LOC118940092 (LOC106564328)


Basic Information

Item Value
gene id LOC118940092
gene name LOC106564328
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 15288411 ~ 15438405 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036948328.1
tcttCGACTGCAACAATGGCCTTGAGAACAACAGGAAGTGTGTTGGgggtctttctctggtctgtagcagTGGTACTGGGTCAGGATGGCTGGAGTGTTACATACACCACTCAGAGTATCTGTACCTTGAAGGGGTCATCAGTGGATCTGTTCTGCTCTTACACATATCCCAGAGGTAAAGTCACAACAACCTTCTGGTTCACTAAAATGGAGGCTGGTATAGAACCTGAAGATCTAGGTCAGGACCCAGAGTATGCAGATCGTCTGGAGTATCATGGAGATAAGAAGAAAGACTGTACCCTGAAAAtcacagacctgagagagagagactcagctaCGTACAAGTTCAGATTATTAACAGATCAGGAAGGAGGGAAATATTCTGgaagtcctggagtcactctttctgttacagGTCTTCAGGTGAAGGTGAATGGTGGACATCAGGATAagacactgacctgtagcaccacctgtactctgactgacaaccccacctacatctggtacaagaacggacaacATCTAGATGAGAGCACCTCCCCCCAGTACAAATACTCAGTCTCCAGGAACTATGATGACACTTATTCCTGTGCTGTAAAAGGCCATGAGGACCTCcactctcctgcagtgtGTGTTCAGGGTCAGAGCTGCAACAGAGTGACTTACACCAAGAGGAGAATCTGTGTCTTGAAGGGGTCAACAGTGGACATATCCTGTACTTATGTTGGTTATTATTCCACCACATCATCATTCTGGTTTAGAAGTGATAAGTCGACCCCTGAAGACCTAACCAGAGACCCAGGGTATGCAAGTCGAGTGGAGTACACTGGAACATACGGAGTTCCCTTCACCCTGAGAATCTCAAATCTGAGAGAGGACGACTCAGCTGAGTATCGCTTCACTTTTAAAACAAACAACTTTGACTGGGGTCATAGTTTCCCAGGAAcaactctgtctgtcacagGTGTATGTGGTTTTATACATATTGTTTCAGGTctgcaggtgaaggtgactcCTGCTGCAGTGGGACAGAagacactgacctgtagcaccacctgtactctgactgacaaccccacctacatctggtacaagaacggacaacATCTAGATGAGAGCACCTCCCCCCAGTACAAAGACCCAGTCTCCAGTAACTATGAAGACAgttactcctgtgctgtaaaagGCCATGAGGATCTCCACTCTCCTGCAGTTTGTGTTCAGGGTCAGAGCTGCAACAGAGTGACTTACACCAAGAGGAGAATCTGTGTCTTGAAGGAGTCAACAGTGGACATATCCTGTACTTATGTTGGTTATTATTCCACCACATCATCATTCTGGTTTAGAAGTGATAAGTCGACCCCTGAAGACCTAACCACAAACCCAGGGTATGCAGGTCGTGTGGAGTACACTGGAACATACAGAGGTCCCTTCACCCTGAGAATCACAGATCTGAGAGAGGAGGACTCAGCTGGGTATCGCTTCACTTTTAAAGCAGACAACTTTGACTGGGGTCATAGTTTCCCAGGAAcaactctgtctgtcacagGTctgcaggtgaaggtgactcctgctgcagagggacagaatacactgacctgtagcaccacctgtactctgactgacaaccccacctacatctggtacaagaacggacaacATCTAGATGAGAGCACCTCCCCCCAGTACAAAGACCCAGTCTCCAGTAACTATGAAGACAgttactcctgtgctgtaaaagGCCATGAGGATCTCCACTCTCCTGCAGTTTGTGTTCAGGGTCAGAGCTGCAACAGAGTGACTTACATAGAGAGGAGAATCTGTGTCTTGAAGGGGTCAACAGTGTACATATACTGTACTTATGTTGGTTATTATTCCACCACATCATCATTCTGGTTTAGAAGTGATAAGTCGACCCCTGAAGACCTAACCACTGACCCAGGGTATGCAGGTCGTGTGAAGTACACTGGAACATACAGAGGTCCCTTCACCCTGAGAATCACAGATCTGAGAGAGGACGACTCAGCTGAGTATCGCTTCCCATTTAAAACAGACAACTTTGAATGGGGTCATAGTTTCCCAGGAAcaactctgtctgtcacagGTctgcaggtgaaggtgactcctgctgcagagggacagaagaaactgacctgtagcaccacctgtactctgactgacaaccccacctacatctggtacaagaacggacaacATCTAGATGAGCCCACCTCCCGGCAATACTCTGTCAATAGTTATTATTCAGACAGCtactcctgtgctgtaaaaggccatgagaatctccactctcctgcagtgtGTGTTGTGGGTGAGAGCTGTATGAATGTGACTTACACCCATCAGAGTATCTGTGCTTTGAAAGGGTCAACAGTGGACATATCCTGCTTTTACACACATCCCAGTTGGCATAACGTCACAGAAGTGTCCTGGTTCAGCAAATGGAAGTCTGGTGTCACTAAAGACCTGAGCCTGAACCCAGAGTATGCAGATCGTGTGGAATACCATCGACAAACAGAAAAGGACTCCACCCTGAGAATCACAGACCTGAGAGAAAGTGACTCAACTGAGTACAAGTTCAGATTTACAACTGATGAGGCAAGATGGGGGTACAGCTTCCCTGGAAcaactctgtctgtcacagGTTCCCAGGTGGAGGTGACTCCTAAAAGGAGATCAGAGTTGaagacactgtcctgtatcaccACCTGTACTCTCAGTAACCCCAACCCCATCTATATAtggtacaagaacggacaacATCTAGATGAGAGCACCTCCCCCCAGTACAAAGACCCAGTCTCCAGTAACTATGAAGACAgttactcctgtgctgtaaaagGTCATGAGGATCTCcactctcctgcagtgtGTGTTCAGGGTCAGAGCTGCTACAGAGTGACTTACACCAAGAGGAGAATCTGTGTCTTGAAGGGGTCAACAGTGGACATATCCTGTACTTATGTTGGTTATTATTCCACCACATCATCATTCTGGCTTAGAAGTGATAAGTCGACCCCTGAAGACCTAACCACAGACCCAGGGTATGCAGGTCGTGTGGAGTACACTGGAACATACAGAGGTCCCTTCACCCTGAGAATCACAGATCTGAGAGAGGAGGACTCAGCTGAGTATCGCTTCACTTTTAAAGCAAACAACTTTGAATGGGGTCATAGTTTCCCAGGAAcaactctgtctgtcacagGTctgcaggtgaaggtgactcctgctgcagagggacagaaGAAACTGACCTGtatcaccacctgtactctgactgacaaccccacctacatctggtacaagaacggacaacATCTAGATGAGAGCACCTCCCCCCAGTACAAAGACCCAGTCTCCAGTAACTATGAAGACAgttactcctgtgctgtaaaaggccatgagaatctccactctcctgcagtgtGTGTTGTGGGTGAGAGCTGTATGAATGTGACTTACACCCATCAGAGTATCTGTGCTTTGAAAGGGTCAACAGTGGACATATCCTGCTTTTACACACATCCCAGGTGGCATAACGTCACAGAAGTGTCCTGGTTCAACAAATGGGAGTCTGGTGTCACTAAAGACCTGAGCCTGAACCCAGAGTATGCAGATCGTTTGGAATACCATCGACAAACAGACAAGGACTCCACCCTGAGAATCACAGACCTGAGAGAAAGTGACTCAACTGAGTACAAGTTCAGATTTACATCTGACGAGGCAAGATGGGGGTACAGCTTCCCTGGAAcaactctgtctgtcacagGTTTTCAGGTGGAGGTGACTCCTAAATGGAGTTCAGAGTTGaagacactgtcctgtatcaccACCTGTACTCTCAGTAACCCCAACCCCATCTATATAtggtacaagaacggacaacATCTAGATGAGAGCACCTCCCCCCAGTACAAATACTCAGTCTCCAATGACTATGATGCCAGTTATTCCTGTGCTGTAAAAGGTCATGAGGATCTCcactctcctgcagtgtGTGTTCAGGGTCAGAGCTGCAACAGAGTGACTTACACCAAGAGGAGAATCTGTGTCTTGAAGGGGTCAACAGTGGACATATCCTGTACTTATGTTGGTTATTATTCCACCACATCATCATTCTGGTTTAGAAGTGATAAGTCGACCCCTGAAGACCTAACCAGAGACCCAGGGTATGCAAGTCGAGTGGAGTACACTGGAACATACGGAGTTCCCTTCACCCTGAGAATCTCAAATCTGAGAGAGGACGACTCAGCTGAGTATCGCTTCACTTTTAAAACAAACAACTTTGACTGGGGTCATAGTTTCCCAGGAACAACTCTGTTTGTCACAGGTctgcaggtgaaggtgactcCTGCTGCAGTGGGACAGAagacactgacctgtagcaccacctgtactctgactgacaaccccacctacatctggtacaagaacggacaacATCTAGATGAGAGCACCTCCCCCCAGTACAAAGACCCAGTCTCCAGTAACTATGAAGACAgttactcctgtgctgtaaaagGCCATGAGGATCTCCACTCTCCTGCAGTTTGTGTTCAGGGTCAGAGCTGCAACAGAGTGACTTACACCAAGAGGAGAATCTGTGTCTTGAAGGAGTCAACAGTGGACATATCCTGTACTTATGTTGGTTATTATTCCACCACATCATCATTCTGGTTTAGAAGTGATAAGTCGACCCCTGAAGACCTAACCACAAACCCAGGGTATGCAGGTCGTGTGGAGTACACTGGAACATACAGAGGTCCCTTCACCCTGAGAATCACAGATCTGAGAGAGGAGGACTCAGCTGGGTATCGCTTCACTTTTAAAGCAGACAACTTTGACTGGGGTCATAGTTTCCCAGGAAcaactctgtctgtcacagGTctgcaggtgaaggtgactcctgctgcagagggacagaatacactgacctgtagcaccacctgtactctgactgacaaccccacctacatctggtacaagaacggacaacATCTAGATGAGAGCACCTCCCCCCAGTACAAAGACCCAGTCTCCAGTAACTATGAAGACAgttactcctgtgctgtaaaagGCCATGAGGATCTCCACTCTCCTGCAGTTTGTGTTCAGGGTCAGAGCTGCTACAGAGTGACTTACACCAAGAGGAGAATCTGTGCCCTGAAGGGGTCAACAGTGGACATATCCTGTACTTATGTTGGTTTTTATAACACCACATCATCATTCTGGTTTAGAAGTGATAAGTCGACCCCTGAAGACCTAACCACAGATCCAGGGTATGAAGGTCGTGTGGAGTACACTGGAACATACAGAGGTCCCTTCACCCTGAGAATCACAGATCTGAGAGAGGAGGACTCAGCTGAGTATCGCTTCACTTTTAAAACAGACAACTTTGACTGGGGTCATAGTTTCCCAGGAACAACTCTGACTGTCacagACctgcaggtgaaggtgactcCTGGCACAGTGACAGAAGGATCATGGGTTACACTgacatgtagcaccacctgtactctaaCTGAAATCCCCAAgcccacctacatctggtacatGAACGGAGAATATCTATTTTCTGACTCCTCTTCCCAGTATCAATACTCAGTCAGTAGAGGAGGTTCTGACAGCTACTCCTGTGCCTTAAGAGGCCATGACAAACTCAGCTCTCCTGAAGTCACAGTGGATACTTCTTCTCTGAGCTGCTTAAGGGTGACCTACACCAGTAGAAGCATTTGTTCCTTGATACCATCCGAGGACCTGCCTTGCACTACCATATATTCCACAGACctgcaggtgaaggtgactcCTGACACAGAGGCAGGGAAGAggacactgacctgtagcaccacctgtactctgactgacaaccccacctacatctggtacagGAATGGACAGTCTCTTGCTTGGCTCACTTCCCAACAACACTCTGTCTGGAGTTCTGAAACAGAGAGTTACTCCTGTGCTGTTAAAGGCCATGAGGATCTCCGctctcctgcagtgtGTGTTCAGGGTCACAACCGCTGGAGTGTGACTTACACCAAGAGGAGAATCTGTGTCTTGAAGGGGTCAACAGTGAACATATCCTCCTCTTACACTCATCCCACTTGTTATATAGAACAAGGTTCATTCTGGTTTACACAGAAAGACCCTGTAGATCTCAGGTCATATCCAGAGTCTGCAGGTCATGTGGAGTACAATAGGAACACAGAGAACCACCACACCATGACAATAACACACCTGACAGAGAAGGACTCGGCTGAATACAAATTCAGATTACTAACAACAGATGAGGGGAGATTTTCTGGCCTTCCTGGTGTGATGTTGACTGTCACAGatatcctgttggagatggatcCTACGTCTGTGTCAGAGGGGGGGTGGGTCACACTGAGATGTAGAACCCAATGTCGAGTCGGTCtcaaccccacctacatctggtacaagaatGGACAATATCTAGAGCAGTGGACTTCCTCTATAAACTCTAAATATGTCTACAGTATGGATGCAGGCAGCTACTCCTGTTCTTTAAAAGGCCATGAGGATCTCCGctctcctgcagtgtGTGTTCATAATTCAAACTGCTGGAGTGTGACTTACACCAAGAGGAGAATCTATGTCTTGAAGGGCTCCACAGTGAACATATCCTGCTATTACACTCATGCCACTAGTTATATTGAACAAGGTTCATTCTGGTTTACAAAGAAACACCCTGTAGATCTCAGGTCATATCCAAAGTATACAGGTCGTGTGGAGTACAATAGGAACACAGAGAACAACCACACCATGACAATAACACACCTGACAGAGAAGGACTCAGCTGAATACAAATTTAGATTACTAACAACAGATAAGGGGAGATTTTCTGGTCTTCCTGGTGTGATGTTGACTGTCACAGatatcctgttggagatggatcCTACGTCTGtgtcagagggggagagagtcacaCTGAGATGTAGAACCCAATGTCGAGTCGGTCtcaaccccacctacatctggtacaagaacggacaaAGTCTGACCAACCCAATCACCAGTTATAACAGCCTGATCCTAGACCCAGTCAGCAGTGAGGATGCAGGGAACTACTCCTGTGCTGTAGAAGGCTTAGAGAGAATCCTCTCTCCAGAAGAGACTCTCACTGTCAGATATGGCCCAAAGAAcacctcagtgtcagtcagtccttctggtgaaatagtggagggcagttcagtgactctgacctgcagcagttATGCCAACCCTCCTGTGGACAAATACACCTGGTACAACAAGAATGGAGGTCACTATCAGTTCTCCTATGGGATCACAGGACCACATCTTGTCTTCAATCAAATCAAGTCCTCAGTCACTGGAGAGTACTACTGTGAGGCCTGGAATGGGATTAAGACGGGGAAGTCTGAGTCAATCAACATCAATGTGAAATACGCTCCAAAGAAcacctcagtgtcagtcagtccctctggtgaactagtggagggcagttcagtgactctgacctgcagcTGTGATGCTAACCCACCTGTGGACAAATACACCTGGTACAAGAAGAACTTAGCCTCACCAAAAGCATCAGGACAGAGTTACAGCATCACTAACATCAGctctgaggacagaggagaatatTACTGTGAGGCTGAGAATAAATATGGACGTCTCAACTCTTCTTCTGTGTCTGTGGACGTTCAGTATGGTCCAAAGAAcacctcagtgtcagtcagtccctctggtgaaatagtggagggcagttcaatgactctgacctgcagcagtgatgccaacccacctgTGGACAAATACACCTGGTACAAGAAGAACGTAACCTCACCAAAAGCATCAGGACAGAGTTACAGCATCACTAACATCATctctgaggacagaggagaatatTACTGTGAGGCCCAGAATGGAAGAGGATCTATGAACTCTACAGCTCTGATGATCATTGTAGCAGGGAAACAAATATCAGTTCTGACTGCAGCTGTCGGAATCATTGTTGTTGTTCTGGttctcatcctctgtctctctggactCATGTGGTTCAGGAAGAAGAACTCCACATCCACCTCCAACACAAGAGACACAGCAGATGATGGACAGggaGACTCTAGTCCAGTGTATGACAATGTCTCAAACATGGCCATGACCCCTACTGCAGCACAGACAGAGTCCACATACGACCAGGATGATGTTCACTACGCCAGCGTCCACTTCTCTCACTCCAAAAAACAGGAAGTGCCTCTGTACTCCACCGTCCAAGTGCCTCAGCCCCAGAAACAGGATGAGGATGTCCAGTACGCTGCTGTGAAATTCAACCTCCCCTGTGCTGCCACCCGaccAGCAGCAGCACAAGCAGCTGAGGTGGATGCCTCTGAGATCTACAGTACagtcaacaaacccagaaccaagaagacctgaacacaacaaacccagaaccaagaagacctgaacacaacaaacccagaaccaagatgACCTGAACACAAAGGCCCAGAACCACAAACCCAGAACCAGGAAGAACTGAACACAACAatcccagaaccaagaagacctgaacacaacaaacccagaaccaagaatacctgaacacaacaaacccagaaccaagaagacctgaacacaaaGGCCCAGAACCACAAACCCAGAACCAGGAAGAACTGAACACAACAaaaccagaaccaagaagacctgaacacaacaaacccagaaacaAGAAGAcatgaacacaacaaacccagaaccaagaagacctgaacacaaaGGCCCAGAACCACAAACCCAGAACCAGGAAGaactgaacacaacaaacccagaaccaagaagacatGAACACAAAGGCCCAGAAccacaaacccagaaccaagaagaacTGAACACAACAAAACCAGAACCAAtaagacctgaacacaacaaacccagaaacaagaagacctgaacacaacaaacccagaaccaagaagacatGAACACAAAGGCCCAGAACCACAAACCCAGAACCAGGAAGAACTGAACACAACAaaaccagaaccaagaagacctgaacacaacaaacccagaaacaAGAAGACATGAACACAACAA
>TU1628808
ggacactgacctgtagcaccacctgtactctgactgacaaccccacctacatctggtacagGAATGGACAGTCTCTTGCTTGGCTCACTTCCCAACAACACTCTGTCTGGAGTTCTGAAACAGAGAGTTACTCCTGTGCTGTTAAAGGCCATGAGGATCTCCGctctcctgcagtgtgtgttCAGGGTCACAACTGCTGGAGGGTGACTTACACCAAGAGGAGAATCTGTGTCTTGAAGGGCTCCACAGTGAACATATCCTGCTCTTACACTCATCCCACTAGTTATATAGAACAAGGTTCATTCTGGTTTACACAGAAAGACCCTGTA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036948328.1 False 9108 mRNA 0.47 34 15288411 15438405
TU1628808 True 329 lncRNA 0.49 2 15335165 15335605

Neighbor

gene id symbol gene type direction distance location
LOC118940319 LOC106564328 coding downstream 50993 15132799 ~ 15237418 (-)
