RNA id: TCONS_00064540


Basic Information

Item Value
RNA id TCONS_00064540
length 2028
RNA type mRNA
GC content 0.44
exon number 15
gene id XLOC_033234
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 55396807 ~ 55423220 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGAGTTTTTAGTCTACTTAATTTCCCAGCCGGTTGGCGTATCGTTTCTTTTTCCACACCTGGGAAGATGCATCTTGTGTTGGTGTGTTTGCTGCTGGGGCTTCTGGAGGCGTTTGGAGCTCCAGATGCGGATGAGATCAAATATCTGCCTGGACTCTCCAAACAGCCCAGCTTCAGACATTATTCTGGATACTTCAATGTGGCGGACAACAAGCACCTTCACTACTGGTTTGTTGAGTCTCAGAAAGATCCGGTCAGCAGTCCGGTTGTTCTGTGGCTGAATGGAGGTCCGGGATGCAGCTCTATGGATGGTTTACTCACTGAACACGGCCCTTTTTTGATCCAAGATGATGGTGCAACTCTAGAATATAATCCTTATGCTTGGAACAAGATTGCAAATGTTTTATACCTGGAGTCACCAGCAGGTGTCGGCTTCTCCTACTCTGATGACAAGCAGTACACAACCAATGACACTGAGGTGGCCATGAACAACTACTTGGCTCTCAAAGCGTTTTTCCAGTTGTTTCCTGAGTTCAGCAAAAACGAGTTTTTCCTGACTGGAGAGAGTTATGGAGGGATTTACATTCCCACATTGGCTGAGATAGTCATGGAAGACAGCAGCATCAATTTAAAGGGGATTGCTGTTGGAAATGGCTTGTCTAGTTATGAGCTGAATGACAACTCTCTGGTCTATTTTGCATACTATCATGGACTTCTTGGGACCAGcttGTGGAATGACCTGCAGAAATTCTGCTGCAAAGATGGAGTGTGTAATTTCTACGACAACCAGGATGTGAACTGCTCCTCTTCTGTCAACACAGTTCAAGTAATTGTCTATCAGTCTGGACTCAACATGTATAATCTGTATGCACCCTGTCCAGGAGGAGTTGGCCAGAGATTTGGCTTTGAAAATGGCCAGTTTGTCATCCGAGACCTGGGACACCATTTCATCAACCATCAGTGGAGCAAAGCACAGAGCGAGAAAATGCGAGGAGTGGTGTCTCTGTTTAAATCTACAAAGCTGGATCCTCCATGCACAAACTCCACTCCATCAACACTGTATCTCAATAACCCGCTGGTCAAGTCTGCGCTTCACATCTCTCCTAATGCTCTGGACTGGGTCATCTGCAGCTCTGAAGTCAATCTGAACTACAACCGGCTGTTCATGGATGTGAAGAAACAATACCTGAAGCTTCTTGGAGCGCTCAAATACCGTGTGCTGGTGTATAATGGAGATGTGGACATGGCCTGCAATTTTCTAGGAGACGAGTGGTTTGTGGAGTCGCTCCAGCAAGAGGTTCAGGTGCAGCGCAGACCATGGATTTATTTCAATGGCGAGTCTCAGCAGATCGGGGGCTTTGTCAAGGAATTTACCAACCTGGCTTTCATCACAGTAAAGGGTTCTGGTCACATGGTTCCCACCGATAAACCAATAGCAGCGTTCACAATGTTCAGCCGCTTCATCACCAAACAGCCTTACTAGAAAATACATGCACACTCACTCAGGCCTTCTACTGTGCTTTTTAAATCTGAATTTGCACTGTCACACGGGTAAAATGATTGAAATGTGGACCACTGACTGTTCCTCTCACCATTTAAAAGCGATCACACCTTCTGTTGGAGTTTTAAGTGCTTTAGTCTTGTGAACTAAATGAACCTGCTGTACATGCAGTAATGAGCGATTCACCGCCTGTACGCCACTGCTTCCAATCAAATGTGATTTAAAGACAAAGATGCGGAGTGTTTGAGTTTAAAGTCAATCCGATGACTATTTTGAGCGATGGATGATGCACATATTGCACAATTTTAGCTTCAATATTAAAGCATAAAGAGTAGCCTTTTTTAAAAGTCATTGCACAGATTATTTTTGTCGTGTTTCTATTAATGCCACACTGTGATGCTCAGTTTAAAACTATTCCTGCAACCTGCGGTACGTTTTTGTGTGCTTTTATAAGGGAATAACATCTGtggctttctttctttttttttctcccaatgtTCGTTTTAATTAAAGACCACTTTTCTATG

