XLOC_033476


Basic Information

Item Value
gene id XLOC_033476
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 10053343 ~ 10054205 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00068780
aggaggcagggaggggttttgcgctcatgcacatgcgctcagtttcacgttaattcggatgtacaaagacaatatgcgtgggattcagcgtacgcagtgtttcatacatctgaattttttactgcatatGCACATTTACCgatttgtgcgtacgcaatgttttagtatgaattcaacacaagtgttcgtacatgaggcccctggacaaTAAGAAGAAAGATATGACACTCTACAAAGTGCTAACAGAAGCCTGACATTACcagcacattatttcagaaaacgTCTGGACAACTAGAACAAAACAGGGCAGCCACATTAAACAtagactTTTGCTTGAAGAGGAACTGATGTTGTTTTTTGTacgtatttactttttttttttttaaataaagagactGAATGATTATAAATTGTGCAAAAGGCCAACAAATCTGGTATTGTGCTTAGGACGTTTGCAGAGTATTTCATATAAG

Function

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0098660 inorganic ion transmembrane transport biological_process
GO:0098661 inorganic anion transmembrane transport biological_process
GO:0055085 transmembrane transport biological_process
GO:1902476 chloride transmembrane transport biological_process
GO:0006821 chloride transport biological_process
GO:0022803 passive transmembrane transporter activity molecular_function
GO:0022836 gated channel activity molecular_function
GO:0022839 ion gated channel activity molecular_function
GO:0015267 channel activity molecular_function
GO:0005216 ion channel activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00068780 True 473 lncRNA 0.38 2 10053343 10054205

Neighbor

gene id symbol gene type direction distance location
XLOC_033474 cers3a coding upstream 91616 9904627 ~ 9961727 (+)
XLOC_033473 lins1 coding upstream 157438 9873750 ~ 9895905 (+)
XLOC_033472 NA coding upstream 496698 9556044 ~ 9556645 (+)
XLOC_033471 chsy1 coding upstream 542045 9326234 ~ 9511298 (+)
XLOC_033470 selenos coding upstream 730850 9308625 ~ 9322493 (+)
XLOC_033477 CU184872.1 coding downstream 193867 10248072 ~ 10248187 (+)
XLOC_033478 MINAR1 coding downstream 296833 10351038 ~ 10372503 (+)
XLOC_033479 zfand6 coding downstream 507913 10562118 ~ 10583151 (+)
XLOC_033480 fah coding downstream 537947 10592152 ~ 10632375 (+)
XLOC_033481 NA coding downstream 613266 10667471 ~ 10681656 (+)
XLOC_033467 NA non-coding upstream 989962 9061425 ~ 9063381 (+)
XLOC_033465 NA non-coding upstream 1212728 8835309 ~ 8840615 (+)
XLOC_033463 NA non-coding upstream 1426659 8623945 ~ 8626684 (+)
XLOC_033460 CR382283.1 non-coding upstream 1623424 8428954 ~ 8429919 (+)
XLOC_033482 LO018300.1 non-coding downstream 629282 10683487 ~ 10683607 (+)
XLOC_033485 NA non-coding downstream 980344 11034549 ~ 11035613 (+)
XLOC_033487 CR847996.1 non-coding downstream 1159203 11213408 ~ 11213524 (+)

Expression


Co-expression Network