RNA id: TCONS_00065252


Basic Information

Item Value
RNA id TCONS_00065252
length 5521
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id XLOC_033228
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 55022836 ~ 55028913 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGCTATAAATCACATTTTGGATAGATTCAGCACTTAATTTGCAAGACTCAAGAAAGAACAGAGTTAACGAACGTTGTGGTTTATTATGACAGATGGACAACATCTCAGTGGTCATTTTTGCGAACATCCAAAGTGGCCAGTTCTCATGTATACCGGACCACTCCATCATTAACAAAAGCACAAATCTTCCATACAAACCACATTTCTTCATGacaatatgtgtttgttttttcttcttaaatGATTGTTGTTGCAGGGCCACGCTATGTACAATGTTTACATTAATAACGTTCTGTACAAAATGAAACCGAAGTTGTACAAACAATCATTTGGGGGGGAAATTACAAAGCAATATCATTCCTTTTACGACCCCAAATTAGGTAGAACACATCCGTAATTCTGCTTCACACCAAGGTGACATGCGTATACGACATTTAGAAACCCAATGCACGTTTTGAATTCTATCTTATAACCTTTCCTgcattaatattggattttttttaatcgatatcAAGCACTGCATGAAGTGAAGGGACTATTCAGCAACTTCTCACCACTCTGTGTCTGTAATATCCATACATTGGtcctcttattttattttatttttttatattattttattatttttattttatttgttttatttttttatttgatttgtttaatttctttttgttttattttttattttaatttctttttattttatttatgttttattttaatttatttcatttctttttattttatttatttttgattttatgttttttcttctttttcttttatttttatttgtatagttattttattttttatttattgttaatctcTTTCTATTTCAttcaataaaattttattttattaaaagtgtAAGTTCTGTTACTGAGGCCAGAAGGGGGCgctcaatctgtggtctgtgtgggccCTAAtcccccagtatattgatgggactctatactgctcagtgagcgccgtcttttgaatgtaactgaggtcctgactctctgtggtcattaacaatcctaggatgtccttcgaaaaagagttgGGGTTTAACCCCGGTATCTCAGCCAAATTTGCCcgctggcctttgtccatcatggcctccaaaccatccccatatcataactggcttcatctcctctccaccaattagctggtCTGTAGTGTGTGGACTGGcccaatatggctgccatcgcatcatccaggtggatgctgggTGGTGGacgaggagattcccccccaaaaatgtgtgtaaagcactttgagtgtccagaaaagtgctatataaatgtaagtaattattgttattattaaacctGATATGAAAGCCCCATCATCCATACATCCAACATACAATCAATACCCCTCTCGGTTCCTGACTCTGTTCAACACAAATTATTGCAACAATATAATATAACTCGCATTAAAAAAGTGCATTTAAGAGTGAAAAAGCAACAGATAAACAgtaaaatcaatgtaaaaaaaatccagtttTACCAATCACCATCCATGCGCTGTCGTCACAATCCCAGCACAGACAAACTAGACAGTAAAAAGTTGCTGAATTGTCTCGATAAATGGGTCTTTGCACAACACGGCACAGCTATCACACGGTTACAGGCACAATAACATGATGCAGACAGTGCACAGCGGCTTTAGTCACACTTCAAATGAGATTTCTACCACCGAATGAGATTTAGTCCCTCAACGATTAGCTTTATTCGCTGATCCAGATTCAATATCCAGGTAATTCAGCATTGAGGCGCTGTTATGAAATGGAGCATTCGCCACATTGCACAAATGCCATCTCTGAAATGTGCACAACAAAAGCCATTGACACACTGTCTTAAGTCTGGAATGTAATCAAATATAAATGTCACATATTAAGACTTTaaatcagcagcagcagcagcgcaaCTAAAGAAGGCTAAAAGAAAACCCAATCGTTTGGCCATCTTATGAATCTCTCTATTTGGCTAATAAACTCCACAAACCCGCAGAGAAGGAACTACGGAAATCATATTTACACAGTAATGATATTCTGATATATGAGATGCGATATAAAGGAGTGGAATGATttgagtaacttttttttttagcttacatCTCACCTACATGCATGTTTCGGATAGTAGATTCAGATGGGAAATTACTGGTCCACCACTGCTTTCTGTGAACAAATCCTCTTCTGTAAGagatatatacttatatatattaaGTGATGAGATTGATATTGATTATAACGAAATGTTTGATATGTTAAGTGTAGGAGATTCGTTTACTTTGATAGTGATTTTgtaatggatgtgtgtgtgtgtgtttgtgtgtgtgtgatgattaaACTACTACTATTTGATGCTTATTGTAACACTAAAATTAATTATTCAACTAAAATGATCCCTTGTTCCTATAGatgctcttaaagggatagttcacccaaaaatgtaattatgtcATATATTCATCCTGTTAGTCTCAATCCTAAAtgtccttcttctgttgaacacaaagagaGATATACTGAAGACTAAAtcaaccattgacttttatagtattttgaTGTAAATGGCTGGATTTTTCCAGCAGCCTTCAGAATATCGTCTTTCAAGAGTTAAcacttacactcactggccattttgttaggtacaccttactacagTAGTACCAGGCttgaccccttttgccttcagaactgccttaatccttggtggcaaagattcaagaaggtactggaaatatttctcagagattttgctccatattgacatgatagtatcacacaattgctgcagatttgtcggctgcacatccatgatgtgaatctcatattccaccatatcccaaaggtgctctattggattgacatctggtgactgtggaggccatttgagtacagtaaactcattgccatgtttaagaaaccagtctgagatgatgattcacactttatgacatgccgCATTATCtggctggaagtagccatcagaagatgggtacactgtggtcataaagggatggacatggtcagtaacaatactcaggtaggctgtggtgttgacacaatgctcaattggtactaatgggcccaaagtgttccaagaaaatatcccccagaccattacaccaccaccagcaacctgaaccattgatacaaggcaggatggatccatgctttcatgttgttgacgccaaattctgacccgaccatctgaatgtcgcagcagaaatggagactaatcagaccagacaacgtttccccaatcttctattgtccagttttggtgagcctgttcggtatgaactgcagcagatcgtcttgaccatgtctgcatgcctaaatgcacttttgagttgctgccatgtgattggctgatttgaaatttgcGTTAAGCAGTTGGAAAggtctacctaataaacaggtgatcctctcaaaattagtttataaatcaacttcactttgtgttcaacagaagaacaaaaTTCATAAAAAGCTACTTGAGTGTGTGTCCACACCAAAATTATCAGTTTATGATGAACCATCTCTTTAGAGACTACGATGATGAGTGATGTCAAGTGCGATTTTTGCTAAACCGAGACGTTTGGAAACCTTTTTCCTTAATATTAGAGTTAGCACCAAATAATCAAAGATAATCTTGGTTGGGGCAATCCTCTCCAAATAAAAGGCTCATACAGAATAAAGCACTGAGTATTTGGTTTCCTACATTTGCACCATTTGCTACAAAGAGAGCAGTTAACTGAGAAGATAGACAGCACTATATTGAATCTAACTAGAGAGGCCTGAGATAACCAAACCCCTGAGCTGAGATCAGTGTCAAAGCCGAGTCAGAAACGTCTCTACAGAACCAGTAAATCATAGTGCAGAGAAATAGTCAGTTTGTGATCTGGAACGTCTCTCTGGACACTAATTGTCTTTACAGCATGTTAGTGAGGTGCGCTTGAACACAAACTTGAGTTTTGAGAACACTGCCCCCTAGAGGGAGTATCACCTTTTAAAACAGGATGCAGAATTGTCGTTTTGATTTGGAATGAAGTATAATTAAAGTGGTACTACTGTAAAATTAAAGTGTTACTTCATGTCCTAACTATACCCAATGCAGCACTGTTAAACCAAGTTTTTTGTCTTTATCATACATAGCAATGCGCAAAATTCTTATTTTagaaacagtttctatttctgcgacattGCAGCAAAAcgacagcataaactactatgacaatgatcacctcaggtactgattatgtgcttaaTTCAGCTGtaaatgctaccaatgtgagtttaaatactattttacatgacatttattgccatactactgaaagcagctgcagatagttcacctcagatcttgtaaataaaataacaagcagaccattaaaaaaatgaaagtcaGAACTGCGACTCCAAAACCAACAaaaccaacaacatcagtcactcagcttatgtacttttattattgttaaatatacTAACTACCTGTTtatctaatatatataatgtCTAAGTTTTGTTTTAACCATCTGCGACAGCAATGCACAcattttctattttagaaacagttttttttttctgtgatgtcacagcaaaacaacaacataaactaCTATGTCAATAATCGCCTCAGGTAATGTGCTTAATTCAGCGTTAAATCttaccaatgtgagtttgaacaCTATTTTACATGACCATTAACTAGCAGACAGTCTGAAAATTAAAGTCAGAACTGTGACTTTTCTGTCACGTAGCGTTTGGTGCTTGTTACTGCTTGTCACTGGGACCTTGTCACATTGCATGTAGTTAGGACACAGTGTGTTTACTTAGTTTAAAAAATTAGCTGCATTGTAATAAATATCTATTGATCGGGGGTGTTTTCCTTTAGTTTACACTTCTGAATCGCATTTTGAGACACTTCTTGTCACCAATTTTGGGATTCTTTCTGTCCACTTTCAAACTTGGATATTTTAGagtaattgaatttttttaaaggattaaGTTAAAGaagttaaaacaatatattgtacataaaaagcctgatctcatgagaaaactcAAGTGATTTATGTTTAGTCAGTTTAGTGGAGTCGTACGAAAatctacaattttaaaaaggaggcgtggcacttaaCCCCTCCCCCCTAAATCCAACTGTTGTTTGGGGATAagtaaatcgtactaaattttatGAATGAGATcgcacaaattagccactaaatcaaaaagttacgaattgctgtgagattgtgttgacatAACATATTgatataaacttaaaattaaacttaaaattaaaggAGACTCAATATTTTTTTGTGACTTAATTTATATGAAAATCCTAGACAGTCatttcaaactaataaaaattaccttttttaacttttcaataATAAAAGTTGGATCTTCAAGAACAGCTCATGCATCTtttcagtaaataaaaatgttaaacaaagGGTTTTGAATGAtattatgataaaataaataaaaaatgtagaattgata

