RNA id: TCONS_00064530


Basic Information

Item Value
RNA id TCONS_00064530
length 537
RNA type mRNA
GC content 0.48
exon number 5
gene id XLOC_033224
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 54805136 ~ 54826061 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGAAAAAGTCCAAGATCTCTGCATCTCGCAAGCTGATGCTAAAGAGTCTTATGGTGGCTAAAGCGAAGGAGGAGTTAGAACAAGAGCTGGCAGATAAGGAAGACGAGAAGGAGAAATATCTTTCTGAGAAAGCTCCTCAGCTGCAGACTAGTGGGATGTCCTTTGCTGAGCTACAGGAGCTGTGTCGAGAACTACATGCTAAAATCGATGTGGTGGATGAAGAGCGATACGACATTGAGGCGAAAGTACTTCACAACACAAGAGAAATTAAGGATCTGAACATCAAAGTCCTGGATCTGAGGGGTAAATTCAAACGCCCCACCCTGAGGAGAGTCCGGGTGTCGGCCGACGCCATCCTGCGCTCCCTGCTGGGCTCCAAACACAAGGTGTCCATGGACCTCAGAGCAAACCTTAAATCTGTCAAGAAGGAAGACACAGAGAAGGAAAAGACGGTGGAGGTCAGTGACTGGAGGAAGAATGTGGAGGCCATGTCtggaatggaaggaaggaagaaaatgTTTGATGCAGCACAATAA

Function

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0006936 muscle contraction biological_process
GO:0003009 skeletal muscle contraction biological_process
GO:0060048 cardiac muscle contraction biological_process
GO:0005861 troponin complex cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041212-37 Acts upstream of or within heart development. Predicted to be part of troponin complex. Is expressed in cardiovascular system; lateral plate mesoderm; and musculature system. Orthologous to human TNNI1 (troponin I1, slow skeletal type).

Ensembl:

ensembl_id ENSDART00000150079

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065248 lncRNA downstream 53210 54747948 ~ 54754115 (-) False XLOC_033222
TCONS_00065249 lncRNA downstream 53452 54750932 ~ 54753873 (-) True XLOC_033222
TCONS_00065245 lncRNA downstream 283874 54497804 ~ 54523451 (-) False XLOC_033220
TCONS_00065244 lncRNA downstream 284072 54497804 ~ 54523253 (-) False XLOC_033220
TCONS_00064760 lncRNA upstream 1931 54818498 ~ 54826011 (-) True XLOC_033224
TCONS_00064761 lncRNA upstream 24829 54841396 ~ 54843429 (-) True XLOC_033226
TCONS_00065250 lncRNA upstream 59610 54876177 ~ 54886649 (-) False XLOC_033227
TCONS_00065251 lncRNA upstream 65157 54881724 ~ 54886711 (-) True XLOC_033227
TCONS_00065252 lncRNA upstream 206269 55022836 ~ 55028913 (-) True XLOC_033228
TCONS_00064526 mRNA downstream 11253 54761141 ~ 54796072 (-) True XLOC_033223
TCONS_00064523 mRNA downstream 320915 54481941 ~ 54486410 (-) True XLOC_033219
TCONS_00064522 mRNA downstream 341948 54459413 ~ 54465377 (-) True XLOC_033218
TCONS_00064521 mRNA downstream 362396 54438355 ~ 54444929 (-) True XLOC_033217
TCONS_00064520 mRNA downstream 373330 54430413 ~ 54433995 (-) True XLOC_033216
TCONS_00064532 mRNA upstream 21702 54838269 ~ 54845622 (-) False XLOC_033226
TCONS_00064533 mRNA upstream 21944 54838511 ~ 54845083 (-) False XLOC_033226
TCONS_00064534 mRNA upstream 404923 55221490 ~ 55254786 (-) True XLOC_033229
TCONS_00064535 mRNA upstream 471256 55287823 ~ 55297274 (-) True XLOC_033231
TCONS_00064536 mRNA upstream 482944 55299511 ~ 55309190 (-) True XLOC_033232
TCONS_00064525 other downstream 300147 54507105 ~ 54507178 (-) True XLOC_033220
TCONS_00064524 other downstream 300739 54506458 ~ 54506586 (-) True XLOC_033221
TCONS_00064499 other downstream 1527395 53273836 ~ 53279930 (-) False XLOC_033204
TCONS_00064492 other downstream 1774214 53032996 ~ 53033111 (-) True XLOC_033199
TCONS_00064491 other downstream 1883836 52923373 ~ 52923489 (-) True XLOC_033198
TCONS_00064542 other upstream 730568 55547135 ~ 55547270 (-) True XLOC_033236
TCONS_00064543 other upstream 738695 55555262 ~ 55555396 (-) True XLOC_033237
TCONS_00064544 other upstream 833552 55650119 ~ 55650251 (-) True XLOC_033238
TCONS_00064551 other upstream 1722442 56539009 ~ 56539125 (-) True XLOC_033247
TCONS_00064553 other upstream 2446943 57263510 ~ 57263645 (-) True XLOC_033251

Expression Profile

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