LOC118940323 (LOC106601626)


Basic Information

Item Value
gene id LOC118940323
gene name LOC106601626
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 15317751 ~ 15347285 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036949069.1
tctttagtcaCTGGCTGTTTAGCCTCACAGCTTGAGGATAGGAGCTATCAttgaacctggtggtcagtctttaggctgctgtacagatTGACGGACTGTAGAGGATTGAACATTTATCCTtctatatttggggttctgagaATAAAACAACTTCAGAACAATCAATGTAGAAATATGTGTTTACAGTTCAATAagtgattgttgttgttgttgtttacaatgatgatgatgactacTGTATATATTAGGAATTTATTTTTGCATCATGTCAGTTTAAGTagacagacgtagacagacatgcaacacatcacacacattacatacaaACATAGTGCAGtagacttacagacagacagtattcaCATAGACAACCATTTAGCACAATACAACAAAACACAATATGAGCCTGGTTCATTTTCAGTAATGAGGCCCTGTACCCCATTTACAGTTTCTACTTCAATGTATCAGGTGGAGTTATTCACCAGCTATAGAgtgagttgttgtttatgtttctaagactgcagggtgggagatgcaacaatggccttgagaacagcaggaagtgtgttggtggtctttctctggtctgtgaCAGTGGTACTGGGTCAGAATGGCTGGAGTGTTACATACACCACTCAGAGTATCTGTACCTTGAAGGGGTCATCAGTGGATCTGTTCTGCTCTTACACATATCCCAGAGGTACAGTCACAACAACACTCTGGTTCACTAAAATGGAGGCTGGTAAAGAACCTAAAGATCTAGGTCAGGACCCAGAGTATGCAGGTCGTCTGGAGTATCATGGAGATAAGAAGAAAGACTGTACCCTGAAAAtcacagacctgagagagagagactcagctaCGTACAAGTTCAGATTATTAACAGATCAGGACGGAGGGAAATATTCTGgaagtcctggagtcactctgtctgttacagCTCTGCAGGTGAAGATAACTTCTAAAACTTTGCAAAATTGGGtgacactgacctgtagcaccacctgtactctgactgacaaccccacctacatctggtacaagaacggacacAAAGTAAAGGAGGACACCTCCAGCCTGTACTCAGACTACTTTAGTGATGCAGACAgttactcctgtgctgtaaaaggccatgaggatctccactctcctgcagtgtGTGTTCAGGGTCAGAGCTGCAACAGAGTGACTTACACCAAGAGGGGAATCTGTGTCTTGAAGGGGTCAACAGTGGACATATCCTGTACTTATGTTAGTTATTATTCCACCACATCAACATTCTGGTTTAGAAGTGATAAGTCGACCCCTGAAGACCTAACCACAGAACCAGGGTATGTAGGTCGTGTGAAGTACACTGGAACATACAGAGGTCCCTTCACCCTGAGAATCACAGATCTGAGAGAGGAGGACTCAGCTGAGTATCGCTTCACTTTTAAAACAGACAACTTTGAATGGGGTCATAGTTTCCCAGGAAcaactctgtctgtcacagGTctgcaggtgaaggtgactcctgctgcagagggacagaagacactgacctgtatcaccacctgtactctgactgacaaccccacctacatctggtacaagaacggacaacGTCTAGATGAGCCCACTTCCCAACAATACTCTAGTAATACCCTAGTAGTGTTGGGTCATTCTGTGGACAGTTACTCCTGTACTGTAGAACACCATGAGGACCTCcactctcctgcagtgtATGCTCCAAGGAACCcctcagtgtcagtcagtccctctggtgaaatagtggagggcagttcagtgactctgacctgcagcagtgatgccaacccacctgTGGACAAATACACCTGGTACAAGAAGAACGTAACCTCACCAAAAGCATCAGGACAGAGTTACAGCATCACTAACATCAGctctgaggacagaggagaatatTACTGTGAGGCCCAGAATGGAAGAGGATCTATGAACTCTACAGCTCTGATGATCATTGTAGCAGGGAAACAGACCTCAGTTGTGACTGCAGCTGTAGGAATCATAGTGGTTGTTCTGGttctcatcctctgtctctctggactCATGTGGTTCAGGAGATTCACAGGAGGAAGTGATGCGACAACAGACACACAGagtgTCCGTCCTGACTGTAACAGTGACACGTACACAGGTCTGAACATGAGGACCATGTCCCCTGACTATGACACTCTGGCAAGTGTCAATCCTGACCCTAACAGTGACCCCAACAGTGACATGTACACACCTCTGAACATGAAGACCAGGTCACCAGAGTATGACACCCTGGcaAATGTGAGGGGACCCTCCCACttaagagaaccaccacagatcctggactgaagagaaccaccacagatcctggactgaagagaaccaccacagatcctggactgaagagaaccaccaccgA