LOC118940326 LOC106591409 coding downstream 109164 15176941 ~ 15179247 (-)
LOC118940325 LOC106598058 coding downstream 146597 15139726 ~ 15141814 (-)
LOC118940091 LOC106591560 coding downstream 156977 15081145 ~ 15131434 (-)
LOC118940321 LOC106598058 coding downstream 175538 15101681 ~ 15112873 (-)
LOC118936458 LOC106591490 coding upstream 6075 15444480 ~ 15468256 (-)
LOC118940331 NA coding upstream 176459 15614864 ~ 15626817 (-)
LOC110485613 LOC106591333 coding upstream 189143 15627128 ~ 15704265 (-)
LOC110487262 hoga1 coding upstream 305810 15744215 ~ 15760194 (-)
LOC110485609 LOC106591329 coding upstream 339282 15777687 ~ 15797879 (-)
G1422903 NA non-coding downstream 13196 15211054 ~ 15275215 (-)
G1422891 LOC106601621 non-coding downstream 39374 14907317 ~ 15353090 (-)
G1422951 NA non-coding downstream 50233 15027545 ~ 15238178 (-)
G1422993 NA non-coding downstream 54723 15232652 ~ 15233688 (-)
G1423053 NA non-coding upstream 33420 15471825 ~ 15472041 (-)
G1423060 LOC105021375 non-coding upstream 44737 15483142 ~ 15483477 (-)
G1423068 NA non-coding upstream 55444 15493849 ~ 15494288 (-)
G1423067 NA non-coding upstream 56655 15495060 ~ 15495865 (-)
G1423069 NA non-coding upstream 59276 15497681 ~ 15497991 (-)
LOC118940320 LOC106605908 other downstream 41069 15003526 ~ 15247342 (-)
G1422796 NA other downstream 519773 14765531 ~ 14768638 (-)
G1422757 NA other downstream 695817 14591466 ~ 14592594 (-)
LOC110485498 LOC106592261 other downstream 944573 14293700 ~ 14343967 (-)
LOC110485493 LOC106592221 other downstream 999398 14275862 ~ 14289159 (-)
G1423112 NA other upstream 145290 15583695 ~ 15584093 (-)
G1423836 NA other upstream 370281 15808686 ~ 15831010 (-)
G1423891 NA other upstream 546868 15985273 ~ 15986842 (-)
G1424040 NA other upstream 931352 16369757 ~ 16370443 (-)
G1424051 cbx6 other upstream 968326 16406731 ~ 16410128 (-)
LOC118940327 NA coding upstream 37756 15373361 ~ 15375117 (-)
G1422959 NA non-coding downstream 4202 15077887 ~ 15330963 (-)
G1422999 NA non-coding downstream 24599 15251787 ~ 15310566 (-)
G1423021 NA non-coding upstream 2043 15337648 ~ 15338193 (-)
G1423025 NA non-coding upstream 18927 15354532 ~ 15356435 (-)
G1423032 NA non-coding upstream 41734 15377339 ~ 15426302 (-)
G1423038 LOC106591342 non-coding upstream 62563 15398168 ~ 15398588 (-)
G1422897 NA other downstream 274 15333878 ~ 15334891 (-)
G1422918 NA other upstream 47514 15383119 ~ 15405174 (-)
G1422920 LOC106591235 other upstream 61685 15397290 ~ 15413597 (-)

Expression


Co-expression Network