XLOC_033208 (cacna2d2a)


Basic Information

Item Value
gene id XLOC_033208
gene name cacna2d2a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 53503273 ~ 53885514 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064508
TGATATTGATCAGCTCTGGTTTACTCTTGTTAACCTGTGTTTTCTGTATCTAACAGGATGATGCACTGGGCAGGTCGTATAGAGAAGGAGCTGGAGAAAGTGCTTCAGCTGGTCACCGGAGGCCAACAAATGAGAGCCATTTATAATGATAAGCGGAACCAGTTCGATGTTGTGCGAAATACACCCAAGCAGCTGGTGGAGAAGGTGGCAGGAGACATCGCCAAACTGCTCAACAGAAAGCGCAAGGCTCTGGAGaGGTTGGCCAGAGAGGCTGAAGACATCCAACGAGAGCATTCATGGCAAGATGCAATCAAGgaAAATGACATCCAGTACTATGATGCCAAAGCCGACTCGGATGTTatggatgatgatgatggagaaaATCTGTTGGATAATCCGAACTCTCTGTCGCTGGAGTTTGTGGACGATCCGAACTTTAAGAATAAAGTCAACTACTCGTATACGGCTGTACAGATTCCTACTGACATCTACAAAGGCTCTCCGACGATCCTGAATGAGCTGAACTGGACTCAGTCTCTGGAGAGAGTCTTCATTGAAAACAGTCGAGAGGATCCATCACTGCGCTGGCAGGTGTTCGGCAGCACCACCGGAGTCACCAGATACTATCCAGCCACTAAATGGAAAGCACCTAACAAGATTGACCTGTATGATGTGAGGAGACGACCATGGTACATCCAGGGAGCGTCTTCTCCAAAGGACATGGTGATCATCGTAGATGTgAGCGGGAGTGTCAGTGGACTCACACTCAAGCTCATGAAAACATCGGTCATTGAAATGCTGGACACACTTTCAGATGATGACTATGTAAACGTGGCTCGGTTCAATGAGAAAGCGTACGCTGTGGTGCCGTGCTTCACCACGCTGGTCCAGGCTAACATTAAAAACAAGAAGATCTTCAAAGAGGCGGTGATGAACATGCAGGCCAAGGGAACCACAGACTACAAGACCGGCTTTCAGTTCGCCTTCGACCAGCTGTTAAACGACACCAGCGCCCCTCGAGCAAACTGCAATAAGATGATCATGATGTTCACAGACGGCGGCGAGGATCGAGCTCAGGACATCTTTGAGAAGTACAACTGGCCCAACAGAACAGTGAGAGTTTTCACCTTCTCTGTGGGTCAGCATAACTATGACGTCACTCCTCTGCAGTGGATCGCCTGCTTTAACAAGGGTTACTACTTTGAGATCCCTTCCATTGGAGCCATAAGAATCAACACACAGGAGTATTTGGATGTTCTGGGACGGCCGATGGTGCTGGCTGGAGAACGGGCTAAACAAGTGCAGTGGACTAATGTGTACCAAGACGCTCTGGTATGGACGATTATCATCATCGTCAGAATCATCAGCTCAGCTAAACTGTGCTTTATTGTTTTAGCTATGACCTGCTTCTAAAACCAAACTGATGAGAATTTGGTGGATGAGCAAATTTCAAATTAACTGTTTGTGAAATTCGCAAATAATAACAACGAAATGTTTTGGATGAGGAAATGGCTAAATATATGTGAAAGTTAAAGTGTAGTAGAAATGTTTTTGGGGTTTTTAACTTTAGcaattaaattacttaaatttgTTTGATTTCAGTTATTTGCTAAGGCACATGTCCTAGTTaggttttaaatgtaatattaaagttatttaaagtttaag
>TCONS_00064759
agaGGTTGGCCAGAGAGGCTGAAGACATCCAACGAGAGCATTCATGGCAAGATGCAATCAAGgaAAATGACATCCAGTACTATGATGCCAAAGCCGACTCGGATGTTatggatgatgatgatggagaaaATCTGTTGGATAATCCGAACTCTCTGTCGCTGGAGTTTGTGGACGATCCGAACTTTAAGAATAAAGTCAACTACTCGTATACGGCTGTACAGATTCCTACTGACATCTACAAAGGCTGTGAGTAATGACaacaacccagcaggcacacaacatcataagacattaatattaggttggatttaggttgtgacgtcaggtgaccaaaattcaatgtctagccagggtctaaggacaacgttattttgacattcAATAACGttgtcaaattacgttgatatttggttgactttaggttgtgttgcaAAGAGACCAAcgtccaacatctgatagatgtcatagtgataacgtccacacaatgtaaaggtgtaacatgattagacgttg

Function

symbol description
cacna2d2a Predicted to enable voltage-gated calcium channel activity. Predicted to act upstream of or within calcium ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of voltage-gated calcium channel complex. Orthologous to human CACNA2D2 (calcium voltage-gated channel auxiliary subunit alpha2delta 2).

GO:

id name namespace
GO:0005891 voltage-gated calcium channel complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005245 voltage-gated calcium channel activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050320-71 Predicted to enable voltage-gated calcium channel activity. Predicted to act upstream of or within calcium ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of voltage-gated calcium channel complex. Orthologous to human CACNA2D2 (calcium voltage-gated channel auxiliary subunit alpha2delta 2).

Ensembl:

ensembl_id ENSDARG00000103390

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064508 False 1668 mRNA 0.45 14 53503273 53885514
TCONS_00064759 True 513 lncRNA 0.41 3 53611115 53690618

Neighbor

gene id symbol gene type direction distance location
XLOC_033207 mst1 coding downstream 76500 53394125 ~ 53426773 (-)
XLOC_033206 si:ch211-161c3.6 coding downstream 111546 53373498 ~ 53391727 (-)
XLOC_033205 gnb1b coding downstream 169014 53304977 ~ 53334259 (-)
XLOC_033204 rbm5 coding downstream 220678 53263854 ~ 53282595 (-)
XLOC_033203 NA coding downstream 245205 53252557 ~ 53258068 (-)
XLOC_033209 hyal1 coding upstream 177518 54063032 ~ 54078623 (-)
XLOC_033210 hyal2a coding upstream 207543 54093057 ~ 54111928 (-)
XLOC_033211 tusc2a coding upstream 231490 54117004 ~ 54126463 (-)
XLOC_033212 NA coding upstream 279418 54164932 ~ 54174073 (-)
XLOC_033213 rps10 coding upstream 289182 54174696 ~ 54180699 (-)
XLOC_033199 BX649282.4 non-coding downstream 470162 53032996 ~ 53033111 (-)
XLOC_033198 BX649282.5 non-coding downstream 579784 52923373 ~ 52923489 (-)
XLOC_033186 NA non-coding downstream 1468617 52026491 ~ 52034656 (-)
XLOC_033181 NA non-coding downstream 1961785 51528763 ~ 51541488 (-)
XLOC_033220 NA non-coding upstream 612290 54497804 ~ 54523451 (-)
XLOC_033221 dre-let-7a-6 non-coding upstream 620944 54506458 ~ 54506586 (-)
XLOC_033222 NA non-coding upstream 862434 54747948 ~ 54754115 (-)
XLOC_033225 CU861466.1 non-coding upstream 929407 54814921 ~ 54815037 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000340_16278246_16280290 NA coding CI01000340 null 16278027 ~ 16280817 (-)