XLOC_003326 (btf3l4)


Basic Information

Item Value
gene id XLOC_003326
gene name btf3l4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 13024002 ~ 13055807 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006510
ATAATATGAATACATAtcagtttggaaccacttgagggtacaGTACACTCTCCGAAAAAGGTAcatgGTCAATACAGTATGAATCAAGAGAAATTGGCTAAACTGCAAGCGCAGGTCCGGATAGGGGGCAAGGGCACTGCACGCAGGAAGAAGAAGGTCGTGCACAGAACGGCAACAGCCGATGACAAGAAACTCCAGAGTTCATTAAAAAAACTTGTGGTTAATAACATAGCTGGCATTGAAGAGGTGAATATGATTAAAGATGATGGCACAGTCATTCATTTCAATAACCCCAAAGTTCAGGCATCCTTGTCTGCAAATACGTTTGCCATCACTGGCCACGCAGAGACCAAACAGCTCACGGAAATGCTCCCGGGAATCCTCAGTCAGCTTGGTGCTGACAGTCTCACAAGTCTGCGCAAACTTGCAGAGCAGTTCCCTAGACAGGTTCTGGACAACAAAGCTCCGAAGGCAGAAGATATcgatgaagaagatgatgatgtcCCAGatCTTGTTGAGAACTTCGACGAAGCATCAAAGAACGAGGCCAACTGATCATCAGACCTCCAGTAACGGCTATTCAGGACGAAATCTCCTGCAGTATTTTTAAATTAGAGTGACCAGACATATCATTTCAACACTATTCAGTGAATCCAGAGACTTTTATATCACAAATTGGCTGTTCCAGATCAGATCCATTCCTGAGCTTTCGCCTGCATTTATACAGAAAGAGACGGACGGTTACATTGAATGCTTCACGGTTGTAATTCTTAATCACAGTGCTAGTTGAAATACTAGTTTTGACAACTGCGGCAATGAAGATTAgtcttaattttttgttttctgttaattaaataaaaataaaactcaaaccTTTT
>TCONS_00006512
GTATCACAGTTGTTCACCAAGTAAAGCAACAAAAACAACGTGACGTCTTTCTCCAGTAGTCTGACCACTTCCGCCTTGTTCATTCAACGCATGCTTCTCTGAGCAGCTGTGTTTATCAGcctacatcagaaaaaaatcactcataaagAAGTCAATACAGTATGAATCAAGAGAAATTGGCTAAACTGCAAGCGCAGGTCCGGATAGGGGGCAAGGGCACTGCACGCAGGAAGAAGAAGGTCGTGCACAGAACGGCAACAGCCGATGACAAGAAACTCCAGAGTTCATTAAAAAAACTTGTGGTTAATAACATAGCTGGCATTGAAGAGGTGAATATGATTAAAGATGATGGCACAGTCATTCATTTCAATAACCCCAAAGTTCAGGCATCCTTGTCTGCAAATACGTTTGCCATCACTGGCCACGCAG
>TCONS_00006513
ACCACTTCCGCCTTGTTCATTCAACGCATGCTTCTCTGAGCAGCTGTGTTTATCAGAAGTCAATACAGTATGAATCAAGAGAAATTGGCTAAACTGCAAGCGCAGGTCCGGATAGGGGGCAAGGGCACTGCACGCAGGAAGAAGAAGGTCGTGCACAGAACGGCAACAGCCGATGACAAGAAACTCCAGAGTTCATTAAAAAAACTTGTGGTTAATAACATAGCTGGCATTGAAGAGGTGAATATGATTAAAGATGATGGCACAGTCATTCATTTCAATAACCCCAAAGTTCAGGCATCCTTGTCTGCAAATACGTTTGCCATCACTGGCCACGCAGAGACCAAACAGCTCACGGAAATGCTCCCGGGAATCCTCAGTCAGCTTGGTGCTGACAGTCTCACAAGTCTGCGCAAACTTGCAGAGCAGTTCCCTAGACAGGTTCTGGACAACAAAGCTCCGAAGGCAGAAGATATcgatgaagaagatgatgatgtcCCAGatCTTGTTGAGAACTTCGACGAAGCATCAAAGAACGAGGCCAACTGATCATCAGACCTCCAGTAACGGCTATTCAGGACGAAATCTCCTGCAGTATTTTTAAATTAGAGTGACCAGACATATCATTTCAACACTATTCAGTGAATCCAGAGACTTTTATATCACAAATTGGCTGTTCCAGATCAGATCCATTCCTGAGCTTTCGCCTGCATTTATACAGAAAGAGACGGACGGTTACATTGAATGCTTCACGGTTGTAATTCTTAATCACAGTGCTAGTTGAAATACTAGTTTTGACAACTGCGGCAATGAAGATTAgtcttaattttttgttttctgttaattaaataaaaataaaactcaaaccTTTTATATA
>TCONS_00006514
ATTCAACGCATGCTTCTCTGAGCAGCTGTGTTTATCAGcctacatcagaaaaaaatcactcataaaggtttggaaccacttgaggatgagtataTTGAATACCGTTTTTGgTCAATACAGTATGAATCAAGAGAAATTGGCTAAACTGCAAGCGCAGGTCCGGATAGGGGGCAAGGGCACTGCACGCAGGAAGAAGAAGGTCGTGCACAGAACGGCAACAGCCGATGACAAGAAACTCCAGAGTTCATTAAAAAAACTTGTGGTTAATAACATAGCTGGCATTGAAGAGGTGAATATGATTAAAGATGATGGCACAGTCATTCATTTCAATAACCCCAAAGTTCAGGCATCCTTGTCTGCAAATACGTTTGCCATCACTGGCCACGCAGAGACCAAACAGCTCACGGAAATGCTCCCGGGAATCCTCAGTCAGCTTGGTGCTGACAGTCTCACAAGTCTGCGCAAACTTGCAGAGCAGTTCCCTAGACAGGTTCTGGACAACAAAGCTCCGAAGGCAGAAGATATcgatgaagaagatgatgatgtcCCAGatCTTGTTGAGAACTTCGACGAAGCATCAAAGAACGAGGCCAACTGATCATCAGACCTCCAGTAACGGCTATTCAGGACGAAATCTCCTGCAGTATTTTTAAATTAGAGTGACCAGACATATCATTTCAACACTATTCAGTGAATCCAGAGACTTTTATATCACAAATTGGCTGTTCCAGATCAGATCCATTCCTGAGCTTTCGCCTGCATTTATACAGAAAGAGACGGACGGTTACATTGAATGCTTCACGGTTGTAATTCTTAATCACAGTGCTAGTTGAAATACTAGTTTTGACAACTGCGGCAATGAAGATTAgtcttaattttttgttttctgttaattaaataaaaataaaactcaaaccTTTTATA

Function

symbol description
btf3l4 Orthologous to human BTF3L4 (basic transcription factor 3 like 4).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1650 Orthologous to human BTF3L4 (basic transcription factor 3 like 4).

Ensembl:

ensembl_id ENSDARG00000089681

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006510 False 878 mRNA 0.42 6 13024002 13055802
TCONS_00006512 False 429 mRNA 0.44 5 13041341 13047246
TCONS_00006513 False 874 mRNA 0.42 6 13041404 13055807
TCONS_00006514 True 924 mRNA 0.42 7 13041422 13055805

Neighbor

gene id symbol gene type direction distance location
XLOC_003325 si:dkey-11m19.5 coding upstream 68264 12879635 ~ 12955738 (+)
XLOC_003324 zgpat coding upstream 148814 12860260 ~ 12875188 (+)
XLOC_003323 rtel1 coding upstream 164739 12811906 ~ 12859263 (+)
XLOC_003322 NA coding upstream 238943 12782215 ~ 12785059 (+)
XLOC_003321 rbb4l coding upstream 253456 12744575 ~ 12770546 (+)
XLOC_003328 zfyve9b coding downstream 2806 13058613 ~ 13088179 (+)
XLOC_003329 CR847923.1 coding downstream 96112 13151919 ~ 13152385 (+)
XLOC_003330 mob3c coding downstream 104181 13159988 ~ 13174477 (+)
XLOC_003331 mknk1 coding downstream 120761 13176568 ~ 13189751 (+)
XLOC_003332 NA coding downstream 137916 13193723 ~ 13194597 (+)
XLOC_003318 CR450764.6 misc upstream 312006 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 329739 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 338403 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 343974 12679732 ~ 12680028 (+)
XLOC_003314 CR450764.9 misc upstream 400151 12623555 ~ 12623851 (+)
XLOC_003369 CR854846.2 misc downstream 3066979 16122786 ~ 16123082 (+)
XLOC_003319 NA non-coding upstream 305600 12718109 ~ 12718402 (+)
XLOC_003307 NA non-coding upstream 500973 12522770 ~ 12523029 (+)
XLOC_003304 NA non-coding upstream 529825 12493872 ~ 12494177 (+)
XLOC_003302 NA non-coding upstream 556942 12466766 ~ 12467060 (+)
XLOC_003341 CR555295.2 non-coding downstream 761762 13817569 ~ 13817684 (+)
XLOC_003342 AL928649.1 non-coding downstream 809039 13864846 ~ 13864964 (+)
XLOC_003344 CT956066.1 non-coding downstream 1025733 14081540 ~ 14082177 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000051_07259968_07261598 BT3L4, BTF3L4 coding CI01000051 null 7259718 ~ 7261731 (+)