XLOC_033202 (slc38a3b)


Basic Information

Item Value
gene id XLOC_033202
gene name slc38a3b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 53147446 ~ 53204808 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064496
ttaaagataGTCAAGGAtgaaataaatcttaattttCCTTCTTTTCAAAGGTGCGGAGAGCCATTCAGGAGATGGCCTTTCCTAATAAAAGCTTCAACTGGATCCGACACATCGCCATCGCTGTCGTTCTCCTGACACTTATTAACATGCTGGTCATCTTCGCTCCCAACATCCTGGGCATCTTTGGCATCATTGGTGCGACATCCGCTCCATGTCTGATCTTCATCTTCCCCGCTGTTTTCTACATCCGCATCGTTCCCAAGGATAAGGAGCCGATGCGCTCTACTCCCAAAATCTTTGCTGCCTGTTTTGCTGGATTGGGGGTGTTGTTTATGATAATGAGCTTGAGCTTCATCATTATTGATTGGACAACGGGCAGCGGCAGTGCTCTCGGCGGCCACTAGGGGACAAACTctgatgaatgtgtgtttgtatgagagtgtgtgtcgTATGTTTAGTAATGATTTATTTGTATCCGTATTTGTCTGACACAAAGGATGCTCTATCTCGCGGTGGGAAGGGAAAGTTGCGGGGGACCCGAAGCAAAAATCCCAATTTCCACAGATGACAATAATTCGGAAAGAAGTCCATTATACTATATTTGTGTCAGTGTGGAATGATTACTTTTGTATTTATTGAAGGGTTAATGCAGCCTCACTTATTCTGTAGAAATACACTTTTATTGCTCCGATTTgctatactttattttttattcactttcTGTTTTATCAATCCAGAGCTTTTACCCTTGATACAAGTACTGTAGAAACACACGACTGtcaaaagcgattagttgactttacttaaactgAGTAAGTCTCTTGTCTTAAAATGATTAAGTTTATGAACTATGTGTCTAATTATAGAAATTAATCCAATAAAAGTTATGTTCCAAATTAtgtcaggtttactcacttttcgaAAAGGCATAGTTTgccaaaaatgtacaaaatttatcaaattttattatttttatttactttatttattaacccttgtgtggtttcttttttctgtcaaaaactaaagaagatattttgaagaaagctggagacctgtacccattgactttcaAAGTGGGAATACTATTGAAATCAATGGCTGCAggtttctaaatatatatatatatatatatatatatatatatatatatatatatatatatatatatattatatataaaagaaagtCAAAACAAGTGTTAAAATcagaacaaattattaatttgttattaaaattattaaaattattaaaatcaaataaaaacaacatcatactgaataaaatataataaaacttaaaattaatACTTACAAATGAATTATtcagaaacattaaataataatttgaaatttAGGAAGTTAAAaggaaacaaataatttatttttgctatatttaacaattaaaaataaaacgatAGGAATAcacaaaatgtacaaattaaatattattaaaagaaatataaaaacattaaataatgacattacatttaagaaaataaaaaggaaaataaatttatttatgcttaattaaacaaataaaaataatttattttgggaTGAATAAAACCTACAACTACATCACATTTTTTGAagcgtgagtaaatgattacagaaattccatttttgggtgagtaAAGTTATTAATTGGTTTAACAGTACATAATTCAATTCTTAACTCACAACAtaacgtttgctgtttgttcaaactatttaaaatgagctgaaacaacacaatttacaACTCGACTCAAAACACAACTCTCTTAAGCTTTCGGTGTTTTGAGGGATAAAAAGCAGATTCTGTAACCTTATCTTTTTACTTTAAAACCAATGCTctaaagtattcaacaatttaatttaaaatgtcctatcgtgtttttcttttttttttaattggacaatggatttaaatgtgaaaagtaCATACAACATATATAAACGTAATAAACTGTCGTGGTTGggtgctggaaaagcataaaaatgcatcttgaaagtgcttgaaaagtgctggaataaggtgtaagaaccctgatTTTACTTACAGATTGTGAATTATTTCTGTTGCAACTTCTAAATATTAAGTTAAgtgaacttaatagttttaagtaTGCACATAGTTCATTAACCTAATCATTTTAATGCAGAGTTTactaagtcaactaatcgctttttacagtgtactgcacAATTTCCATGTGCCAAAATGAACGATTTCTATAATCAagcatattttctgtttttctaaaGTATTCACAGTATATTTAGCATTCGTGCCTTGATCACAGAGATTTGAACAgggaaaaacatatttatttctaAGTAGCGAATACATTTTGCAGTTCACTGGATGAGTATTAGTCTATATTCTAGTATTAATACAATAAACGTGTTCTTAATCATTTTTGTTTATACTGATGCTGCCTGCGTACTCAAACATTATCCGTTAAGTACATCATATATCTGTTCTATCACTTGAAATAAATGTAATCCACCTTGTATTAGAACACCATagtagatatttagaaaaatgctgccTTCAATAatattacgccccattcacacggggcttcagcgtcaacgcttgactgaaggcgtgtctgaagttggggctaaatcgatcgtcatagcagcgtcagccaatgaaattcagtcagcaataggccactgtctagctggtgtatttgcatatagcgatctgattggctgacgcttccgtcggtgcTTGataagttgagctagtcccaacttctgcagcgagcaacgcctctgaagcggcgcctaTTGGATCctcaatgcagttcggcaacgcttgacgtcacccattcaaagtgaataagAAGCGTTGACGCttacgccccgtgtgaatggggtgttacTATGGATGACTaagcagcattcttcaaaatattttcttgtgCATCATATTAAAGGGATGGATGACCCAAAAATCAGGTTCCTCATGTGGTTTCTGTCTTATGtggaatgcaaaagaagatattttgaagaatgctccactaaaaaaaatattcaggaaTGACTCTTTGGagttactcaattttttttacatttagtggctgtaaacaatttatttgggctgaatttaaacaaacaatttaagtagaattgtattaaattacatttgtttgtttgaattcaacacaaataaattgcttgcaccagttttgcagacattatttttttcagtgtgcttaGTCATCCTATAGTAAGAAGGATAAAAGACTATGGAAGTCAGCATTTTTCTAAgcatcttcttttgcgttcaacagagaAACAAACTCATACAGGAtcaaacaagtgaatgatgagcaTATAATGACAGAACTGTAATTTTTGGGTCTCTTTAAGCATTTCACCACAGTGAAGTCAAAGTGATTTAGTTTAAAAGCTGCTCTCGGATGGTGTCTCgcatgtaaatgttttattagttcaCATCTGTGTGTTTGTCATGTCTTTTCTTGTACTTGTGGACCCTGTTTTGCTATTAGCAGTATAATATTTTTTGGTTTTCAGTATTTGCTCGTTCTCAGTGGTTCATGTGATGCTTTCAAAACCGTAATGTGTTCTTATTCTGCCAAATGATGATGCTGTGCAATCCTAGTGTACAATAATATCATGTGCCTTAGGTTAGTAGTGGCGGATATCGGTTGACACGTAAGCAAACAGGAGTTTTGTTTTTGGCCTCACAGACTAATGACAGATTCATTTGGAGTATATATAACCTGACCTGACATTGTAGTGTTGTTTGTACTGTTGACAAAAGACAAACTGAACTTTATGATGGAGATTAAAGTACAATGTCAGTCGGCAAAtgtcactacactgtaaaaatgagcaggtttgtgtattttgtgattcatgttcttatttttccacatttatttatgcttttcaattgcattatgggagattGATCTCTCTGCTAAtgacttttaaccttgaaaagttgggagaagtgacttttatgagcatttttaatagtttaaaatgatatattgtttgggttggtgttttacactacctgacaaaagtcttgttgttgaccCCAgtcgtaagagcaacaaataataacttgacttctagttgatcatttggaaaagtgtcagatttttctgatgaatcatctgttgagctgcatcccaatcatcacaaatactgcagaagagcttgaacccaagattctcatagaaatcagtcaagtttggtgaagaaaaaaatcatggtttggggttacattcagtatgggggcgtgcgagagatctgcagagtggatagcaacatcaacagcctgaggtatcgacatttgtgctgcccattacattacaaaccacaggagagggcaaattcttcagcaggatagcgctccttctcatacttcagccgtcacatcaaagctcctgaaagcaaagtagctcaaggtgcttcaggattggccaacccagtcaccagacatgaacattattgagcatgtctgggataagatgaaagaggaggcattgaagatgaatccaaagagtcttgatgaactctgggagtcctgcaagaacgctttctttgccattccagatgactttattaatatgtgatttaagtcagtgcagagatgtatggatgcagtcctccaagctcatgggagtcagacacaatattcattctgtttccactgcagcaggactttatattctgtactgtgcattatttattttaagtgacaagacttttgcctaagcaaagtcagatcttactctcttaaaatcaaggcatgatcatattttattgtggtaaaattagcgtaatctagaggtctttcatataagccacttctgataccaaatgaacaactaaaagtcaagttattatttgttgtttctcaAACTTTGGTAGGCGACACAACTTTTATCAGGGggtgtatattatgctacaaaaaccttgtaataagcaGCCAGtacatttttctgttattttacagactctttcttatacattatagtatttcaaacaactaaaatatcaataaaagtcactttgttaaactgtaaagttgaatAATCCACATTAAAGTCGACAAAGCAGAAATCaagttcccataatgcaattcactacTGTAAATAAACGCTTGTTGATCACAAAATACACATAACAGCAATTGTTTTAGTGTATTTAACATTATAATGATGTGTTACAGTATGCAAATCTTTCTTTGTTCATGATTGTTTGATTCTAATATGTAGCTTGTGGAGTATTATACCGTCTAAATATTCAAAAGAAAAGTGCCTCGTATTGCAACCATCTACCTTAGATACTCTGTAGATACTAcctatcttttcttttttccattaTAGGTGTTGGTCAAATAGACCGcagactttattattttattttattttttaatcattatttttttttaaatcatggtaACAGTGAATTCTgaattgtaattttattattatactttattttaaaaagtagttttagTTATAGCCTTGCTGTCTATATTTGATATTTCCTTCAACCAAAGGTGACTGAGCATAAATTCATCGATAATTAATACTGATTATTCTGAATTGGGATTCATATAGTGTGTAATGCATACAATCTGGTACAAATAATCTGGAATTCTTCCCTTCatagttttatttacattatttacaccTATTTAATCACTTCAGTCGGGTTCATATGATAGATTGTTCAGTGCATtcgtatatatattgtatataaatgtGAACCGCTTTTATTTGTGATGCATATTTAGCTTGTATAGTGTAAATAGCAGAACCACTTTGACaataaaaagctgtttttaaaccTGTA
>TCONS_00064497
ATGGAACCTGCCAGATCCGAAATGAGTATCCTACCCAATGGAAAAGGCCATGACTTGGGGGAGGAAATGTGTGTGCCGATGAAGACCATGATGGAGGAAGAACAAAATGGTACCCATCACGACAGATTTGATGATCCTGACAGCACTCTTGCGGAGAACATTGAGTTCCTGCCCAACAGCGAGAGCAAGAAGCCACGTTTCACTGATTTTGATGGGAAGACGTCTTTTGGCATGTCGGTCTTCAATTTGGGCAATGCCATTATGGGCAGTGGGATTCTGGGATTGGCCTACGCTATGGCCAATACTGGCATATTGCTGTTCTTGTTTCTCCTGACGGCTGTAGCGGGTCTGTCCTGTTACTCCATTCACCTCCTGCTCAAGTCCTCTGGTGTTGTGGGAATCAGATCATATGAGCAGCTGGGATTCAGGGCCTTCGGGATGACAGGAAAGATGGCAGCCGCAATCGCCATTACTCTGCAGAACATTGGAGCCATGTCCAGCTACTTGTACATCGTCAAATCAGAGTTTCCACTTGTCCTGCAGGCATTTCTGAGGACAGACACTACATCAGGGGAATGGTATCTTAATGGAAACTACCTGGTGGTGCTGGTGTCCATCTCCATCATCCTGCCATTGGCTTTAATGAAACAGTTGGGTTATCTCGGATATTCCAGTGGTTTTTCACTCAGCTGCATGGTTTTCTTCCTCAGTGCAGTGATTTATAAGAAGTTTCAGATCCTGTGCCCATTCGAGGAGTTCTCGGCCAATAGCACGCTGACTCACGCCCACTCAAATATCACAGTAGACCACGCCTACCATAACAGTCATGTGATGGAGGACGACTCGCACTGCCACCCACAGATGTTCACTGTCAACTCACAGACTGCTTACACCATCCCCATCCTGGCCTTTGCCTTTGTCTGCCACCCTGAGGTCCTGCCCATCTACACAGAGCTCCGCAACCCAACACAGAAGAAGATGCAGCACGTTTCCAACATTTCCATTCTGATCATGTACACTATGTACTTTCTTGCTGCTCTGTTTGGATACCTAACCTTTTACACGAATGTTGAGCCTGAGCTCCTGCACACTTACAGCAGGATCGACCCATACGACACACTCATCCTCTGTGTGCGATTGGCTGTTCTCACCGCCGTCACACTGACTGTGCCCATCGTTCTGTTCCCAGTGCGGAGAGCCATTCAGGAGATGGCCTTTCCTAATAAAAGCTTCAACTGGATCCGACACATCGCCATCGCTGTCGTTCTCCTGACACTTATTAACATGCTGGTCATCTTCGCTCCCAACATCCTGGGCATCTTTGGCATCATTGGTGCGACATCCGCTCCATGTCTGATCTTCATCTTCCCCGCTGTTTTCTACATCCGCATCGTTCCCAAGGATAAGGAGCCGATGCGCTCTACTCCCAAAATCTTTGCTGCCTGTTTTGCTGGATTGGGGGTGTTGTTTATGATAATGAGCTTGAGCTTCATCATTATTGATTGGACAACGGGCAGCGGCAGTGCTCTCGGCGGCCACTAG

