G1423809


Basic Information

Item Value
gene id G1423809
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 15919252 ~ 15935970 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1629946
AGTTTAGTATTTATTTTTACTGACGTCGTGGCTCTTACATAAGTTGACTGTTATGTTATGTGGAGTCAGTGTCTGTATTATGTTACTTTGATGATTATTGTTGAGTCATTCTGTGTGTAAATACTAGTACATTACCAGGAGTGGTTGGCTGGCCGACGGCCATGAGAAACTACACTCGAGAGCCCCACTCCATTTTAAGCGTCTTTAAAATCTCAACCACTAGGACAACTCCTTACTCTAgcctctctcctttctcatcgTCGCTCTCCAGGATCGTTATGGTCCtcctagggttgcaaaattccagtaactttccccaaatttcCTGgtcagaaatcctggttggaggatacCCAGATTTCCTACACATTCCCTTCTAATTCCAAGAATATCCCTACTGGGATTTCTGGaaacctgggaatttggggaaattTCCTAGAATTTTTCAACCCTAGGTCCTCCTGGTTACCATGGTGATCATGATCACAATATCAGCCAGTGTTTGTCGTCGACCACAATACAACTAGTCCTGCTGCAGGGACAGGGTTGGAGGACTCAATTCCAATTCAACAATTAACTCCCATCAATTCAGGAATTGAATGGAAATGTCCCTATAAAATGAACTGAAAAATCATAATTATGAATTGAAACATTTCCATTCCTAAATAAACTTGAGTTGAACTTGAATTGACTCCAAACGCTGCACGTGCTTGCTATCAGCCTCTGCCCCTTCTTGTGTAAACGATGTGTGATGCTTTCTGTAGGAAGGCACACCAGCTCCAGCCAGCCACAACAACCTTCCctgccctccctccacccccacccagAGAGAAGCCATcttagcctgagtgccagtcttgTTAGTGCCAccatgccaactccttgtcattCGCTGTCATACTAaacatgtttggcttgacaatcaCACCAATGTAGTTGTCAAGATGGCACAaacacatctgggaccaggctagggccTCCTATCTCTGAGACAGCTTGTTCCTCAGCTCAGCCAAAAAGTCAAGAAAGATACATCAATATACAGCTACTTTTGAGAAAGACCAAATGATGTTGTGTTTTCCTTTAAGCCTTGTTGATCGTTGTGGTGGCGGTTTACAGAGGGATCAAAAGTGATAGATCAAGACCACGTCCCCAATGGCAACCTATTGCCTATACTCTATAGCGCACTCCTTTTAATcagggcccattgggctctgatcaaaagtagtgcactatgtagggaatagggggtaaTTTAGGACGCTCCCCGAAGTAGACATGATTCAGCCCAGGGCTGACATGAATAGATCAGTTTACATGAGAGTCCGCTGTTCTATGTATTCCAGCTATGTAGATATGTGGATATGTGGAAGCCTCGGTCCATTATTACGAACACTAGACCTAGGTTGCAACGGGCACAACAGCTCGTTCATTGTGGTCACCATGGAAACATTGAGCGTAtagatgtgtgtgtttttgacacTGGAAAAAGACTTGTCTGACTCAGGCCTTGTGTAAGTGTGATCTAATGTGTAGGTGTATACAGTGACATTGTCCATGTGAATCCCTTAGTAAAAACCCTATTTCAATGTCTGGTAaaaaaaaaaaaaaaacgtaccttatttcaataagtattcagaccctttgctatcatactcgaaattgagctcagctgcat
>TU1629949
AGTTTAGTATTTATTTTTACTGACGTCGTGGCTCTTACATAAGTTGACTGTTATGTTATGTGGAGTCAGTGTCTGTATTATGTTACTTTGATGATTATTGTTGAGTCATTCTGTGTGTAAATACTAGTACATTACCAGGAGTGGTTGGCTGGCCGACGGCCATGAGAAACTACACTCGAGAGCCCCACTCCATTTTAAGCGTCTTTAAAATCTCAACCACTAGGACAACTCCTTACTCTAgcctctctcctttctcatcgTCGCTCTCCAGGATCGTTATGGTCCtcctagggttgcaaaattccagtaactttccccaaatttcCTGgtcagaaatcctggttggaggatacCCAGATTTCCTACACATTCCCTTCTAATTCCAAGAATATCCCTACTGGGATTTCTGGaaacctgggaatttggggaaattTCCTAGAATTTTTCAACCCTAGGTCCTCCTGGTTACCATGGTGATCATGATCACAATATCAGCCAGTGTTTGTCGTCGACCACAATACAACTAGTCCTGCTGCAGGGACAGGGTTGGAGGACTCAATTCCAATTCAACAATTAACTCCCATCAATTCAGGAATTGAATGGAAATGTCCCTATAAAATGAACTGAAAAATCATAATTATGAATTGAAACATTTCCATTCCTAAATAAACTTGAGTTGAACTTGAATTGACTCCAAACGCTGCACGTGCTTGCTATCAGCCTCTGCCCCTTCTTGTGTAAACGATGTGTGATGCTTTCTGTAGGAAGGCACACCAGCTCCAGCCAGCCACAACAACCTTCCctgccctccctccacccccacccagAGAGAAGCCATcttagcctgagtgccagtcttgTTAGTGCCAccatgccaactccttgtcattCGCTGTCATACTAaacatgtttggcttgacaatcaCACCAATGTAGTTGTCAAGATGGCACAaacacatctgggaccaggctagggccTCCTATCTCTGAGACAGCTTGTTCCTCAGCTCAGCCAAAAAGTCAAGAAAGATACATCAATATACAGCTACTTTTGAGAAAGACCAAATGATGTTGTGTTTTCCTTTAAGCCTTGTTGATCGTTGTGGTGGCGGTTTACAGAGGGATCAAAAGTGATAGATCAAGACCACGTCCCCAATGGCAACCTATTGCCTATACTCTATAGCGCACTCCTTTTAATcagggcccattgggctctgatcaaaagtagtgcactatgtagggaatagggggtaaTTTAGGACGCTCCCCGAAGTAGACATGATTCAGCCCAGGGCTGACATGAATAGATCAGTTTACATGAGAGTCCGCTGTTCTATGTATTCCAGCTATGTAGATATGTGGATATGTGGAAGCCTCGGTCCATTATTACGAACACTAGACCTAGGTTGCAACGGGCACAACAGCTCGTTCATTGTGGTCACCATGGAAACATTGAGCGTAtagatgtgtgtgtttttgacacTGGAAAAAGACTTGTCTGACTCAGGCCTTGTGTAAGTGTGATCTAATGTGTAGGTGTATACAGTGACATTGTCCATGTGAATCCCTTAGTAAAAACCCTATTTCAATGTCTGGTAaaaaaaaaaaaaaaaacgtaccttatttcaataagtattcagaccctttgctatcatactcgaaattgagctcagctgcat
>TU1629947
AGTTTAGTATTTATTTTTACTGACGTCGTGGCTCTTACATAAGTTGACTGTTATGTTATGTGGAGTCAGTGTCTGTATTATGTTACTTTGATGATTATTGTTGAGTCATTCTGTGTGTAAATACTAGTACATTACCAGGAGTGGTTGGCTGGCCGACGGCCATGAGAAACTACACTCGAGAGCCCCACTCCATTTTAAGCGTCTTTAAAATCTCAACCACTAGGACAACTCCTTACTCTCCAGGATCGTTATGGTCCtcctagggttgcaaaattccagtaactttccccaaatttcCTGgtcagaaatcctggttggaggatacCCAGATTTCCTACACATTCCCTTCTAATTCCAAGAATATCCCTACTGGGATTTCTGGaaacctgggaatttggggaaattTCCTAGAATTTTTCAACCCTAGGTCCTCCTGGTTACCATGGTGATCATGATCACAATATCAGCCAGTGTTTGTCGTCGACCACAATACAACTAGTCCTGCTGCAGGGACAGGGTTGGAGGACTCAATTCCAATTCAACAATTAACTCCCATCAATTCAGGAATTGAATGGAAATGTCCCTATAAAATGAACTGAAAAATCATAATTATGAATTGAAACATTTCCATTCCTAAATAAACTTGAGTTGAACTTGAATTGACTCCAAACGCTGCACGTGCTTGCTATCAGCCTCTGCCCCTTCTTGTGTAAACGATGTGTGATGCTTTCTGTAGGAAGGCACACCAGCTCCAGCCAGCCACAACAACCTTCCctgccctccctccacccccacccagAGAGAAGCCATcttagcctgagtgccagtcttgTTAGTGCCAccatgccaactccttgtcattCGCTGTCATACTAaacatgtttggcttgacaatcaCACCAATGTAGTTGTCAAGATGGCACAaacacatctgggaccaggctagggccTCCTATCTCTGAGACAGCTTGTTCCTCAGCTCAGCCAAAAAGTCAAGAAAGATACATCAATATACAGCTACTTTTGAGAAAGACCAAATGATGTTGTGTTTTCCTTTAAGCCTTGTTGATCGTTGTGGTGGCGGTTTACAGAGGGATCAAAAGTGATAGATCAAGACCACGTCCCCAATGGCAACCTATTGCCTATACTCTATAGCGCACTCCTTTTAATcagggcccattgggctctgatcaaaagtagtgcactatgtagggaatagggggtaaTTTAGGACGCTCCCCGAAGTAGACATGATTCAGCCCAGGGCTGACATGAATAGATCAGTTTACATGAGAGTCCGCTGTTCTATGTATTCCAGCTATGTAGATATGTGGATATGTGGAAGCCTCGGTCCATTATTACGAACACTAGACCTAGGTTGCAACGGGCACAACAGCTCGTTCATTGTGGTCACCATGGAAACATTGAGCGTAtagatgtgtgtgtttttgacacTGGAAAAAGACTTGTCTGACTCAGGCCTTGTGTAAGTGTGATCTAATGTGTAGGTGTATACAGTGACATTGTCCATGTGAATCCCTTAGTAAAAACCCTATTTCAATGTCTGGTACACTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1629946 False 1678 lncRNA 0.43 2 15919252 15935970
TU1629949 False 1679 lncRNA 0.43 2 15919252 15935970
TU1629947 True 1575 lncRNA 0.44 2 15934368 15935970