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004180 carboxypeptidase activity molecular_function
GO:0004185 serine-type carboxypeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function

KEGG:

id description
ko04142 Lysosome
ko04614 Renin-angiotensin system
ko01002 Peptidases and inhibitors
ko03110 Chaperones and folding catalysts
ko04131 Membrane trafficking
ko04147 Exosome

ZFIN:

id description
ZDB-GENE-030131-537 Predicted to enable serine-type carboxypeptidase activity. Predicted to act upstream of or within proteolysis. Human ortholog(s) of this gene implicated in galactosialidosis and lysosomal storage disease. Orthologous to human CTSA (cathepsin A).

Ensembl:

ensembl_id ENSDART00000158929

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065253 lncRNA downstream 118645 55274006 ~ 55278163 (-) True XLOC_033230
TCONS_00065252 lncRNA downstream 367895 55022836 ~ 55028913 (-) True XLOC_033228
TCONS_00065251 lncRNA downstream 510097 54881724 ~ 54886711 (-) True XLOC_033227
TCONS_00065250 lncRNA downstream 510159 54876177 ~ 54886649 (-) False XLOC_033227
TCONS_00064761 lncRNA downstream 553379 54841396 ~ 54843429 (-) True XLOC_033226
TCONS_00064545 lncRNA upstream 391537 55814757 ~ 55827517 (-) True XLOC_033239
TCONS_00064762 lncRNA upstream 585958 56009178 ~ 56038817 (-) True XLOC_033242
TCONS_00065254 lncRNA upstream 638501 56061721 ~ 56073926 (-) True XLOC_033243
TCONS_00065255 lncRNA upstream 907051 56330271 ~ 56567912 (-) False XLOC_033245
TCONS_00065256 lncRNA upstream 964234 56387454 ~ 56389460 (-) True XLOC_033246
TCONS_00064538 mRNA downstream 42804 55332460 ~ 55354004 (-) True XLOC_033233
TCONS_00064537 mRNA downstream 49192 55327909 ~ 55347616 (-) False XLOC_033233
TCONS_00064536 mRNA downstream 87618 55299511 ~ 55309190 (-) True XLOC_033232
TCONS_00064535 mRNA downstream 99534 55287823 ~ 55297274 (-) True XLOC_033231
TCONS_00064534 mRNA downstream 142022 55221490 ~ 55254786 (-) True XLOC_033229
TCONS_00064541 mRNA upstream 26080 55449300 ~ 55585423 (-) True XLOC_033235
TCONS_00064546 mRNA upstream 429054 55852274 ~ 55864687 (-) True XLOC_033240
TCONS_00064547 mRNA upstream 486575 55909795 ~ 55997350 (-) False XLOC_033241
TCONS_00064548 mRNA upstream 522941 55946161 ~ 55958705 (-) True XLOC_033241
TCONS_00064549 mRNA upstream 674751 56097971 ~ 56111829 (-) False XLOC_033244
TCONS_00064531 other downstream 581771 54814921 ~ 54815037 (-) True XLOC_033225
TCONS_00064525 other downstream 889630 54507105 ~ 54507178 (-) True XLOC_033220
TCONS_00064524 other downstream 890222 54506458 ~ 54506586 (-) True XLOC_033221
TCONS_00064499 other downstream 2116878 53273836 ~ 53279930 (-) False XLOC_033204
TCONS_00064492 other downstream 2363697 53032996 ~ 53033111 (-) True XLOC_033199
TCONS_00064542 other upstream 123915 55547135 ~ 55547270 (-) True XLOC_033236
TCONS_00064543 other upstream 132042 55555262 ~ 55555396 (-) True XLOC_033237
TCONS_00064544 other upstream 226899 55650119 ~ 55650251 (-) True XLOC_033238
TCONS_00064551 other upstream 1115789 56539009 ~ 56539125 (-) True XLOC_033247
TCONS_00064553 other upstream 1840290 57263510 ~ 57263645 (-) True XLOC_033251

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000340_17122774_17130168.mRNA True 2087 mRNA 0.44 14 CI01000340 17122396 ~ 17130168 (-)
mexican tetra (Astyanax mexicanus) TU153639 True 1804 lncRNA 0.44 12 NC_035909.1 25671469 ~ 25683917 (+)