>XM_036949070.1
gacaCTTTGTGAATATGGACCCTGGACTGGTTTAATGTATCAGGTGGAGTTATTCACCAGCTATAGAgtgagttgttgtttatgtttctaagactgcagggtgggagatgcaacaatggccttgagaacagcaggaagtgtgttggtggtctttctctggtctgtgaCAGTGGTACTGGGTCAGAATGGCTGGAGTGTTACATACACCACTCAGAGTATCTGTACCTTGAAGGGGTCATCAGTGGATCTGTTCTGCTCTTACACATATCCCAGAGGTACAGTCACAACAACACTCTGGTTCACTAAAATGGAGGCTGGTAAAGAACCTAAAGATCTAGGTCAGGACCCAGAGTATGCAGGTCGTCTGGAGTATCATGGAGATAAGAAGAAAGACTGTACCCTGAAAAtcacagacctgagagagagagactcagctaCGTACAAGTTCAGATTATTAACAGATCAGGACGGAGGGAAATATTCTGgaagtcctggagtcactctgtctgttacagCTCTGCAGGTGAAGATAACTTCTAAAACTTTGCAAAATTGGGtgacactgacctgtagcaccacctgtactctgactgacaaccccacctacatctggtacaagaacggacacAAAGTAAAGGAGGACACCTCCAGCCTGTACTCAGACTACTTTAGTGATGCAGACAgttactcctgtgctgtaaaaggccatgaggatctccactctcctgcagtgtGTGTTCAGGGTCAGAGCTGCAACAGAGTGACTTACACCAAGAGGGGAATCTGTGTCTTGAAGGGGTCAACAGTGGACATATCCTGTACTTATGTTAGTTATTATTCCACCACATCAACATTCTGGTTTAGAAGTGATAAGTCGACCCCTGAAGACCTAACCACAGAACCAGGGTATGTAGGTCGTGTGAAGTACACTGGAACATACAGAGGTCCCTTCACCCTGAGAATCACAGATCTGAGAGAGGAGGACTCAGCTGAGTATCGCTTCACTTTTAAAACAGACAACTTTGAATGGGGTCATAGTTTCCCAGGAAcaactctgtctgtcacagGTctgcaggtgaaggtgactcctgctgcagagggacagaagacactgacctgtatcaccacctgtactctgactgacaaccccacctacatctggtacaagaacggacaacGTCTAGATGAGCCCACTTCCCAACAATACTCTAGTAATACCCTAGTAGTGTTGGGTCATTCTGTGGACAGTTACTCCTGTACTGTAGAACACCATGAGGACCTCcactctcctgcagtgtATGCTCCAAGGAACCcctcagtgtcagtcagtccctctggtgaaatagtggagggcagttcagtgactctgacctgcagcagtgatgccaacccacctgTGGACAAATACACCTGGTACAAGAAGAACGTAACCTCACCAAAAGCATCAGGACAGAGTTACAGCATCACTAACATCAGctctgaggacagaggagaatatTACTGTGAGGCCCAGAATGGAAGAGGATCTATGAACTCTACAGCTCTGATGATCATTGTAGCAGGGAAACAGACCTCAGTTGTGACTGCAGCTGTAGGAATCATAGTGGTTGTTCTGGttctcatcctctgtctctctggactCATGTGGTTCAGGAGATTCACAGGAGGAAGTGATGCGACAACAGACACACAGagtgTCCGTCCTGACTGTAACAGTGACACGTACACAGGTCTGAACATGAGGACCATGTCCCCTGACTATGACACTCTGGCAAGTGTCAATCCTGACCCTAACAGTGACCCCAACAGTGACATGTACACACCTCTGAACATGAAGACCAGGTCACCAGAGTATGACACCCTGGcaAATGTGAGGGGACCCTCCCACttaagagaaccaccacagatcctggactgaagagaaccaccacagatcctggactgaagagaaccaccacagatcctggactgaagagaaccaccaccgA