Neighbor

gene id symbol gene type direction distance location
LOC110518551 LOC106591223 coding downstream 1729 15898886 ~ 15917523 (-)
LOC110487244 LOC105012087 coding downstream 47521 15850674 ~ 15871731 (-)
LOC110485609 LOC106591329 coding downstream 121373 15777687 ~ 15797879 (-)
LOC110487262 hoga1 coding downstream 159058 15744215 ~ 15760194 (-)
LOC110485613 LOC106591333 coding downstream 214987 15627128 ~ 15704265 (-)
LOC110485584 va0e2 coding upstream 742 15936074 ~ 15938556 (-)
LOC118940334 p40phox coding upstream 345427 16281397 ~ 16330030 (-)
LOC110515368 LOC105012189 coding upstream 423376 16359346 ~ 16373440 (-)
LOC110512844 pla2g6 coding upstream 437755 16373725 ~ 16400027 (-)
LOC110512923 LOC106590932 coding upstream 535947 16471917 ~ 16544688 (-)
G1423867 NA non-coding downstream 8122 15910534 ~ 15911130 (-)
G1423812 NA non-coding downstream 26967 15891068 ~ 15892285 (-)
G1423864 NA non-coding downstream 32048 15885690 ~ 15887204 (-)
G1423856 NA non-coding downstream 45203 15872226 ~ 15874049 (-)
G1423876 NA non-coding upstream 12270 15948240 ~ 15948832 (-)
G1423877 NA non-coding upstream 17148 15953118 ~ 15953390 (-)
G1423879 NA non-coding upstream 20017 15955987 ~ 15956456 (-)
G1423880 NA non-coding upstream 21487 15957457 ~ 15957678 (-)
G1423836 NA other downstream 88242 15808686 ~ 15831010 (-)
G1423112 NA other downstream 335159 15583695 ~ 15584093 (-)
G1422920 LOC106591235 other downstream 505655 15397290 ~ 15413597 (-)
G1422918 NA other downstream 514078 15383119 ~ 15405174 (-)
G1422897 NA other downstream 584361 15333878 ~ 15334891 (-)
G1423891 NA other upstream 49303 15985273 ~ 15986842 (-)
G1424040 NA other upstream 433787 16369757 ~ 16370443 (-)
G1424051 cbx6 other upstream 470761 16406731 ~ 16410128 (-)
G1424038 LOC106591467 other upstream 476088 16412058 ~ 16418005 (-)
LOC110508387 LOC106599573 other upstream 719298 16564951 ~ 16674565 (-)

Expression


Co-expression Network