XLOC_033206 (si:ch211-161c3.6)


Basic Information

Item Value
gene id XLOC_033206
gene name si:ch211-161c3.6
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 53373498 ~ 53391727 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064506
CTTCAGATCAACACTGGACAACGTAAACAAGTGAGTTTcccactctgtgtgtgtgtgtgttgatgaatGTGTGAGGAGCTCTGGGATGGACATGGAGGAGTCTGGAGCAGGTCAGATGGAGGAGACAGCAGCTCCCAAACGCAGCAGAGGACGACCACGCAAAGCACCACAGGAGCCTGTTGAACCGTCTGCTCCCCGGAGGCCGAGAGGACGACCGAGAGGCAGTAAAAACAAAGGCCAGCGCCTCACAACCAGGGACGAGCCACCTAAAGAAAGAAGACCACGAGGAAGACCAAGAAAATGGCCTCAGAAGACTGTTCAACAGGAGGAACAGAAGGCTGAGGATGAAGGGGTGGAGTCAGTGGAGGAGCCACCCACTCAGGCACCGCCCACTGCAGAAACATTTGAAGAGAGTGACTAAAACTACCTCAGCCATGACTCTCATACTACACTCGCtgcaaaaaaaggctttttctacttagaggtttttgtcttgatttacgattttttttttttagatatttggactgaaaACAAGGATGATTTTATAGAGAAGCAAAattaaaacttttcaaaaataatgtCCAAATTAGGTtgagttttaaattaaattaaattttaaattaaattgagttTTTCCTTGAAACGAGTAAAACgttctgccaatggggtaaactaaaataaaatatttttattgaaaattaaaataggattatttagtttaaaaaaaaagtgaaaatgtcaCATTTAGGGCTCAtagataaattattattattattttaattttgaaaatctATGTTGTACAATAATCAATTTTTAAGGTGAAAAAGCGATATACAAtgtcattttaaagggatagttcacccaaaaataacattTGCTCACCTTCAAGGGGcgatttttgtttttctgtgaacacaaatatttatatatattaaatttttttatttttttgataaatgaTGGAAGGGcatggtggcgcaatgggtagcacaattgcctcacagcaagtaggtcgctgggtcaagcctcagctgggtcagttggcatttctttgtttgcatgttctcttcatgttggcgtgggtttcctccatgtgctccagtttcctccacaagtccaaaaacatgtggtacagaattgggtaagctaaattgtccgtagtttatgtgtgaatgagtgtgtatggatgctttccagtgatgggttgcagctggaaggacatctgttgcgtaaaacgtgctggataagttggcggtttattccgctgtggggaccccagattaataaagggactaagtcgaaaaaaaaattaatgaataaatgatagaaAATGGTGGCCACTAATATTAAGGAAgggaaaatactatggaaatcaacgGCTACTGGTTTTCAAAACTCTTCATAATgccatcttttgtgtttaacaaaccaAAGAAACTGaattgaaacaagtggaggatgagcaaatgatgacagcattttcatttttgggtgtactgtctcTGAGAACTGAAAAATATTGAGCAGTATATTGAACATATAGATTTGGATTGAGAGAATGAATTTGAACTTCACTTTTTAAACACATGCATGTTGTGtgtcaaatttaaatattaatttcttaccGTTTCTTATTCATTTCTTACACATttgttggagaaaaaaaaaatgtgtatattttatttgagCTACACTCATATATGAAACCAAAAACTTTGTTTCCTTTATTTAACGTTCAGGATCTTGGGATTAAAAGGGATTTTGAAAAATCACAGATGATACAAAACTACAGTCATCTTAGTTTACAGGGAACGACTGGGTTATATGAGGTTTATTTAATCTTCTCAGGATtccaggggaaaaaaaacatacgACCAAAGCTTGAAAAACTGCTCTTTTTTATGTATAATTtctttatattgtgtttttttatattaatgttcacGGTGGAATGAAAGATTTGAATAttgtatatgcagagctagtgtttcctCACATACTGATAAACAAAGGGTTAATGTAATGTCTTTCCATTTTATACGGCTCCTTgaacagcatcgatgttgtaatgtaatcacAATACAATCAGTtcaacagactttggcattcatgtTGTTGCTtaagcgtaaaatgagacaaaaagccgtttactcgcacgcgcctgtcagaatcggcaggctagcgcagaagctccattgaatatactaggggtaaaataagtttatttatttttaatattttaaagacatggcgggtaAAATGTATCTTAACGCAgcgcttcttgtacaatctgaaacccacttcataccagatatcactcagccagtggagatggCTTATTTTctaagaaaacagaccttaaacgcgccgatttttttaatggcatacagttcaccagaagcacttaacccaggttactgataaattaaaaacatcacggtttctgctacattcaatcttccatggcggggcgccacgccaaaattcatcccgccatggcttcattacagcttctcattcaaacgtttttttttaatttttttttataaaagggttataatcgcaccaaaacgtattaaagcataagtgaattataacagcgcaaccttttctgtaatcgtagtatTGCTGTGccttatttgtttaaccctttaaggtgacgtgctgactggcTGACAGATgtatgatgcgtgaggccagcaaacacgacgtatagccgtttcaatttacttcaggacgcattaatgctacTCTGTAGGTCTGTTAGAGACACCCATAaacattcctagcaaatctaataaatgctggagacatactcgttacataaacgcactaaattgcacgcagcagcgtttgtttgagagcgcacaagaagatctgcgcgctcttgatgcggcttatatttgaggtggcgtgcaagaagttttgtgcacgagcggAGGAAATCGGCACTCAAGCAGAGATTCACATGCTCGTACATGTAGGTTATtgcataaatgcgatctcgacttctaatactgcgttTACGACATATGTCATTGAAATAACCCCACAGGTATTTGGTAgacctgtgtaaaaaaaaaaaaaaaaaaaacccgccacagctggaaaaaatcctagaggaaacactgagagTACTTCTGCATATACACTATTCAAACAGACAACTGTGCCTTTTTAATGGAATAAGGGGAGTGACTTCATCAATGATTATCAGTTCataacatgatgatgatgatgatgatggtagcTTCAGTACCTCAACGGTTTGCTAATTGGAgtgttttgtcatttgttttgttttataaatgcatACTTTGTCAAATGGCCTGGAAATATTATCTTTAGACTGTATTTGTTTGTAATacgccttttttatttttttatttgtactgcCGTGAATTTGTTATCGTGCTGAAATGAGGTTGATGTTTACAACACGACTGATGTTTAAGACATCTCTTATTGACAATACATGTTGccattattgaccttattctctaaaaaaattattcatttaatttaacaatttatatggactgatgttaaacaaacaaatgaagttgaacattgctACATTTAATGTGTTGGTTTTTAATTCCGCCTATATAAATTGATTGCGACCACTTACCTTATAAAATGGAGTAAATTCAATGTATATTTTTCTCTGTGTTCTTGATCTAGCCGGGCTTTCAGCTAATTCTATCAAACCTccacagctgcttcagaacgcagcagcacgagtggtctttaatgaacctaaaatagcacatgtcactctgctactcatccgtttgcactggctgccagttgctgctcgcatcaaattcaaagctctgatgtttgcttactaAGCGATATCatgctttgctccttcttatctgctctcacttctgcagatttatgtgccctccagaaacttgcgttcagtgaatgaacgtcgcctcgtggttccattccaaagagggaagaaatcactttcccgaactctcgcattcaatctgcccagttggtggaatgaactccctaactgcattagaacggcagagtcactcgctgtcttcaagaaatgactaaaaactcaactatttagtctatactttacttcctaatctgcaattgcctctctcgCTCCACCGAttactgtactcaaaaaaaaaaataataacattactaatgctttgcttcttacactttacacacctgaaacttgcctacagcacttattcattgttgctcttatagttgtgtaaattgcttccttgtcctcatttgtaagtcatgaacacacttgtttgtagagcaagtaattgaagcattttctgctgtttattattcctatagTCATTTCTCACATAGGCAACTTAACTGAACAACAATCGCAAATACGAGCATACTTCCACatcgcagaataaggtcaatacagtaaATGCTTctaaagggtttgttcacccaaaaaaaaaaaataatgaaaatatactcactatttacttgccCTCAATTAGTTCCAATCTTCAATGAGTTTCTTTGTTTGCTGAAcctaaaagaagacattttgattaaagttggaaactggtaaccattgactcatAATAGGGAAAAAATActttagaagtcaatggttaccggtttccaacattcttcaaaatatcctcttttatgttcaacagaagaaagaaactcgtaaagaTTTGTGACAAGTTAAAAGCGGGAAAGTAATGACAgaatttcaacacaatctcatggcaatttgtaactttttgatttagtagccaATTCaaatgaattcgtacgatctaattcgtacaatttagtacgatttgattATCGCCCAATGatggtggggttaggtgccacgcctcctttttaaaatcgtacattttcgtacgactgaactcatacgaattcgtacgaattagccactaaactggcaaaacgtaaaatacttacgtttcctcgtgagatcaggctgcagaattttcagttttgggtgacaTTTTGGGTAAAACAACTTTTTTATTGTAACATTTTTTGTGAACTGAAGCATTGTGGTTAataatgtcagtttaataaaacatttgacGGTGTGCCTCATGATTACAGGCTCAGGTAACTTTGTTTTTTCATACCTCTTTTTTACACTCTTCTAAGGCCAGTAAAGATGTTAATGCAGCtgtttgtttgtgaataaaatgACAGTGTGAGACACACAAT