Function

NR:

description
B-cell receptor CD22-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036949069.1 False 2413 mRNA 0.46 11 15317751 15322714
XM_036949070.1 True 1988 mRNA 0.48 12 15317751 15347285

Neighbor

gene id symbol gene type direction distance location
LOC118940319 LOC106564328 coding downstream 80333 15132799 ~ 15237418 (-)
LOC118940326 LOC106591409 coding downstream 138504 15176941 ~ 15179247 (-)
LOC118940325 LOC106598058 coding downstream 175937 15139726 ~ 15141814 (-)
LOC118940091 LOC106591560 coding downstream 186317 15081145 ~ 15131434 (-)
LOC118940321 LOC106598058 coding downstream 204878 15101681 ~ 15112873 (-)
LOC118940327 NA coding upstream 26076 15373361 ~ 15375117 (-)
LOC118936458 LOC106591490 coding upstream 97195 15444480 ~ 15468256 (-)
LOC118940331 NA coding upstream 267579 15614864 ~ 15626817 (-)
LOC110485613 LOC106591333 coding upstream 280263 15627128 ~ 15704265 (-)
LOC110487262 hoga1 coding upstream 396930 15744215 ~ 15760194 (-)
G1422999 NA non-coding downstream 7185 15251787 ~ 15310566 (-)
G1422903 NA non-coding downstream 42536 15211054 ~ 15275215 (-)
G1422951 NA non-coding downstream 79573 15027545 ~ 15238178 (-)
G1422993 NA non-coding downstream 84063 15232652 ~ 15233688 (-)
G1423025 NA non-coding upstream 7247 15354532 ~ 15356435 (-)
G1423032 NA non-coding upstream 30054 15377339 ~ 15426302 (-)
G1423038 LOC106591342 non-coding upstream 50883 15398168 ~ 15398588 (-)
G1423053 NA non-coding upstream 124540 15471825 ~ 15472041 (-)
G1423060 LOC105021375 non-coding upstream 135857 15483142 ~ 15483477 (-)
LOC118940320 LOC106605908 other downstream 70409 15003526 ~ 15247342 (-)
G1422796 NA other downstream 549113 14765531 ~ 14768638 (-)
G1422757 NA other downstream 725157 14591466 ~ 14592594 (-)
LOC110485498 LOC106592261 other downstream 973913 14293700 ~ 14343967 (-)
LOC110485493 LOC106592221 other downstream 1028738 14275862 ~ 14289159 (-)
G1422918 NA other upstream 35834 15383119 ~ 15405174 (-)
G1422920 LOC106591235 other upstream 50005 15397290 ~ 15413597 (-)
G1423112 NA other upstream 236410 15583695 ~ 15584093 (-)
G1423836 NA other upstream 461401 15808686 ~ 15831010 (-)
G1423891 NA other upstream 637988 15985273 ~ 15986842 (-)

Expression


Co-expression Network