RNA id: TCONS_00064538


Basic Information

Item Value
RNA id TCONS_00064538
length 3273
RNA type mRNA
GC content 0.42
exon number 14
gene id XLOC_033233
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 55327909 ~ 55354004 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GACATTTACAGGTTTTATTTGTGGATTACGAATGACACAGTGAGGATTACAGTttcatttattactttttgtaagcaataaaattcatatttttcCGTGTGAATATACTGTTTAGTATTTATTGACTGTAAATCAAGTACATCAGTAATTGATCAAGTAAATCAATTAGTGTTTTTAATTAtcgtttttattttctcaaaaggTTTTACACTTACATCAAGTATACATGTTAGAGATCACACATCTGAATACACTcacaaatgtaaacacaaatTCTGTACATCCACTTATTCTTTCCGCAGTATATGCTTTCCTATGTGCGCATGTAGATTTGTTAtacatgataataaaaaaataataatttaaataaatacaattaaataagagattttttaaaaatgtaaaaataagtaaataagccaGTAAAATAGGATTTACACATCAGCAACAAAACTATATAGGGTGTGATCCTTCCAATTTTAGGTTATCAGAAAAGTTCAGGTCTATGGGACGTAGATGGTCTCTTTTTCACAGAATGAATTAAATTGTTCCATTTTCTGATTTACAAATGCAGTAATTTGTTCCATTTGATAAATTTCCATTGTAGTTCCCATCCACGCATTTAGGGTAGGACTTTCATATGACAACCATTTTTGGTAATGCTCTTTTTTGGCATCCACCAGCAAAATATTCATTGGATATTTATCCCTTTTTAACCATTCCTCAGTTTTACAGTCAAAGGGTCTCACAAAGtatcacaatatattgtatatggcattgtttttctttccagtatttttaaataactgagCAGTCCCAGAAAATGTGATcgaatttatgatttttaagtATGTGTTAGAGTAAATcttcatttacttttatttgcaAACTTTTTTCATGGGAAATATAcctataaatgttatattttatataattttatttttatgattgggTTTTATTAGCCAAAAATGATTTTGCCActgccaaataaataaacaatttaaataaaactattaaatagtgtttagattttttaatataaaatcaagaaaacaatatatatataaactttaaaatataaaaggaATTGATTTAGAAATGGTTGAAGTAATTCAAATGAATGTgtaaagcactattatatttataACAGTACATTAAATTCAGCAACAGCCAAACAGAAATAGgcctatatattaaaaacaaaagacaCGAGGTTAAAAACATATACtgacatattaaaaatatatataaaaacattttcaggAGAAAAATCAAGAACATTCAAAATAACATTTTCCTATAAATGAACAAACTCCGTTATTTCATTTTACAGATTGAAATTCTGCCTCTCTACAAATGGCGGCGCGGGTTTGACGGCTTCCACTGCGGATAGCAACTAAACCCGCGCCTGCGCATTAACCGCGTCCGAGTGCCCGATACAAGATGGCGGAGTCGGTGGGGAGGGAGAGGCGGAGGCGGGTCCGAACCGAATAGCGCAAAGCCTATTGAGGACTCCAAACAAACCTCTCCAAGACAGGACAAATGAGGAGCTATGACGAGTGAAAACCACACAACAATTAAGGCAGACTCGGCATTGGTCATGTCGCCCACCGGGTCCACGTCACAGGCGGCTCCGTTCTCACCCTCGACCAGCAAACCCATCCAAGAGCTGCCAGATGAGCTGATCCAGGCTGGATGGTCAAAATGTTGGAGTAAAAGGGAGAACCGGCCGTATTACTTCAATCGATTCACTAACCAGTCGCTGTGGGAGATGCCTGTCCTGGGACAGCATGATGTCATTtcagATCCTCTGGGATTGAATGCAGCTCCAGCCTCTGGTGAGGCGAATGCTGATGCAGGTCTGGGAAACGGGCAGCGTAAAAGACATCCATCAGAGGATGCTTCTCAAGCAGGCCCTAACAGCTTCAAGAGGCCAAAGGTTGAGATTCCAGCCACTCCAACAACTCCCACTGTCCCCATTTCTCCCAGTACACCAGGAGTAAAACCTTGGGTTAACACCACCACAGATGAGAAACAAGGCCAGGCCAGTACGCCTGCACCTGCACCGTACCGGCCCTCTGTAGTGTACTGGGACCTGGACATTCAGACCAACGCTGTGATTCGAGAGCGAGCCCCAGCGGACCACCTTCCTCCACATCCTGAGATCGAGTTGCAGAGAGCTCAACTCACCACCAAACTCCGGCAGCACTACCATGAGCTGTGCTCTCAGCGGGAGGGCATCGAGCCCCCACGGGAATCCTTCAACCGCTGGCTTCTGGAGAGGAAAGTAGTGGATAAAGGTCTGGATCCTCTCCTGCCCAGTGAATGTGACCCAGTCATCTCTCCGTCCATGTTTAGAGAGATCATGAATGATATCCCCATCAGGCTCTCTCGCATCAAATATAAAGAAGAGGCCAGAAAACTCCTGTTCAAATATGCAGAGGCGGCCAAGAAAATGATCGACTCCAGaaatgcaactCCGGAGAGTCGAAAGGTGGTGAAGTGGAACGTAGAGGACACGATGAACTGGCTGAGACGAGACCATTCTGCCAGCAAGGAGGACTACATGgatCGACTTGAGCATTTACGGAAGCAGTGCGGCCCTCATGTGGCATCGGTGGCAAAGGACTCTGTCGAAGGCATCTGTTCAAAAATCTATCACATTTCTGCAGAATATGTGCGCAGGATTCGACAAGCTCACCTCACTCTACTGAAAGAGTGCAACATTTCTGTGGACGGCACAGAGTCAGCGGAGGTCCAGGACCGCTTGGTTTATTGTTATCCTGTGAGACTGTCCATCCCAGCTCCTCCTCAAACTCGTGTTGAGCTGCACTTTGAGAACGACATCGCTTGTCTTCGGTTTAAAGGAGAAATGGTGAAGGTCAGCCGCGGTCATTTCAACAAACTGGAACTTCTCTATCGATACAGCTGTATTGACGACCCAAGGTTTGAAAAGTTCCTTTCACGCGTGTGGTGCCTTATCAAAAGATACCAGGTAATGTTTGGCTCTGGTGTGAACGAGGGGTCTGGTCTACAGGGGTCTCTTCCTGTTCCCGTCTTTGAGGCGCTCAATAAACAGTTCGGAGTGACGTTCGAGTGTTTCGCTTCTCCTCTAAACTGCTATTTTAAGCAGTTCTGCTCGGCTTTTCCAGACATTGATGGCTTCTTTGGCTCTCGAGGGCCATTTCTCAGCTTTTCTCCAGCCAGTGGCTCTTTCGAGGCGAACCCTCCTTTCTGTGAGGAGCTCATGGATGCCATGGTGACACACTTTGA