Function

symbol description
slc38a3b Predicted to enable L-asparagine transmembrane transporter activity; L-glutamine transmembrane transporter activity; and L-histidine transmembrane transporter activity. Predicted to be involved in amino acid transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human SLC38A3 (solute carrier family 38 member 3).

GO:

id name namespace
GO:0015817 histidine transport biological_process
GO:0006867 asparagine transport biological_process
GO:0006868 glutamine transport biological_process
GO:0003333 amino acid transmembrane transport biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015171 amino acid transmembrane transporter activity molecular_function
GO:0015182 L-asparagine transmembrane transporter activity molecular_function
GO:0015186 L-glutamine transmembrane transporter activity molecular_function
GO:0005290 L-histidine transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-121120-3 Predicted to enable L-asparagine transmembrane transporter activity; L-glutamine transmembrane transporter activity; and L-histidine transmembrane transporter activity. Predicted to be involved in amino acid transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human SLC38A3 (solute carrier family 38 member 3).

Ensembl:

ensembl_id ENSDARG00000091061

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064496 False 5834 mRNA 0.33 3 53147446 53160459
TCONS_00064497 True 1542 mRNA 0.50 16 53152876 53204808

Neighbor

gene id symbol gene type direction distance location
XLOC_033201 gnai2b coding downstream 3110 53050166 ~ 53144336 (-)
XLOC_033200 inka1b coding downstream 99155 53041180 ~ 53048291 (-)
XLOC_033199 BX649282.4 coding downstream 114335 53032996 ~ 53033111 (-)
XLOC_033198 BX649282.5 coding downstream 223957 52923373 ~ 52923489 (-)
XLOC_033197 rbpjl coding downstream 351234 52757433 ~ 52796212 (-)
XLOC_033203 NA coding upstream 47749 53252557 ~ 53258068 (-)
XLOC_033204 rbm5 coding upstream 59046 53263854 ~ 53282595 (-)
XLOC_033205 gnb1b coding upstream 100169 53304977 ~ 53334259 (-)
XLOC_033206 si:ch211-161c3.6 coding upstream 168690 53373498 ~ 53391727 (-)
XLOC_033207 mst1 coding upstream 189317 53394125 ~ 53426773 (-)
XLOC_033186 NA non-coding downstream 1112790 52026491 ~ 52034656 (-)
XLOC_033181 NA non-coding downstream 1605958 51528763 ~ 51541488 (-)
XLOC_033179 BX530017.1 non-coding downstream 2390998 50754501 ~ 50756448 (-)
XLOC_033212 NA non-coding upstream 960124 54164932 ~ 54174073 (-)
XLOC_033220 NA non-coding upstream 1292996 54497804 ~ 54523451 (-)
XLOC_033221 dre-let-7a-6 non-coding upstream 1301650 54506458 ~ 54506586 (-)
XLOC_033222 NA non-coding upstream 1543140 54747948 ~ 54754115 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000340_16061769_16080354 SLC38A3B, SLC38A3 coding CI01000340 null 16061507 ~ 16080354 (-)