LOC110487262 (hoga1)


Basic Information

Item Value
gene id LOC110487262
gene name hoga1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 15744215 ~ 15760194 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036949091.1
TACCTTGTCAACCCACCCGCTTCTGCAGCCAAAATACAGCCGTTCCATTTGACACAATGTTCGGTGTCAAAACTCTCCGAACTGTCGGTCCAGCAGTGTGTAGACGTGGTGCCTCTGTGCTGTGGAAGCCAACTAGGACCCAGAGCCGAACCCAAAGCGCGGCGGCTGGACAGAGAGTGGACATCGGGGGGATCTACCCGCCAATAGCCACGCCGTTTACTCAGAAAGAGGACGTGGACTATCAGAAACTGGATGAAAACCTGCAGAAGTATGCAAAGATTCCTTTCAAAGGTCTGGTGGTGCAGGGCTCTAATGGAGAGTACCCGTACCTggcggaggaggagagggtagaggtggTGAGGAGGGTCAGACTGGCACTGCCCACAGACAAGCTGGTCATGGCAGGATCCGGATGTGAATCCACCAAAGCTACAGTAGTGATGACAGAGAGGATGGCGGGGGCGGGGGCAGACCTGGTTCTCGTGGTAACGCCATGCTTCTACAAGGGCATGATGGACAGCAGGGCGCTGGTTCACCACTTCACACAGgTGGCAGACAGTAGTCCAGTACCAGTAGTTCTGTACAGTGTCCCGGCTAACACAGGTCTTGACCTCCCTGTTGATGCTGTGGTGAGACTGGCCCAACACCCTAACATACTGGGACTCAAGGACAGCGGAGGAGACATCACCAGGATCGCTCTGATCGTTCACAAAACGAAGCCGCAGGATTTTCAGGTTCTGGCGGGTTCCGCTGGGTTCCTTATGGCGGCGTATTCCGTGGgttgtGTGGGCGGTGTGTGTGCGCTTGCCAACGTGCTGGGGCGTGAGGTGTGTGAGCTGGAGCAGCTGTGTGTGTCGGGGCGgtgggaagaagccactgctctgcAGCAGCGCCTCATAGAGCCCAACACTGCTGTGACCAGGAAGTTTGGCGTTCCCGCTCTCAAGCAGGCGATGGAGTGGTTTGGTTACCACGGTGGCACCTGTCGCTCTCCTCTTCAACCGCTCTCAGAGGCTGAATCACAGCAGCTTAGACTGGACTTCTCCACCAACGGCTGGCTCTGAAGGGGACAGGGGGCGGGACTGAGTAGAAGACAGGGGACTGGGCTTGCTCCAGGTTGAAGTTGCCATCATAGAATAGAATGCGTAGAACATTAtggcatcattgacttgaatgtggATTTCCTTTCTACTCATTCTAATTATATGGTTGTctctaaccacagatctaggatcaggtgacTCTACACccagtcctaaccttaaccattagggagTTGATAAAAGATGTGACCCTGTATCAGTTGTTAGGGGCAACATCAACCTACTGTGACTGTTTCATACATGCATAGCTTCCTTCCCTTCCTGGCCTTAAATCTAAGAGGACTTGATAGTTGGAAGCAATAACCAATCCAGTCCTTTCACCTATCAGTGGTCTTGCTGCCTTGCTATATAGGAGGCCGTTGTGAGGGTGTTGTGTGTTAGAGACGTCAACACTGTAGGACTACCCCAAGGCTTCCCACCTGTAATGGCCATAGGGGTTTTCAATGTGTCCCACATcacaccctattcactacatagtgcactgcggttgaccagagccctatgggtcctggttaaatagtagtgcactgtataggggaaTGGGTTGCCATTTTGGGACGCACCCTTTGACATGAATTAAATACAGCAGGAAATAAAAAGACATGTAAGGAATCAGTTTGTTTATATTCCCGAAGGATGTTTTTCAAATAAAGAGAAAGACCACCTACCCAGCAACCGTCA

Function

symbol description
hoga1 Predicted to enable 4-hydroxy-2-oxoglutarate aldolase activity. Predicted to be involved in glyoxylate catabolic process. Predicted to be located in mitochondrion. Human ortholog(s) of this gene implicated in primary hyperoxaluria type 3. Orthologous to human HOGA1 (4-hydroxy-2-oxoglutarate aldolase 1).

NR:

description
4-hydroxy-2-oxoglutarate aldolase, mitochondrial isoform X1

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016829 lyase activity molecular_function

KEGG:

id description
K18123 HOGA1; 4-hydroxy-2-oxoglutarate aldolase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036949091.1 True 1784 mRNA 0.52 7 15744215 15760194

Neighbor

gene id symbol gene type direction distance location
LOC110485613 LOC106591333 coding downstream 39950 15627128 ~ 15704265 (-)
LOC118940331 NA coding downstream 118672 15614864 ~ 15626817 (-)
LOC118936458 LOC106591490 coding downstream 275959 15444480 ~ 15468256 (-)
LOC118940092 LOC106564328 coding downstream 305810 15288411 ~ 15438405 (-)
LOC110485609 LOC106591329 coding upstream 17493 15777687 ~ 15797879 (-)
LOC110487244 LOC105012087 coding upstream 90480 15850674 ~ 15871731 (-)
LOC110518551 LOC106591223 coding upstream 138692 15898886 ~ 15917523 (-)
LOC110485584 va0e2 coding upstream 176518 15936074 ~ 15938556 (-)
LOC118940334 p40phox coding upstream 521203 16281397 ~ 16330030 (-)
G1423783 NA non-coding downstream 2671 15740782 ~ 15741544 (-)
G1423805 NA non-coding downstream 4539 15739291 ~ 15739676 (-)
G1423803 NA non-coding downstream 12775 15731041 ~ 15731440 (-)
G1423786 NA non-coding downstream 49663 15694139 ~ 15694552 (-)
G1423821 NA non-coding upstream 4081 15764275 ~ 15775981 (-)
G1423834 NA non-coding upstream 44151 15804345 ~ 15804568 (-)
G1423844 LOC106591187 non-coding upstream 75380 15835574 ~ 15838677 (-)
G1423845 NA non-coding upstream 80103 15840297 ~ 15840845 (-)
G1423112 NA other downstream 160122 15583695 ~ 15584093 (-)
G1422920 LOC106591235 other downstream 330618 15397290 ~ 15413597 (-)
G1422918 NA other downstream 339041 15383119 ~ 15405174 (-)
G1422897 NA other downstream 409324 15333878 ~ 15334891 (-)
LOC118940320 LOC106605908 other downstream 496873 15003526 ~ 15247342 (-)
G1423836 NA other upstream 48492 15808686 ~ 15831010 (-)
G1423891 NA other upstream 225079 15985273 ~ 15986842 (-)
G1424040 NA other upstream 609563 16369757 ~ 16370443 (-)
G1424051 cbx6 other upstream 646537 16406731 ~ 16410128 (-)
G1424038 LOC106591467 other upstream 651864 16412058 ~ 16418005 (-)

Expression


Co-expression Network