgatggatgaatgaatctcTCAAGAACGCCAGTCACGTTTCACCGCAAAATCAGCAGAAATGGCATCGAAGTTATACTTCGCATGAAGAATATTACGCTTTTTTTTGTTGAGATTTTAAGATCGTTTTACCTCATGATATTTTTCATAACAAATTTCCATTATATAActgatctttgtgtgtgtgtgcgcgtgtgtaatTCCCATTGTTTCTCACCTTTAAATTAAATGattgtattactttttttaaaaagatattgCACTATTTTTATCAGACTGATGGAAATACATTCAAGAAAACACAAAGTactaataatttatcatttaaataatacataacaTCAAACACGGAAAGATTAaatgtatagttcacccaaaaaagtcATTTATTCTCCCTTAGGTGGTTTTAAACCTAAAAGTTTCTttctattgaacactaaagaagatatgtTGAAGCATGCTGGCAcccattgtgtttattttttcctactatggaagtcccagcagccagcatttttcaaagtagcTTCTTTTCGAGTGAGttaatgatggcagaattgtcatttttgggtgaactgtccctttaaattgcATACTTGATACTCTTAAGCAAAGTATAATTCCTAATGTCTCTGGATTTGCTGTGAAGCGTGACTGGAGTTTGTTTTTGAaacctttcttttctttttttgcgagAATCACCTCAATATGTGCGCGACTGAGTGTTTCAGCAATGCACAAAAGCCATCAACAAAGAATTAATGCCTGTCAAGTAGTTTTTCATCAATGTTCTTTGACTTTTTCCTTATAAAGTGattactaaaaaacaaaacaagaggtCAGCGTGCCTGCTTGGAGGTGTGTAATTGACAAACGATTTCATATGGTCCTCTGCTAGCTAATTTTATCACGCTTCGGATTCGGTAACAGAAAAACCCAGCAAACCTGTACAGCATACATGAGCAGATTATGTCTCATTTCTAATGAAGTATACATCCGTACTGCCACCACAGGTCAAGTCATAGCTGTTGTCAGAGATGACCGTACTATCTAGTTGCTGTTGTCATATTTGTTTACATTGATGTTGTTCTAGAGTGCTGATGTTGGTGACACAATCCATCTGAGATGATAGTAAGCGGATGTGGCTTTGGTTCCCTTGTTTACTGACCTAAGAGTTCGCAAGCACATTTGATTTGTCTTTTCCCAATCACATGTTTCTGTTCTTCACCTAGACCTACGATGGTATTAAGCTGTTTTAAATGAGCTGAGGGTGTTTTAATGAGAGGAAagcttgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagttcatTTTAAAGGAATATTCTGGGTTAAGTGCATGTGGTGTGATGGAAAATAATTGAGATTTGTATACCTCTCTTaataaaactgaactgaaaatgCATTGTTTA

Function

symbol description
ilrun Predicted to enable ubiquitin binding activity. Predicted to be involved in macroautophagy. Predicted to act upstream of or within innate immune response. Predicted to be located in cytoplasm and nucleus. Predicted to be active in phagophore assembly site. Orthologous to human ILRUN (inflammation and lipid regulator with UBA-like and NBR1-like domains).

GO:

id name namespace
GO:0045087 innate immune response biological_process
GO:0002376 immune system process biological_process
GO:0016236 macroautophagy biological_process
GO:0000407 phagophore assembly site cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0043130 ubiquitin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050320-117 Predicted to enable ubiquitin binding activity. Predicted to be involved in macroautophagy. Predicted to act upstream of or within innate immune response. Predicted to be located in cytoplasm and nucleus. Predicted to be active in phagophore assembly site. Orthologous to human ILRUN (inflammation and lipid regulator with UBA-like and NBR1-like domains).

Ensembl:

ensembl_id ENSDARG00000078075

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064519 True 2759 mRNA 0.42 5 54325008 54348568

Neighbor

gene id symbol gene type direction distance location
XLOC_033214 SPDEF coding downstream 34781 54280365 ~ 54290227 (-)
XLOC_033213 rps10 coding downstream 144309 54174696 ~ 54180699 (-)
XLOC_033212 NA coding downstream 150935 54164932 ~ 54174073 (-)
XLOC_033211 tusc2a coding downstream 198545 54117004 ~ 54126463 (-)
XLOC_033210 hyal2a coding downstream 213080 54093057 ~ 54111928 (-)
XLOC_033216 snrpc coding upstream 81845 54430413 ~ 54433995 (-)
XLOC_033217 sys1 coding upstream 89787 54438355 ~ 54444929 (-)
XLOC_033218 CR847944.2 coding upstream 110845 54459413 ~ 54465377 (-)
XLOC_033219 CR847944.1 coding upstream 133373 54481941 ~ 54486410 (-)
XLOC_033220 NA coding upstream 149236 54497804 ~ 54523451 (-)
XLOC_033203 NA non-coding downstream 1066940 53252557 ~ 53258068 (-)
XLOC_033199 BX649282.4 non-coding downstream 1291897 53032996 ~ 53033111 (-)
XLOC_033198 BX649282.5 non-coding downstream 1401519 52923373 ~ 52923489 (-)
XLOC_033186 NA non-coding downstream 2290352 52026491 ~ 52034656 (-)
XLOC_033221 dre-let-7a-6 non-coding upstream 157890 54506458 ~ 54506586 (-)
XLOC_033222 NA non-coding upstream 399380 54747948 ~ 54754115 (-)
XLOC_033225 CU861466.1 non-coding upstream 466353 54814921 ~ 54815037 (-)
XLOC_033227 NA non-coding upstream 527609 54876177 ~ 54886711 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000340_16616356_16625161 C20H6ORF106, C26H6ORF106, C11H6ORF106, CLG3H6ORF106, CLG2H6ORF106, C23H6ORF106, CUNH6ORF106, C4H6ORF106 coding CI01000340 null 16615555 ~ 16625161 (-)
bowfin (Amia calva) AMCG00013778 cunh6orf106,LOC107696455,LOC107724532,LOC107666165,LOC107595408,LOC107744375 coding CM030125.1 CM030125.1 42644530 ~ 42655006 (-)