Function

symbol description
si:ch211-161c3.6 Predicted to enable transcription coregulator activity. Predicted to be involved in regulation of transcription, DNA-templated. Predicted to be located in chromatin. Predicted to be active in nucleus.

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006284 base-excision repair biological_process
GO:0000785 chromatin cellular_component
GO:0005634 nucleus cellular_component
GO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity molecular_function
GO:0003677 DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131126-51 Predicted to enable transcription coregulator activity. Predicted to be involved in regulation of transcription, DNA-templated. Predicted to be located in chromatin. Predicted to be active in nucleus.

Ensembl:

ensembl_id ENSDARG00000078781

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064506 True 5217 mRNA 0.37 6 53373498 53391727

Neighbor

gene id symbol gene type direction distance location
XLOC_033205 gnb1b coding downstream 39239 53304977 ~ 53334259 (-)
XLOC_033204 rbm5 coding downstream 90903 53263854 ~ 53282595 (-)
XLOC_033203 NA coding downstream 115430 53252557 ~ 53258068 (-)
XLOC_033202 slc38a3b coding downstream 168690 53147446 ~ 53204808 (-)
XLOC_033201 gnai2b coding downstream 229162 53050166 ~ 53144336 (-)
XLOC_033207 mst1 coding upstream 2398 53394125 ~ 53426773 (-)
XLOC_033208 cacna2d2a coding upstream 111546 53503273 ~ 53885514 (-)
XLOC_033209 hyal1 coding upstream 671305 54063032 ~ 54078623 (-)
XLOC_033210 hyal2a coding upstream 701330 54093057 ~ 54111928 (-)
XLOC_033211 tusc2a coding upstream 725277 54117004 ~ 54126463 (-)
XLOC_033199 BX649282.4 non-coding downstream 340387 53032996 ~ 53033111 (-)
XLOC_033198 BX649282.5 non-coding downstream 450009 52923373 ~ 52923489 (-)
XLOC_033186 NA non-coding downstream 1338842 52026491 ~ 52034656 (-)
XLOC_033181 NA non-coding downstream 1832010 51528763 ~ 51541488 (-)
XLOC_033212 NA non-coding upstream 773205 54164932 ~ 54174073 (-)
XLOC_033220 NA non-coding upstream 1106077 54497804 ~ 54523451 (-)
XLOC_033221 dre-let-7a-6 non-coding upstream 1114731 54506458 ~ 54506586 (-)
XLOC_033222 NA non-coding upstream 1356221 54747948 ~ 54754115 (-)
XLOC_033225 CU861466.1 non-coding upstream 1423194 54814921 ~ 54815037 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location