LOC118940320 (LOC106605908)


Basic Information

Item Value
gene id LOC118940320
gene name LOC106605908
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 15003526 ~ 15247342 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036949066.1
AGCCTCACAGCTTGAGGATAGGTGCTATCAttgaacctggtggtcagtctttagtcaCTGGCTGTTTAGCCTCACAGCTTGGGGATAGGTGCTATCAttgaacctggtggtcagtctttaggctgctgtacagatTGACGGACTGTAGAGGATTGAACATTTATCCTtctatatttggggttctgagaATAAAACAGCTTCAGAACAATCAATGTAGAAATATGTGTTTACAGTTCAATAagtgattgttgttgttgttgtttacaatgatgatgatgactacTGTATATATTAGGAATTTATTTTTGCATCATGTCAGTTTAAGTagacagacgtagacagacatgcaacacatcacacacattacatacatacatagtgcagtagacttacagacagacagtattcaCATAGACAACCATTtagcacaatacaacacaacacaatatgagCCTGGTTCATTTTCAGTAATGAGGCCCTGTACCCCATTTACAGTTTCTACTTCAATGTATCAGGTGGAGTTATTCACCAGCTATAGAgtgagttgttgtttatgtttctaagactgcagggtgggagatgcaacaatggccttgagaacagcaggaagtgtgttggtggtctttctctggtctgtgaCAGTGGTACTGGGTCAGGATGGCTGGAGTGTTACATACACCACTCAGAGTATCTGTACCTTGAAGGGGTCATCAGTGGATCTGTTCTGCTCTTACACATATCCCAGAGGTAAAGTCACAACAACCTTCTGGTTCACTAAAATGGAGGCTGGTATAGAACCTGAAGATCTAGGTCAGGACCCAGAGTATGCAGATCGTCTGGAGTATCACGGAGATAAGAAGAAAGACTGTACCCTGAAAAtcacagacctgagagagagagactcagctaCGTACAAGTTCAGATTATTAACAGATCAGGAAGGAGGGAAATATTCTGgaagtcctggagtcactctttctgttacagGTCTTCAGGTGAAGGTGAATGGTGGACATCAGGATAagacactgacctgtagcaccacctgtactctgactgacaaccccacctacatctggtacaagaacggacaacATCTAGATGAGAGCACCTCCCCCCAGTACAAATACTCAGTCTCCAGGAACTATGATGACACTTATTCCTGTGCTGTAAAAGGCCATGAGGACCTCcactctcctgcagtgtGTGTTCAGGGTCAGAGCTGCAACAGAGTGACTTACACCAAGAGGAGAATCTGTGTCTTGAAGGGGTCAACAGTGGACATATCCTGTACTTATGTTGGTTATTATTCCACCACATCATCATTCTGGTTTAGAAGTGATAAGTCGACCCCTGAAGACCTAACCAGAGACCCAGGGTATGCAAGTCGAGTGGAGTACACTGGAACATACGGAGTTCCCTTCACCCTGAGAATCTCAAATCTGAGAGAGGACGACTCAGCTGAGTATCGCTTCACTTTTAAAACAAACAACTTTGACTGGGGTCATAGTTTCCCAGGAACAACTCTGTTTGTCACAGGTctgcaggtgaaggtgactcCTGCTGCAGTGGGACAGAagacactgacctgtagcaccacctgtactctgactgacaaccccacctacatctggtacaagaacggacaacATCTAGATGAGAGCACCTCCCCCCAGTACAAAGACCCAGTCTCCAGTAACTATGAAGACAgttactcctgtgctgtaaaagGCCATGAGGATCTCCACTCTCCTGCAGTTTGTGTTCAGGGTCAGAGCTGCAACAGAGTGACTTACACCAAGAGGAGAATCTGTGTCTTGAAGGAGTCAACAGTGGACATATCCTGTACTTATGTTGGTTATTATTCCACCACATCATCATTCTGGTTTAGAAGTGATAAGTCGACCCCTGAAGACCTAACCACAAACCCAGGGTATGCAGGTCGTGTGGAGTACACTGGAACATACAGAGGTCCCTTCACCCTGAGAATCACAGATCTGAGAGAGGAGGACTCAGCTGGGTATCGCTTCACTTTTAAAGCAGACAACTTTGACTGGGGTCATAGTTTCCCAGGAAcaactctgtctgtcacagGTctgcaggtgaaggtgactcctgctgcagagggacagaatacactgacctgtagcaccacctgtactctgactgacaaccccacctacatctggtacaagaacggacaacATCTAGATGAGAGCACCTCCCCCCAGTACAAAGACCCAGTCTCCAGTAACTATGAAGACAgttactcctgtgctgtaaaagGCCATGAGGATCTCCACTCTCCTGCAGTTTGTGTTCAGGGTCAGAGCTGCAACAGAGTGACTTACACCAAGAGGAGAATCTGTGTCTTGAAGGAGTCAACAGTGGACATATCCTGTATTTATGTTGGTTATTATTCCACCACATCATCATTCTGGTTTAGAAGTGATAAGTCGACCCCTGAAGACCTAACCACAGACCCAGGGTATGCAGGTCGTGTGGAGTACACTGGAACATACAGAGGTCCCTTCACCCTGAGAATCACAGATCTGAGAGAGGAGGACTCAGCTGAGTATCGCTTCACTTTTAAAACAGACAACTTTGAATGGGGTCATAGTTTCCCAGGAAcaactctgtctgtcacagGTctgcaggtgaaggtgactcctgctgcagagggacagaagacactgacctgtagcaccacctgtactctgactgacaaccccacctacatctggtacaagaacggacaacGTCTAGATGAGCCCACTTCCCAACAATACTCTAGTAATATCCTAGTAGTGTTGGGTCATTCTGCGGACAGTTACTCCTGTGCTGTAGAACACCATGAGGACCTCCACTCTCCTGCAGTGTATGGACCAAAGAAcacctcagtgtcagtcagtccctctggtgaaatagtggagggcagttcagtgactctgacctgcagcagtgatTCCAACCCACCTGTGGACAAATACACCTGGTACAAGAAGAATGGAGGTCACTATCAGTTCTCCAATGTGAACACAGGACCACATCTTGTCTTCAATCTTATCAAGTCATCTGACACTGGAGAGTACTACTGTGAGGCCTGGAATGGGATTAAAATGGGGAAGTCTGAGTCAATCAACATCAATGTGAAATACGCTCCAAAGAAcacctcagtgtcagtcagtccctctggtgaaatagtggagggcagttcagtgactctgacctgcagcagtgatgccaacccacctgTGGACAAATACACCTGGTACAAGAAGAACTTAGCCTCACCAAGAGCATCAGGACAGAGTTACAGCATCACTAACATCATctctgaggacagaggagaatatTACTGTGAGACTGAGAATAAATATGGACGTCTCAACTCTTCTTCTGTGTCTGTGGACGTTCAGTACGGCCCAAAGAAcacctcagtgtcagtcagtccctctggtgaaatagtggagggcagttcagtgactctgacctgcagcagtgatgccaacccacctgTGGACAAATACACCTGGTACAAGAAGAACGTAACCTCACCAAAAGCATCAGGACAGAGTTACAGCATCACTAACATCATctctgaggacagaggagaatatTACTGTGAGGCCCAGAATGGAAGAGGATCTATGAACTCTACAGCTCTGATGATCATTGTAGCAGGGAAACAAATATCAGTTCTGACTGCAGCTGTAGGAATCATTGTTGTTGTTCTGGttctcatcctctgtctctctggactCATGTGGTTCAGGAAGAAGAACTCCACATCCACCTCCAACACAAGAGACACAGCAGATGATGGACAGggaGACTCTAGTCCAGTGTATGACAATGTCTCAAACATGGCCATGACCCCTACTGCAGCACAGACAGAGTCCACATACGACCAGGATGATGTTCACTACGCCAGCGTCCACTTCTCTCACTCCAAAAAACAGGAAGTGCCTCTGTACTCCACCGTCCAAGTGCCTCAGCCCCAGAAACAGGATGAGGATGTCCAGTACGCTGCTGTGAAATTCAACCTCCCCTGTGCTGCCACCCGaccAGCAGCAGCACAAGCAGCTGAGGTGGATGCCTCTGAGATCTACAGTACagtcaacaaacccagaaccaagaagacttgaacataacaaacccagaaccaagaagacctgaacacaaaGGCCCAGAACCACAAACCCAGAACCAGGAAGaactgaacacaacaaacccagaaccaagaagacctgaacacaacaaacccagaaccaa
>TU1628852
CAGCAGTGAGGATACAGGCAGATACTCCTGTTCTGTAGAAGGACATGAGGATCTCCCCTCTGCTGAAGAGACTCTCACTGTCACATACGGCCCAAAGAAcacctcagtgtcagtcagtccctctggtgaaatagtggagggcagttcagtgactctgacctgcagcagtgatgccaacccacctgTGGACAAATACACCTGGTACAAGAAGAACGTAACCTCACCAAAAGCATCAGGACAGAGTTACAGCATCACTAACATCATctctgaggacagaggagaatatTACTGTGAGGCCCAGAATGGAAGAGGATCTATGAACTCTACAGCTCTGATGATCATTGTAGCAGGGAAACAAATATCAGTTCTGACTGCAGCTGTAGGAATCATTGTTGTTGTTCTGGttctcatcctctgtctctctggactCATGTGGTTCAGGAAGAAGAACTCCACATCCACCTCCAACACAAGAGACACAGCAGATGATGGACAGggaGACTCTAGTCCAGTGTATGACAATGTCTCAAACATGGCCATGACCCCTACTGCAGCACAGACAGAGTCCACATACGACCAGGATGATGTTCACTACGCCAGCGTCCACTTCTCTCACTCCAAAAAACAGGAAGTGCCTCTGTACTCCACCGTCCAAGTGCCTCAGCCCCAGAAACAGGATGAGGATGTCCAGTACGCTGCTGTGAAATTCAACCTCCC

Function

NR:

description
PREDICTED: B-cell receptor CD22-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036949066.1 False 4275 mRNA 0.47 16 15003526 15065482
TU1628852 True 717 TUCP 0.49 5 15006839 15247342

Neighbor

gene id symbol gene type direction distance location
LOC118940322 LOC106598058 coding downstream 34472 14954929 ~ 15014095 (-)
LOC110518890 LOC106591554 coding downstream 338955 14647842 ~ 14664571 (-)
ogal LOC106564358 coding downstream 356015 14627727 ~ 14647511 (-)
tk1 kith coding downstream 420066 14578371 ~ 14583460 (-)
LOC110485503 LOC106593098 coding downstream 496589 14459338 ~ 14506937 (-)
LOC118940324 LOC106605911 coding upstream 13953 15079435 ~ 15083786 (-)
LOC118940328 NA coding upstream 33051 15098533 ~ 15099673 (-)
LOC118940321 LOC106598058 coding upstream 36199 15101681 ~ 15112873 (-)
LOC118940091 LOC106591560 coding upstream 61041 15081145 ~ 15131434 (-)
LOC118940319 LOC106564328 coding upstream 67317 15132799 ~ 15237418 (-)
G1422935 NA non-coding downstream 49227 14953858 ~ 14954299 (-)
G1422908 NA non-coding downstream 54290 14924141 ~ 14949236 (-)
G1422907 NA non-coding downstream 71937 14929084 ~ 14931589 (-)
G1422886 NA non-coding downstream 107881 14895026 ~ 14895645 (-)
G1422879 NA non-coding downstream 124163 14878595 ~ 14879363 (-)
G1422959 NA non-coding upstream 12405 15077887 ~ 15330963 (-)
G1422960 NA non-coding upstream 20600 15086082 ~ 15133650 (-)
LOC110494998 LOC106596103 non-coding upstream 30116 14908527 ~ 15433659 (-)
G1422963 NA non-coding upstream 35797 15101279 ~ 15173836 (-)
G1422796 NA other downstream 234888 14765531 ~ 14768638 (-)
G1422757 NA other downstream 410932 14591466 ~ 14592594 (-)
LOC110485498 LOC106592261 other downstream 659688 14293700 ~ 14343967 (-)
LOC110485493 LOC106592221 other downstream 714513 14275862 ~ 14289159 (-)
LOC110485459 LOC106564320 other downstream 1038189 13959793 ~ 13997078 (-)
G1422897 NA other upstream 268396 15333878 ~ 15334891 (-)
G1422918 NA other upstream 317637 15383119 ~ 15405174 (-)
G1422920 LOC106591235 other upstream 331808 15397290 ~ 15413597 (-)
G1423112 NA other upstream 518213 15583695 ~ 15584093 (-)
G1423836 NA other upstream 743204 15808686 ~ 15831010 (-)
LOC118940092 LOC106564328 coding upstream 41069 15288411 ~ 15438405 (-)
LOC118940323 LOC106601626 coding upstream 70409 15317751 ~ 15347285 (-)
LOC118940327 NA coding upstream 126019 15373361 ~ 15375117 (-)
LOC118936458 LOC106591490 coding upstream 197138 15444480 ~ 15468256 (-)
LOC118940331 NA coding upstream 367522 15614864 ~ 15626817 (-)
G1422999 NA non-coding upstream 4445 15251787 ~ 15310566 (-)
G1423002 NA non-coding upstream 12795 15260137 ~ 15394108 (-)
G1423021 NA non-coding upstream 90306 15337648 ~ 15338193 (-)
G1423025 NA non-coding upstream 107190 15354532 ~ 15356435 (-)

Expression


Co-expression Network