XLOC_033233 (pcif1)


Basic Information

Item Value
gene id XLOC_033233
gene name pcif1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 55327909 ~ 55354004 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064537
ATGACGAGTGAAAACCACACAACAATTAAGGCAGACTCGGCATTGGTCATGTCGCCCACCGGGTCCACGTCACAGGCGGCTCCGTTCTCACCCTCGACCAGCAAACCCATCCAAGAGCTGCCAGATGAGCTGATCCAGGCTGGATGGTCAAAATGTTGGAGTAAAAGGGAGAACCGGCCGTATTACTTCAATCGATTCACTAACCAGTCGCTGTGGGAGATGCCTGTCCTGGGACAGCATGATGTCATTtcagATCCTCTGGGATTGAATGCAGCTCCAGCCTCTGGTGAGGCGAATGCTGATGCAGGTCTGGGAAACGGGCAGCGTAAAAGACATCCATCAGAGGATGCTTCTCAAGCAGGCCCTAACAGCTTCAAGAGGCCAAAGGTTGAGATTCCAGCCACTCCAACAACTCCCACTGTCCCCATTTCTCCCAGTACACCAGGAGTAAAACCTTGGGTTAACACCACCACAGATGAGAAACAAGGCCAGGCCAGTACGCCTGCACCTGCACCGTACCGGCCCTCTGTAGTGTACTGGGACCTGGACATTCAGACCAACGCTGTGATTCGAGAGCGAGCCCCAGCGGACCACCTTCCTCCACATCCTGAGATCGAGTTGCAGAGAGCTCAACTCACCACCAAACTCCGGCAGCACTACCATGAGCTGTGCTCTCAGCGGGAGGGCATCGAGCCCCCACGGGAATCCTTCAACCGCTGGCTTCTGGAGAGGAAAGTAGTGGATAAAGGTCTGGATCCTCTCCTGCCCAGTGAATGTGACCCAGTCATCTCTCCGTCCATGTTTAGAGAGATCATGAATGATATCCCCATCAGGCTCTCTCGCATCAAATATAAAGAAGAGGCCAGAAAACTCCTGTTCAAATATGCAGAGGCGGCCAAGAAAATGATCGACTCCAGaaatgcaactCCGGAGAGTCGAAAGGTGGTGAAGTGGAACGTAGAGGACACGATGAACTGGCTGAGACGAGACCATTCTGCCAGCAAGGAGGACTACATGgatCGACTTGAGCATTTACGGAAGCAGTGCGGCCCTCATGTGGCATCGGTGGCAAAGGACTCTGTCGAAGGCATCTGTTCAAAAATCTATCACATTTCTGCAGAATATGTGCGCAGGATTCGACAAGCTCACCTCACTCTACTGAAAGAGTGCAACATTTCTGTGGACGGCACAGAGTCAGCGGAGGTCCAGGACCGCTTGGTTTATTGTTATCCTGTGAGACTGTCCATCCCAGCTCCTCCTCAAACTCGTGTTGAGCTGCACTTTGAGAACGACATCGCTTGTCTTCGGTTTAAAGGAGAAATGGTGAAGGTCAGCCGCGGTCATTTCAACAAACTGGAACTTCTCTATCGATACAGCTGTATTGACGACCCAAGGTTTGAAAAGTTCCTTTCACGCGTGTGGTGCCTTATCAAAAGATACCAGGTAATGTTTGGCTCTGGTGTGAACGAGGGGTCTGGTCTACAGGGGTCTCTTCCTGTTCCCGTCTTTGAGGCGCTCAATAAACAGTTCGGAGTGACGTTCGAGTGTTTCGCTTCTCCTCTAAACTGCTATTTTAAGCAGTTCTGCTCGGCTTTTCCAGACATTGATGGCTTCTTTGGCTCTCGAGGGCCATTTCTCAGCTTTTCTCCAGCCAGTGGCTCTTTCGAGGCGAACCCTCCTTTCTGTGAGGAGCTCATGGATGCCATGGTGACACACTTTGAGGATCTCCTGGGCCGCTCCAGTGAGCCTCTGTCCTTCATCATCTTTGTGCCGGAGTGGCGTGACCCGCCGACTCCTGCTCTGACGCGGATGGAGGCCAGTCGCTTCCGCAGGCACCAGATGACAGTTCCCGCCTTCGAGCACGAGTACCGCAGCGGCTCTCAGCATATCTGCAAAAGAGAAGAGATTTACTACAAGGCCATCCACGGGACGGCTGTCATTTTCCTCCAAAACAATGCTGGCTTTGCCAAATGGGAGCCCACAACGGAGAGAATCCAGGAGCTCCTGGCAGCATACAAAGTGTCCGGGCGTTCGCTGCCCTCACCCGGTCCATCTTCCACTAATACAGGAGAAAAAGACTCCAAACCAGCCCCGGAGCGCACAGCTCCTAGTCAAGACAACAGCAGTCCTGTGGACAAGACTGCACAGGACACAACAAACACTTAG
>TCONS_00064538
GACATTTACAGGTTTTATTTGTGGATTACGAATGACACAGTGAGGATTACAGTttcatttattactttttgtaagcaataaaattcatatttttcCGTGTGAATATACTGTTTAGTATTTATTGACTGTAAATCAAGTACATCAGTAATTGATCAAGTAAATCAATTAGTGTTTTTAATTAtcgtttttattttctcaaaaggTTTTACACTTACATCAAGTATACATGTTAGAGATCACACATCTGAATACACTcacaaatgtaaacacaaatTCTGTACATCCACTTATTCTTTCCGCAGTATATGCTTTCCTATGTGCGCATGTAGATTTGTTAtacatgataataaaaaaataataatttaaataaatacaattaaataagagattttttaaaaatgtaaaaataagtaaataagccaGTAAAATAGGATTTACACATCAGCAACAAAACTATATAGGGTGTGATCCTTCCAATTTTAGGTTATCAGAAAAGTTCAGGTCTATGGGACGTAGATGGTCTCTTTTTCACAGAATGAATTAAATTGTTCCATTTTCTGATTTACAAATGCAGTAATTTGTTCCATTTGATAAATTTCCATTGTAGTTCCCATCCACGCATTTAGGGTAGGACTTTCATATGACAACCATTTTTGGTAATGCTCTTTTTTGGCATCCACCAGCAAAATATTCATTGGATATTTATCCCTTTTTAACCATTCCTCAGTTTTACAGTCAAAGGGTCTCACAAAGtatcacaatatattgtatatggcattgtttttctttccagtatttttaaataactgagCAGTCCCAGAAAATGTGATcgaatttatgatttttaagtATGTGTTAGAGTAAATcttcatttacttttatttgcaAACTTTTTTCATGGGAAATATAcctataaatgttatattttatataattttatttttatgattgggTTTTATTAGCCAAAAATGATTTTGCCActgccaaataaataaacaatttaaataaaactattaaatagtgtttagattttttaatataaaatcaagaaaacaatatatatataaactttaaaatataaaaggaATTGATTTAGAAATGGTTGAAGTAATTCAAATGAATGTgtaaagcactattatatttataACAGTACATTAAATTCAGCAACAGCCAAACAGAAATAGgcctatatattaaaaacaaaagacaCGAGGTTAAAAACATATACtgacatattaaaaatatatataaaaacattttcaggAGAAAAATCAAGAACATTCAAAATAACATTTTCCTATAAATGAACAAACTCCGTTATTTCATTTTACAGATTGAAATTCTGCCTCTCTACAAATGGCGGCGCGGGTTTGACGGCTTCCACTGCGGATAGCAACTAAACCCGCGCCTGCGCATTAACCGCGTCCGAGTGCCCGATACAAGATGGCGGAGTCGGTGGGGAGGGAGAGGCGGAGGCGGGTCCGAACCGAATAGCGCAAAGCCTATTGAGGACTCCAAACAAACCTCTCCAAGACAGGACAAATGAGGAGCTATGACGAGTGAAAACCACACAACAATTAAGGCAGACTCGGCATTGGTCATGTCGCCCACCGGGTCCACGTCACAGGCGGCTCCGTTCTCACCCTCGACCAGCAAACCCATCCAAGAGCTGCCAGATGAGCTGATCCAGGCTGGATGGTCAAAATGTTGGAGTAAAAGGGAGAACCGGCCGTATTACTTCAATCGATTCACTAACCAGTCGCTGTGGGAGATGCCTGTCCTGGGACAGCATGATGTCATTtcagATCCTCTGGGATTGAATGCAGCTCCAGCCTCTGGTGAGGCGAATGCTGATGCAGGTCTGGGAAACGGGCAGCGTAAAAGACATCCATCAGAGGATGCTTCTCAAGCAGGCCCTAACAGCTTCAAGAGGCCAAAGGTTGAGATTCCAGCCACTCCAACAACTCCCACTGTCCCCATTTCTCCCAGTACACCAGGAGTAAAACCTTGGGTTAACACCACCACAGATGAGAAACAAGGCCAGGCCAGTACGCCTGCACCTGCACCGTACCGGCCCTCTGTAGTGTACTGGGACCTGGACATTCAGACCAACGCTGTGATTCGAGAGCGAGCCCCAGCGGACCACCTTCCTCCACATCCTGAGATCGAGTTGCAGAGAGCTCAACTCACCACCAAACTCCGGCAGCACTACCATGAGCTGTGCTCTCAGCGGGAGGGCATCGAGCCCCCACGGGAATCCTTCAACCGCTGGCTTCTGGAGAGGAAAGTAGTGGATAAAGGTCTGGATCCTCTCCTGCCCAGTGAATGTGACCCAGTCATCTCTCCGTCCATGTTTAGAGAGATCATGAATGATATCCCCATCAGGCTCTCTCGCATCAAATATAAAGAAGAGGCCAGAAAACTCCTGTTCAAATATGCAGAGGCGGCCAAGAAAATGATCGACTCCAGaaatgcaactCCGGAGAGTCGAAAGGTGGTGAAGTGGAACGTAGAGGACACGATGAACTGGCTGAGACGAGACCATTCTGCCAGCAAGGAGGACTACATGgatCGACTTGAGCATTTACGGAAGCAGTGCGGCCCTCATGTGGCATCGGTGGCAAAGGACTCTGTCGAAGGCATCTGTTCAAAAATCTATCACATTTCTGCAGAATATGTGCGCAGGATTCGACAAGCTCACCTCACTCTACTGAAAGAGTGCAACATTTCTGTGGACGGCACAGAGTCAGCGGAGGTCCAGGACCGCTTGGTTTATTGTTATCCTGTGAGACTGTCCATCCCAGCTCCTCCTCAAACTCGTGTTGAGCTGCACTTTGAGAACGACATCGCTTGTCTTCGGTTTAAAGGAGAAATGGTGAAGGTCAGCCGCGGTCATTTCAACAAACTGGAACTTCTCTATCGATACAGCTGTATTGACGACCCAAGGTTTGAAAAGTTCCTTTCACGCGTGTGGTGCCTTATCAAAAGATACCAGGTAATGTTTGGCTCTGGTGTGAACGAGGGGTCTGGTCTACAGGGGTCTCTTCCTGTTCCCGTCTTTGAGGCGCTCAATAAACAGTTCGGAGTGACGTTCGAGTGTTTCGCTTCTCCTCTAAACTGCTATTTTAAGCAGTTCTGCTCGGCTTTTCCAGACATTGATGGCTTCTTTGGCTCTCGAGGGCCATTTCTCAGCTTTTCTCCAGCCAGTGGCTCTTTCGAGGCGAACCCTCCTTTCTGTGAGGAGCTCATGGATGCCATGGTGACACACTTTGA

