XLOC_033231 (ube2c)


Basic Information

Item Value
gene id XLOC_033231
gene name ube2c
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 55287823 ~ 55297274 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064535
GATGTGTTTTAAAAACTCTTGAAGAAATCGGTTAGTGTTGTCGCCCGcattgaacacacacactcacagccgATCAGACGCGATGGCCTCTCAGAATATGGATCCCGCAGCAGCATCGACAGCAACCCTGAAGGGCAGCGAGACCAGCGTGACCGCGTCTAAAGGATCCGTCAGTAAAAGGCTTCAACAAGAGCTGATGACGCTGATGATGTCTGGAGACAAGGGCATTTCAGCTTTCCCAGAGTCTGATAATCTCTTCAAATGGATCGGCACAATAGATGGAGCTCAAGgaacaGTCTATGAAGGTTTGAGGTACAAACTGTCTCTGGAGTTTCCTAGCGGGTACCCGTACAACGCACCTCGGGTGAAATTCATCACTGCTTGTTTTCACCCAAATGTGGATGAGAACGGCATCATCTGCTTAGACATTTTGAAAGACAAGTGGTCTGCGCTATATGACGTTCGCTCCATACTACTGTCCATTCAGAGTCTTCTTGGAGAACCCAACAATGATAGTCCAATGAACTCTACAGCTGCTGAAATGTGGGATGACCAGGAAGCCTTCAAAGCTCATTTGCACGCAACCTACAAGAACTGACTATCAGCATAAACGTCTGCCTCCCTGTTTTATTGGCGTCTCTGTTTTCTTgtttataataatgtaaatttTCTCTAAGggttttgtttgtatattatttcTGTGTTGTATTAAACTGGCTTGAAGAAAACAATTCTGATTGAAATGTGCCTTTTTATGTGAATAAAGAAGGGGAAACATAATGTTAATGCTTGCTGCTTTGATTTATGATATTTACAATATAAAGGTAGTGCACAGCTGATTGGTAACCACCAGTTGCAGAAACAGCCAGTATGTTCTGTACATTTTAAAGGCATTGAtcacccagaaattaaaatttactctTAAT

Function

symbol description
ube2c Predicted to enable DNA binding activity and nucleosome binding activity. Predicted to be active in nucleus. Orthologous to human UBE2C (ubiquitin conjugating enzyme E2 C).

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0031491 nucleosome binding molecular_function
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
ko04120 Ubiquitin mediated proteolysis
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-051030-48 Predicted to enable DNA binding activity and nucleosome binding activity. Predicted to be active in nucleus. Orthologous to human UBE2C (ubiquitin conjugating enzyme E2 C).

Ensembl:

ensembl_id ENSDARG00000114670

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064535 True 926 mRNA 0.42 7 55287823 55297274

Neighbor

gene id symbol gene type direction distance location
XLOC_033230 NA coding downstream 9660 55274006 ~ 55278163 (-)
XLOC_033229 nfatc2b coding downstream 33037 55221490 ~ 55254786 (-)
XLOC_033228 NA coding downstream 258910 55022836 ~ 55028913 (-)
XLOC_033227 NA coding downstream 401112 54876177 ~ 54886711 (-)
XLOC_033226 csrp1b coding downstream 442201 54838269 ~ 54845622 (-)
XLOC_033232 ube2c coding upstream 2237 55299511 ~ 55309190 (-)
XLOC_033233 pcif1 coding upstream 30635 55327909 ~ 55354004 (-)
XLOC_033234 ctsa coding upstream 99533 55396807 ~ 55423220 (-)
XLOC_033235 slc12a5a coding upstream 152026 55449300 ~ 55585423 (-)
XLOC_033236 CR847793.2 coding upstream 249861 55547135 ~ 55547270 (-)
XLOC_033225 CU861466.1 non-coding downstream 472786 54814921 ~ 54815037 (-)
XLOC_033222 NA non-coding downstream 533708 54747948 ~ 54754115 (-)
XLOC_033237 CR847793.1 non-coding upstream 257988 55555262 ~ 55555396 (-)
XLOC_033238 LO017956.1 non-coding upstream 352845 55650119 ~ 55650251 (-)
XLOC_033239 BX470154.1 non-coding upstream 517483 55814757 ~ 55827517 (-)
XLOC_033242 NA non-coding upstream 711904 56009178 ~ 56038817 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000340_17078619_17088012 UBE2C coding CI01000340 null 17078619 ~ 17088012 (-)