XLOC_033203


Basic Information

Item Value
gene id XLOC_033203
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 53252557 ~ 53258068 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064758
GGAGAGTAGCTATTGCTGATGGTTATGGCTGCTGGTTGTTCACAGAGATGGAAAGAGGAGTTCACAGTTCAAAAACTCCACTTTTTCACCTCAAAACCTGAGCTTCTGCTTCAGCCACGATGGGATATTCCTCCAGTGTTGTGGCTTGTATACAGATGTTTTATGCTGGTCTACAGCCTCAGCTGGTTTATCTACACGGCTCTTCTCTTCAACACTCCTAAATTCTTCATTTTTCTCAGCCATATCTCCTACTGTCTGATGGTGATCTACTATCTGCTTGCTTTCTGTAATCTGGCCTGGGCTTTCCTGGAGATCAGATGCTGCTCTCACAGAAGGAAAAGAGCAGGTGTCAGTATTGAGTGTGAGGCTCTgctttctctctccctccctctctacACTGCTCTCAATCTCCAGTGGCTCCTTCATTCAGTGATGGGCTGCTTTTCATTATCTGTCTCATTTCTATACTGGACCATAATCCACCCCTCGCATCAGCACTCGCTCACAGCCTTCAACATCAACATCCACTTCATCAACAGCGTGCAGACGGCTGTAGATCTGCTTCTGTCCTGTACACCCGTACACCTCACACACTTCATCTACCCAGTTCTTGCTGCAATCCTTTATATCATATTTGCTGTTGTGTATTGGCTTATGGGTGGCACTAACCAATCCGGTCAACCCTACATATACAGCATTCTTGATTTCGGTGGTCGCCCCCTATTGGCAACACTCAGCATTCTAGGAGTTTGTCTGGTTTGTTTACCATTCTGTCAGCTTTTGCTGTGGAAGCTGCAGCTGTTGAGGGAGTGGATGGTGGATTGTGAGAAACTGAGGTGGATGGCTGTGAAGAGAGAGGTTTGGTGGTGGGTAAAAGTGTCTGGAGGAACAGACTCTGGGCTCATGGCGTCACTGGATCCTTCAGTTTCTGTGTTTGAGAGCACAAGATGGAGAGATCTGATGGAGGACCAGCTGTCGCAATCTCTCACGCTCGTTTGAAGAAGTTTTCGGTCAGTCTGAATCTCATTTGAGCTTCTTTATGGTGGAAATAATGGTGTTAAAGTGTGTTTTGCAGTAGGGCTGCACTATATGTCATTTttgcattgatattgcaatgtgtgtgtccacaatagtcacaatgcaa

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064758 True 1144 lncRNA 0.46 3 53252557 53258068

Neighbor

gene id symbol gene type direction distance location
XLOC_033202 slc38a3b coding downstream 47749 53147446 ~ 53204808 (-)
XLOC_033201 gnai2b coding downstream 108221 53050166 ~ 53144336 (-)
XLOC_033200 inka1b coding downstream 204266 53041180 ~ 53048291 (-)
XLOC_033199 BX649282.4 coding downstream 219446 53032996 ~ 53033111 (-)
XLOC_033198 BX649282.5 coding downstream 329068 52923373 ~ 52923489 (-)
XLOC_033204 rbm5 coding upstream 5786 53263854 ~ 53282595 (-)
XLOC_033205 gnb1b coding upstream 46909 53304977 ~ 53334259 (-)
XLOC_033206 si:ch211-161c3.6 coding upstream 115430 53373498 ~ 53391727 (-)
XLOC_033207 mst1 coding upstream 136057 53394125 ~ 53426773 (-)
XLOC_033208 cacna2d2a coding upstream 245205 53503273 ~ 53885514 (-)
XLOC_033186 NA non-coding downstream 1217901 52026491 ~ 52034656 (-)
XLOC_033181 NA non-coding downstream 1711069 51528763 ~ 51541488 (-)
XLOC_033179 BX530017.1 non-coding downstream 2496109 50754501 ~ 50756448 (-)
XLOC_033212 NA non-coding upstream 906864 54164932 ~ 54174073 (-)
XLOC_033220 NA non-coding upstream 1239736 54497804 ~ 54523451 (-)
XLOC_033221 dre-let-7a-6 non-coding upstream 1248390 54506458 ~ 54506586 (-)
XLOC_033222 NA non-coding upstream 1489880 54747948 ~ 54754115 (-)
XLOC_033225 CU861466.1 non-coding upstream 1556853 54814921 ~ 54815037 (-)

Expression


Co-expression Network