rhoa (rhoa)


Basic Information

Item Value
gene id rhoa
gene name rhoa
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 50233647 ~ 50239667 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036947899.1
TGTTTCAGTGCACCCCCTCAAATAAGGTTGGGACAGAGCTAGCAAGTCAAGCCTGAGGCCGAGACATTATCCAGAAAACAACAATCTAGCTACATATTGTCATGGCAGCCATCCGAAAGAAGCTGGTCATAGTGGGAGATGGCGCATGTGGGAAGACGTGTCTGCTCATCGTCTTCAGTAAAGACCAGTTCCCCGAGGTCTACGTGCCCACTGTCTTCGAGAACTATGTCGCTGACATTGAGGTCGACAGCAAACAGGTTGAGTTGGCACTATGGGATACAGCCGGCCAGGAGGACTATGATAGGCTCCGCCCCCTATCTTACCCAGATACAGATGTCATCCTCATGTGCTTCTCCATCGATAGCCCTGACAGTTTGGAAAACATCCCAGAGAAATGGACTCCAGAGGTCAAACACTTCTGCCCTAACGTTCCCATCATCCTAGTGGGCAACAAAAAGGACCTGCGTAACGACGAGCACACCCGCAGAGAGCTAGCCAAGATGAAGCAGGAGCCTGTGAAGCCAGAGGAGGGACGTGACATGGCGAACCGGATCAGTGCCTTCGGCTACATGGAGTGCTCTGCAAAGACCAAGGATGGCGTGAGGGAAGTGTTTGAGATGGCCACCAGAGCGGCGCTACAGGCCCGGCGGGGGAAGCCGAGAAATAAATGCCTCCTACTGTAAAGGGAGGCATGAGGGACTCTGCCTCCTGCTGGGGGCAAGGCAGAATAAATTAGATCTATTCCCCCTCTGCCCCACAAGACTGTGCTCCCCATTTTCTACTAAAGGTGTAATGCTTTTAATTTGTCTTAAAGTGAGTCATGTTTTTGTCAGTATTCAATGATGGGGTTAtggaaaagctttttttttttgtacatgaGTGAATCTGCCATATCAACACTTCCTTTGAACTTGTACTGCCATGCAACCTATTGTCATACCTGCCAATTAAGTGCTTGAGCCCCGCCCACTGAACTGAGGAATGTCTCCATAGCCAATCAGGGTGGGGTACCCATACACTGATCCAAAGGCTTGATAATTTTGTTATGCACATACAGGCATAACATTTGAAATAAATGTGCTTCATATATTCATATGCGCACACAGAAATGTGTCTGTGTAATAAATACCTTGACAGTGGAAATAAATTACAAATGTATGTTTGTAAGAAGCTAAATTGA
>NM_001165060.1
AAATAAGGTTGGGACAGAGCTAGCAAGTCAAGCCTGAGGCCGAGACATTATCCAGAAAACAACAATCTAGCTACATATTGGTCAGTCATGGCAGCCATCCGAAAGAAGCTGGTCATAGTGGGAGATGGCGCATGTGGGAAGACGTGTCTGCTCATCGTCTTCAGTAAAGACCAGTTCCCCGAGGTCTACGTGCCCACTGTCTTCGAGAACTATGTCGCTGACATTGAGGTCGACAGCAAACAGGTTGAGTTGGCACTATGGGATACAGCCGGCCAGGAGGACTATGATAGGCTCCGCCCCCTATCTTACCCAGATACAGATGTCATCCTCATGTGCTTCTCCATCGATAGCCCTGACAGTTTGGAAAACATCCCAGAGAAATGGACTCCAGAGGTCAAACACTTCTGCCCTAACGTTCCCATCATCCTAGTGGGCAACAAAAAGGACCTGCGTAACGACGAGCACACCCGCAGAGAGCTAGCCAAGATGAAGCAGGAGCCTGTGAAGCCAGAGGAGGGACGTGACATGGCGAACCGGATCAGTGCCTTCGGCTACATGGAGTGCTCTGCAAAGACCAAGGATGGCGTGAGGGAAGTGTTTGAGATGGCCACCAGAGCGGCGCTACAGGCCCGGCGGGGGAAGCCGAGAAATAAATGCCTCCTACTGTAAAGGGAGGCATGAGGGACTCTGCCTCCTGCTGGGGGCAAGGCAGAATAAATTAGATCTATTCCCCCTCTGCCCCACAAGACTGTGCTCCCCATTTTCTACTAAAGGTGTAATGCTTTTAATTTGTCTTAAAGTGAGTCATGTTTTTGTCAGTATTCAATGATGGGGTTAtggaaaagctttttttttttgtacatgaGTGAATCTGCCATATCAACACTTCCTTTGAACTTGTACTGCCATGCAACCTATTGTCATACCTGCCAATTAAGTGCTTGAGCCCCGCCCACTGAACTGAGGAATGTCTCCATAGCCAATCAGGGTGGGGTACCCATACACTGATCCAAAGGCTTGATAATTTTGTTATGCACATACAGGCATAACATTTGAAATAAATGTGCTTCATATATTCATATGCGCACACAG

Function

symbol description
rhoa Enables GTP binding activity; GTPase activity; and myosin binding activity. Involved in several processes, including cell surface receptor signaling pathway; cytoskeleton organization; and positive regulation of intracellular signal transduction. Acts upstream of or within several processes, including endothelial tube lumen extension; negative regulation of cell migration involved in sprouting angiogenesis; and positive regulation of stress fiber assembly. Located in several cellular components, including apical junction complex; dendritic spine; and endosome. Is extrinsic component of cytoplasmic side of plasma membrane. Is active in glutamatergic synapse and postsynapse. Colocalizes with cleavage furrow. Implicated in breast carcinoma. Biomarker of breast cancer; colorectal cancer; multiple sclerosis; ovarian carcinoma; and urinary bladder cancer.

NR:

description
Transforming protein RhoA

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K04513 RHOA; Ras homolog gene family, member A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036947899.1 False 1180 mRNA 0.48 5 50233647 50239667
NM_001165060.1 True 1092 mRNA 0.49 5 50233666 50239593

Neighbor

gene id symbol gene type direction distance location
LOC110494984 LOC106565139 coding upstream 3972 50222641 ~ 50229675 (+)
LOC110494976 LOC106565138 coding upstream 26327 50197103 ~ 50207320 (+)
LOC110494957 qrich1 coding upstream 40948 50181045 ~ 50192699 (+)
LOC110494954 LOC106565153 coding upstream 575680 49604663 ~ 49657967 (+)
cacna1da LOC106583449 coding upstream 639147 49478916 ~ 49594500 (+)
zgc:112334 LOC106565137 coding downstream 13140 50252807 ~ 50259008 (+)
LOC110494960 nckipsd coding downstream 23680 50263347 ~ 50280709 (+)
slc25a20 slc25a20 coding downstream 43430 50283097 ~ 50289549 (+)
prkar2ab LOC106565134 coding downstream 50611 50290278 ~ 50301818 (+)
LOC110494986 LOC106565131 coding downstream 142405 50382072 ~ 50386942 (+)
G1459494 NA non-coding upstream 19236 50214036 ~ 50214411 (+)
G1459493 NA non-coding upstream 19694 50213753 ~ 50213953 (+)
G1459492 NA non-coding upstream 20185 50213231 ~ 50213462 (+)
G1459490 NA non-coding upstream 22657 50210735 ~ 50210990 (+)
G1459480 NA non-coding upstream 56692 50176692 ~ 50176955 (+)
G1459518 NA non-coding downstream 57796 50297463 ~ 50358790 (+)
G1459510 LOC106565133 non-coding downstream 64464 50304131 ~ 50310362 (+)
G1459562 NA non-coding downstream 129382 50369049 ~ 50369289 (+)
G1459568 NA non-coding downstream 141107 50380774 ~ 50381005 (+)
G1459570 NA non-coding downstream 151600 50391267 ~ 50391700 (+)
G1458807 NA other upstream 794318 49439006 ~ 49439329 (+)
erc2 LOC106583361 other upstream 1193291 48866589 ~ 49040356 (+)
bsnb LOC106565168 other upstream 1512403 48693321 ~ 48814670 (+)
LOC110494013 LOC106565177 other upstream 1809242 48389082 ~ 48424478 (+)
atxn7l2a LOC106565127 other downstream 191140 50427145 ~ 50437612 (+)
G1459769 NA other downstream 536862 50776529 ~ 50777072 (+)
LOC110494047 btg2 other downstream 655273 50894903 ~ 50897444 (+)
G1460249 LOC106565103 other downstream 840465 51080132 ~ 51137770 (+)
G1464092 LOC106565344 other downstream 3934347 54147039 ~ 54189617 (+)

Expression


Co-expression Network