Function

symbol description
pcif1 Enables S-adenosyl-L-methionine binding activity and mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity. Involved in mRNA methylation. Predicted to be active in nucleus. Orthologous to human PCIF1 (phosphorylated CTD interacting factor 1).

GO:

id name namespace
GO:0045727 positive regulation of translation biological_process
GO:0032259 methylation biological_process
GO:0005634 nucleus cellular_component
GO:0016422 mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0008168 methyltransferase activity molecular_function
GO:0099122 RNA polymerase II C-terminal domain binding molecular_function
GO:1904047 S-adenosyl-L-methionine binding molecular_function

KEGG:

id description
ko01009 Protein phosphatases and associated proteins

ZFIN:

id description
ZDB-GENE-120920-2 Enables S-adenosyl-L-methionine binding activity and mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity. Involved in mRNA methylation. Predicted to be active in nucleus. Orthologous to human PCIF1 (phosphorylated CTD interacting factor 1).

Ensembl:

ensembl_id ENSDARG00000099084

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064537 False 2166 mRNA 0.53 15 55327909 55347616
TCONS_00064538 True 3273 mRNA 0.42 14 55332460 55354004

Neighbor

gene id symbol gene type direction distance location
XLOC_033232 ube2c coding downstream 18719 55299511 ~ 55309190 (-)
XLOC_033231 ube2c coding downstream 30635 55287823 ~ 55297274 (-)
XLOC_033230 NA coding downstream 49746 55274006 ~ 55278163 (-)
XLOC_033229 nfatc2b coding downstream 73123 55221490 ~ 55254786 (-)
XLOC_033228 NA coding downstream 298996 55022836 ~ 55028913 (-)
XLOC_033234 ctsa coding upstream 42803 55396807 ~ 55423220 (-)
XLOC_033235 slc12a5a coding upstream 95296 55449300 ~ 55585423 (-)
XLOC_033236 CR847793.2 coding upstream 193131 55547135 ~ 55547270 (-)
XLOC_033237 CR847793.1 coding upstream 201258 55555262 ~ 55555396 (-)
XLOC_033238 LO017956.1 coding upstream 296115 55650119 ~ 55650251 (-)
XLOC_033227 NA non-coding downstream 441198 54876177 ~ 54886711 (-)
XLOC_033225 CU861466.1 non-coding downstream 512872 54814921 ~ 54815037 (-)
XLOC_033222 NA non-coding downstream 573794 54747948 ~ 54754115 (-)
XLOC_033239 BX470154.1 non-coding upstream 460753 55814757 ~ 55827517 (-)
XLOC_033242 NA non-coding upstream 655174 56009178 ~ 56038817 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00008014 pcif1 coding CM030123.1 CM030123.1 39528389 ~ 39541946 (-)