Function

GO:

id name namespace
GO:0010564 regulation of cell cycle process biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065251 lncRNA downstream 136125 54881724 ~ 54886711 (-) True XLOC_033227
TCONS_00065250 lncRNA downstream 136187 54876177 ~ 54886649 (-) False XLOC_033227
TCONS_00064761 lncRNA downstream 179407 54841396 ~ 54843429 (-) True XLOC_033226
TCONS_00064760 lncRNA downstream 196825 54818498 ~ 54826011 (-) True XLOC_033224
TCONS_00065248 lncRNA downstream 268721 54747948 ~ 54754115 (-) False XLOC_033222
TCONS_00065253 lncRNA upstream 245093 55274006 ~ 55278163 (-) True XLOC_033230
TCONS_00064545 lncRNA upstream 785844 55814757 ~ 55827517 (-) True XLOC_033239
TCONS_00064762 lncRNA upstream 980265 56009178 ~ 56038817 (-) True XLOC_033242
TCONS_00065254 lncRNA upstream 1032808 56061721 ~ 56073926 (-) True XLOC_033243
TCONS_00065255 lncRNA upstream 1301358 56330271 ~ 56567912 (-) False XLOC_033245
TCONS_00064532 mRNA downstream 177214 54838269 ~ 54845622 (-) False XLOC_033226
TCONS_00064533 mRNA downstream 177753 54838511 ~ 54845083 (-) False XLOC_033226
TCONS_00064529 mRNA downstream 196775 54806936 ~ 54826061 (-) False XLOC_033224
TCONS_00064530 mRNA downstream 206269 54807325 ~ 54816567 (-) False XLOC_033224
TCONS_00064528 mRNA downstream 206950 54805136 ~ 54815886 (-) False XLOC_033224
TCONS_00064534 mRNA upstream 192577 55221490 ~ 55254786 (-) True XLOC_033229
TCONS_00064535 mRNA upstream 258910 55287823 ~ 55297274 (-) True XLOC_033231
TCONS_00064536 mRNA upstream 270598 55299511 ~ 55309190 (-) True XLOC_033232
TCONS_00064537 mRNA upstream 298996 55327909 ~ 55347616 (-) False XLOC_033233
TCONS_00064538 mRNA upstream 303547 55332460 ~ 55354004 (-) True XLOC_033233
TCONS_00064531 other downstream 207799 54814921 ~ 54815037 (-) True XLOC_033225
TCONS_00064525 other downstream 515658 54507105 ~ 54507178 (-) True XLOC_033220
TCONS_00064524 other downstream 516250 54506458 ~ 54506586 (-) True XLOC_033221
TCONS_00064499 other downstream 1742906 53273836 ~ 53279930 (-) False XLOC_033204
TCONS_00064492 other downstream 1989725 53032996 ~ 53033111 (-) True XLOC_033199
TCONS_00064542 other upstream 518222 55547135 ~ 55547270 (-) True XLOC_033236
TCONS_00064543 other upstream 526349 55555262 ~ 55555396 (-) True XLOC_033237
TCONS_00064544 other upstream 621206 55650119 ~ 55650251 (-) True XLOC_033238
TCONS_00064551 other upstream 1510096 56539009 ~ 56539125 (-) True XLOC_033247
TCONS_00064553 other upstream 2234597 57263510 ~ 57263645 (-) True XLOC_033251

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
eurasian perch (Perca fluviatilis) TU35799 True 697 lncRNA 0.44 1 NC_053114.1 11564684 ~ 11565380 (-)
striped catfish (Pangasianodon hypophthalmus) TU35799 True 6742 lncRNA 0.48 2 NC_047596.1 20104252 ~ 20112518 (-)