Function

GO:

id name namespace
GO:0045727 positive regulation of translation biological_process
GO:0032259 methylation biological_process
GO:0005634 nucleus cellular_component
GO:0016422 mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0008168 methyltransferase activity molecular_function
GO:0099122 RNA polymerase II C-terminal domain binding molecular_function
GO:1904047 S-adenosyl-L-methionine binding molecular_function

KEGG:

id description
ko01009 Protein phosphatases and associated proteins

ZFIN:

id description
ZDB-GENE-120920-2 Enables S-adenosyl-L-methionine binding activity and mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity. Involved in mRNA methylation. Predicted to be active in nucleus. Orthologous to human PCIF1 (phosphorylated CTD interacting factor 1).

Ensembl:

ensembl_id ENSDART00000165911

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065253 lncRNA downstream 54297 55274006 ~ 55278163 (-) True XLOC_033230
TCONS_00065252 lncRNA downstream 303547 55022836 ~ 55028913 (-) True XLOC_033228
TCONS_00065251 lncRNA downstream 445749 54881724 ~ 54886711 (-) True XLOC_033227
TCONS_00065250 lncRNA downstream 445811 54876177 ~ 54886649 (-) False XLOC_033227
TCONS_00064761 lncRNA downstream 489031 54841396 ~ 54843429 (-) True XLOC_033226
TCONS_00064545 lncRNA upstream 460753 55814757 ~ 55827517 (-) True XLOC_033239
TCONS_00064762 lncRNA upstream 655174 56009178 ~ 56038817 (-) True XLOC_033242
TCONS_00065254 lncRNA upstream 707717 56061721 ~ 56073926 (-) True XLOC_033243
TCONS_00065255 lncRNA upstream 976267 56330271 ~ 56567912 (-) False XLOC_033245
TCONS_00065256 lncRNA upstream 1033450 56387454 ~ 56389460 (-) True XLOC_033246
TCONS_00064536 mRNA downstream 23270 55299511 ~ 55309190 (-) True XLOC_033232
TCONS_00064535 mRNA downstream 35186 55287823 ~ 55297274 (-) True XLOC_033231
TCONS_00064534 mRNA downstream 77674 55221490 ~ 55254786 (-) True XLOC_033229
TCONS_00064532 mRNA downstream 486838 54838269 ~ 54845622 (-) False XLOC_033226
TCONS_00064539 mRNA upstream 42803 55396807 ~ 55399214 (-) False XLOC_033234
TCONS_00064540 mRNA upstream 42804 55396808 ~ 55423220 (-) True XLOC_033234
TCONS_00064541 mRNA upstream 95296 55449300 ~ 55585423 (-) True XLOC_033235
TCONS_00064546 mRNA upstream 498270 55852274 ~ 55864687 (-) True XLOC_033240
TCONS_00064547 mRNA upstream 555791 55909795 ~ 55997350 (-) False XLOC_033241
TCONS_00064531 other downstream 517423 54814921 ~ 54815037 (-) True XLOC_033225
TCONS_00064525 other downstream 825282 54507105 ~ 54507178 (-) True XLOC_033220
TCONS_00064524 other downstream 825874 54506458 ~ 54506586 (-) True XLOC_033221
TCONS_00064499 other downstream 2052530 53273836 ~ 53279930 (-) False XLOC_033204
TCONS_00064492 other downstream 2299349 53032996 ~ 53033111 (-) True XLOC_033199
TCONS_00064542 other upstream 193131 55547135 ~ 55547270 (-) True XLOC_033236
TCONS_00064543 other upstream 201258 55555262 ~ 55555396 (-) True XLOC_033237
TCONS_00064544 other upstream 296115 55650119 ~ 55650251 (-) True XLOC_033238
TCONS_00064551 other upstream 1185005 56539009 ~ 56539125 (-) True XLOC_033247
TCONS_00064553 other upstream 1909506 57263510 ~ 57263645 (-) True XLOC_033251

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00008014 True 4732 mRNA 0.53 16 CM030123.1 39528389 ~ 39541946 (-)