LOC110494308 (LOC106565540)


Basic Information

Item Value
gene id LOC110494308
gene name LOC106565540
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 62282838 ~ 62286838 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569263.2
CCAACTTCTCCTGCACACTGCAATCAAACTGAATATCAGTTAAGTTGTCTTTGTTTAAGTTATAAGTCTAAATTGCTTTAACCTATGGCCCTATGTTTTTTTTGATGGGTTGAAATCATTGGGCTAATAGTTATTTGGAGATTTAGGTTATCTAAAATTCTCGGACATGATGTCAGTATTTAAGCATTGatgcattgtaattttgaaagTTAAATTAGCCTAAAACGCATCTTACTAACTCAGTAGTTTTAGATCAGATATGGTAGGTATATCAAACATTAGTGTAATAGCATATCAAAGTATCTCTGTTACTCAGTGTATCAATTTTTGTCTTGTTTCTCTGCAGAAGACCGCTCGTGCGTAAAGTTGCTGGCACCCGCCTCTTCGCTCTCCAAACCTGAACCATGTACCCGTTTAATGCCAGTTTCAGTAACTTCAGTCTGATGATGGAGGTTGCGGACATGCCTCGGGATGAGAACCTGGCCAAAGTAGAGATCGCGCTGCTCAGCGTCATCTTCGTCAGTGCCGCTATCCTGAACACTGGGCTACTACTGGTTCTGTGGAAGCGGCGCAAACAGGTATCCAAGATGCGTGTCTTGGTGTTCCACCTTTGCGTTGCGGACCTGGTTGTGGCGTTTTTCCAGGTGTGCCCGCAGCTCATGTGGGACATTACGGACAGATTCATCGGACCGGACCTGGTGTGCCGCTTGGTGAAGTATCTGCAGGTCGTAGGCATGTTTGCGTCCACCTACATGATCGTAGTGATGACCATTGACCGCTACCAGGCTATCTGCAACCCTATGGTCAAATTTCAGAGGAGGCGCAAGCGCTGGAACATCCCTGTTTGCATCGCCTGGGCGATATCCCTCGTGGGCGGCCTGCCTCAGATCTTCATCTTCTCCCGGGTCCAGGTGGCTCCCGGGGTGTTCGACTGCTGGGCGGACTTTATCCAGCCCTGGGGCTTGAAGACCTACATCACCTGGACCACGATGGTTatctttgtcttgcccattttgACCGTGGTGGTGTGTCAGGTGCGAATCTGCCGAGCCATCCAGAATAACCTTTACTTAAAGACGCACCAGGATGGGGGTAGCGGGGTTGCCTTTCAGCTGCCCTCCAGAACCAGCAGCGTGGCTGGTGTGTCCAAAGCACGAATCAAAACTGTGAAGATGACAGTGATTATCGTACTTGCCTACATCATCTGCTGGACTCCGTTCTTCACGGTCCAGCTTTGGTCTGTGTGGGACAAGGACGCGCCAACAGAAACCGCAACGTTCACCATCCTGATGCTGTTGGCAAGTCTGAACAGCTGCGCCAACCCCTGCATCTACCTGCTCTTCAACGGCCAGCTGCCCAATAAGCTGACGGTGCTGTGCCGAAGGCCTTCCAACAGGAAAGACTCCATTAACTATGAGGCCACAGTGGTCAGCTCGCTCTACATGAGCTTCAAAAGCATCTCCGACTCCAAATAGAACACACGGTTTTCATATTCTCCAGgt
>TU1684530
CTCATGTCGACCCCTCCCCAACTTCTCCTGCACACTGCAATCAAACTGAATATCAAAGACCGCTCGTGCGTAAAGTTGCTGGCACCCGCCTCTTCGCTCTCCAAACCTGAACCATGTACCCGTTTAATGCCAGTTTCAGTAACTTCAGTCTGATGATGGAGGTTGCGGACATGCCTCGGGATGAGAACCTGGCCAAAGTAGAGATCGCGCTGCTCAGCGTCATCTTCGTCAGTGCCGCTATCCTGAACACTGGGC

Function

NR:

description
oxytocin receptor-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005000 vasopressin receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569263.2 False 1502 mRNA 0.49 2 62282855 62286838
TU1684530 True 255 lncRNA 0.53 2 62282838 62283400

Neighbor

gene id symbol gene type direction distance location
ghrl ghrl coding upstream 28045 62210022 ~ 62254810 (+)
LOC110494300 ruvb1 coding upstream 210931 62062599 ~ 62071924 (+)
LOC110494299 LOC106565550 coding upstream 349008 61921680 ~ 61933847 (+)
si:ch211-157b11.8 LOC106565551 coding upstream 388662 61887592 ~ 61894193 (+)
LOC110494292 LOC106565557 coding upstream 431830 61816490 ~ 61851025 (+)
LOC110494317 LOC106565535 coding downstream 118575 62405413 ~ 62417692 (+)
LOC110493234 NA coding downstream 139706 62426544 ~ 62433065 (+)
LOC110494314 LOC106565532 coding downstream 185093 62471931 ~ 62491150 (+)
LOC110494318 rheb coding downstream 205133 62491971 ~ 62496531 (+)
LOC100136666 LOC100136666 coding downstream 220018 62506856 ~ 62528639 (+)
G1472883 NA non-coding upstream 67283 62214323 ~ 62215572 (+)
G1472762 NA non-coding upstream 170127 62028290 ~ 62112728 (+)
G1472820 NA non-coding upstream 175419 62106012 ~ 62107436 (+)
G1472701 NA non-coding upstream 342378 61878581 ~ 61940477 (+)
G1472625 LOC106565554 non-coding upstream 384347 61867645 ~ 61898508 (+)
G1472961 LOC106565537 non-coding downstream 70084 62356922 ~ 62359002 (+)
G1472966 LOC106565537 non-coding downstream 81005 62367843 ~ 62370614 (+)
G1473067 NA non-coding downstream 264962 62551800 ~ 62552243 (+)
G1473082 NA non-coding downstream 278911 62565749 ~ 62566066 (+)
G1473083 NA non-coding downstream 279256 62566094 ~ 62566299 (+)
LOC110494283 LOC106565563 other upstream 725817 61555873 ~ 61558328 (+)
G1471723 LOC100380707 other upstream 1283792 60972478 ~ 60999063 (+)
G1470607 NA other upstream 2178848 60101892 ~ 60104007 (+)
G1469076 NA other upstream 3774970 58507297 ~ 58507885 (+)
G1467219 NA other upstream 4668555 57589865 ~ 57614300 (+)
G1473171 LOC106581772 other downstream 411665 62698503 ~ 62698815 (+)
G1473177 NA other downstream 423501 62710339 ~ 62711136 (+)
G1474159 NA other downstream 930110 63216948 ~ 63217594 (+)
srsf3b LOC106565658 other downstream 1371606 63658373 ~ 63663255 (+)
tmcc2 LOC106565656 other downstream 1397252 63684043 ~ 63691033 (+)

Expression


Co-expression Network