LOC110485498 (LOC106592261)


Basic Information

Item Value
gene id LOC110485498
gene name LOC106592261
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 14293700 ~ 14343967 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036948147.1
CCTACGTCGCGCCCGCCCGGGTGTGTGTGCTGCTGACTGCGGGCGCAGCGACATCATGCCGTTGGAGCGCTAGACACGCCGTTTTAAAGGGCTAGCCTCACTGTGCTGtgccgttctctctctctctctccctccctgcctgctgtgTGCTGCTGATTCATCACGATTAGGTGGTTAgccagcctgcctgccagccaTAGGCTACATGCACAAGCCATGCCAACCAGATTGAGTGGGGGCTTTCACAGCTAAAGTAGACAAAGAAAAGGCTTGCTTGTCAAACGTAAGCTAGGCTATAGCATCGCACTACAGTGCAGAGAGAACAACATGTGTGGCGGTTGGGAATATTTCTGATAACTTCATGCGAGATAGATTGATCATATCGAGAGTTACGGGGGGACTGGGAATCCCCCCCGGTTTTCAGAAATCAGACATCGTTAATCGGTTTACATAGAGTAGCCTAGCTAGATAAGGAAGAGGAAGATATATCGTGTATTCGGGATGTGTAGCCGAGTTGGAACTGTCTAGAAAACGTGATTATAGGTTAGGTGGCTGGAGATATTCACAGCAGAAGAACTGTCCGAGTATTCGAGTGCTGAAACGGAAGCAAGCGGAGCGGAGCGGAAAACGGGCCGCACTGGATAGGGACGCAACAACCGCGAGCGCGGTcagcgtgtgtctgtctgttgctaTTTCAGAGGTGTGTTCAGAGGGGGCTGGTTCTCGTGGCATGTCGACCACTAATAAGGGAAACAAGGCCTTGAAGgtGAAGAGGGAGCCGGGGGAGAATGGGACCACCCTGACAGATGATGAGCTGGTGACTATGTCTGTCCGGGAGCTCAACCAGCACCTCCGCGGCCTCACCAAGGATGAGATCCTGCAGCTTAAACAGCGCCGGCGCACCCTGAAGAACCGTGGCTACGCCGCCAGCTGCCGGGTCAAACGGGTCACCCAGAAGGAGGAGCTGGAGAAGCAGAAGTCACAGCTTCAACAGGAAGTGGATAAGTTGGCGTCGGAGAACGCCAGCATGAGGGCGGAGCTCGATCACCTGAGGTCGAAGTACGAGGCGCTACAGAGTTTTGCAAGGACTGTGGCGAGGAGCCCGGGAGTGGGGTTAGGGGTCGGGGGtcagaggggaggtggtggggtcGGGTCGGTGATCGGGCCACTCATACCGGGGAAAGTGGCGGCGACGAGTGTCATCACGATAGTGAAGTCGAAAACGGACGCGCGGTCTTAGTAGCGGGCTGGGtcaaggagggatgagagggaaaagggagggaagggagaggaggagaagaagctaATTAGGACTATTTAAAAATGAAACCATTGGTCAGTGCATCGTCATTGAGCACAGGACAGAATTTAATCAGGTGAGGTGGCCCCCCTTTGAGAAAATATCACACCCTGGATAGTAATTATTGTGTTTCTACTGTTATTTTGTAACTGTTGTACACGAGGTCCAAAGTTGTAATTTTTATGTAATGTAGTTATGCGTGTGTTGTGTCATGGAATACTGTGAACTTCATCTGTGGCCGACTTTCGTTTTGGTATCATTCTATTTGGCTGTGATTTCTCTGAAAACAACTATTTGTTTCCCAACGGGCTTCCGTAGTCACAGGCACTTCCTTGTTTTGCAGAAACAGCTTGCAGAGCCGTcaatttatttcatattttatcaTAAAAATGACAGAGAATTGTATTTTGTAACCGCTCATTGCACAAGAGAGACAAGATACTTTCAGAAAAGTGAGGGTCTTCAGGAAGAGGTTGTTTTGGTTATTTTGGTACTTTtcacccttttttctccccaattggaaggtacagtcttgtcccatcgctgaaactcccgtacggacttgggagaggcgaaggtcgagagccatgcgtcctccgaaacatgaccctgccaagaaccagaagccagccacaccaatgtgtctgaggaaacacagtacaactgccgaccgaagtcagcctgcaggcgcccggcccaccacaaggagtcgctagagcacgatgggccACCTGTGCGCCCTTGGTCTGTAATgatgccactcgggaggcctaaaGAGGTTGTGTTTTATCACAGGTACCTGTGTGTTCACCTGTGCTTAATGTTATGCACTGACCAATTATCACCATATTACCAATCTCCATACAGACCAGAGGGGTCTAGGCGTCTAATCGCCAAGTGTTGtcctgttcctgtctgtctgggactTGTGTACTATACTGTAGAATTAGCTATCGGGATTACATTGACTGACACGTGTTTATGTGACTAGGCAATTACTCCATTCAAAAACGAACTGAAAAATCAACATTTTAGtcaaaaatgtatagaattgaaATATAGTAAATTTGAATGTTTTTCTAATTTATTGTTAGAtttgattttgttttgtttttttggaaTGG
>XM_036948146.1
TCCTACGTCGCGCCCGCCCGGGTGTGTGTGCTGCTGACTGCGGGCGCAGCGACATCATGCCGTTGGAGCGCTAGACACGCCGTTTTAAAGGGCTAGCCTCACTGTGCTGtgccgttctctctctctctctccctccctgcctgctgtgTGCTGCTGATTCATCACGATTAGGTGGTTAgccagcctgcctgccagccaTAGGCTACATGCACAAGCCATGCCAACCAGATTGAGTGGGGGCTTTCACAGCTAAAGTAGACAAAGAAAAGGCTTGCTTGTCAAACGTAAGCTAGGCTATAGCATCGCACTACAGTGCAGAGAGAACAACATGTGTGGCGGTTGGGAATATTTCTGATAACTTCATGCGAGATAGATTGATCATATCGAGAGTTACGGGGGGACTGGGAATCCCCCCCGGTTTTCAGAAATCAGACATCGTTAATCGGTTTACATAGAGTAGCCTAGCTAGATAAGGAAGAGGAAGATATATCGTGTATTCGGGATGTGTAGCCGAGTTGGAACTGTCTAGAAAACGTGATTATAGGTTAGGTGGCTGGAGATATTCACAGCAGAAGAACTGTCCGAGTATTCGAGTGCTGAAACGGAAGCAAGCGGAGCGGAGCGGAAAACGGGCCGCACTGGATAGGGACGCAACAACCGCGAGCGCGGTcagcgtgtgtctgtctgttgctaTTTCAGAGgaaggagagatggagggtcgAGAGATGGGATTAAAAAACGAGTGGAGTTCTGAGGTGTGTTCAGAGGGGGCTGGTTCTCGTGGCATGTCGACCACTAATAAGGGAAACAAGGCCTTGAAGgtGAAGAGGGAGCCGGGGGAGAATGGGACCACCCTGACAGATGATGAGCTGGTGACTATGTCTGTCCGGGAGCTCAACCAGCACCTCCGCGGCCTCACCAAGGATGAGATCCTGCAGCTTAAACAGCGCCGGCGCACCCTGAAGAACCGTGGCTACGCCGCCAGCTGCCGGGTCAAACGGGTCACCCAGAAGGAGGAGCTGGAGAAGCAGAAGTCACAGCTTCAACAGGAAGTGGATAAGTTGGCGTCGGAGAACGCCAGCATGAGGGCGGAGCTCGATCACCTGAGGTCGAAGTACGAGGCGCTACAGAGTTTTGCAAGGACTGTGGCGAGGAGCCCGGGAGTGGGGTTAGGGGTCGGGGGtcagaggggaggtggtggggtcGGGTCGGTGATCGGGCCACTCATACCGGGGAAAGTGGCGGCGACGAGTGTCATCACGATAGTGAAGTCGAAAACGGACGCGCGGTCTTAGTAGCGGGCTGGGtcaaggagggatgagagggaaaagggagggaagggagaggaggagaagaagctaATTAGGACTATTTAAAAATGAAACCATTGGTCAGTGCATCGTCATTGAGCACAGGACAGAATTTAATCAGGTGAGGTGGCCCCCCTTTGAGAAAATATCACACCCTGGATAGTAATTATTGTGTTTCTACTGTTATTTTGTAACTGTTGTACACGAGGTCCAAAGTTGTAATTTTTATGTAATGTAGTTATGCGTGTGTTGTGTCATGGAATACTGTGAACTTCATCTGTGGCCGACTTTCGTTTTGGTATCATTCTATTTGGCTGTGATTTCTCTGAAAACAACTATTTGTTTCCCAACGGGCTTCCGTAGTCACAGGCACTTCCTTGTTTTGCAGAAACAGCTTGCAGAGCCGTcaatttatttcatattttatcaTAAAAATGACAGAGAATTGTATTTTGTAACCGCTCATTGCACAAGAGAGACAAGATACTTTCAGAAAAGTGAGGGTCTTCAGGAAGAGGTTGTTTTGGTTATTTTGGTACTTTtcacccttttttctccccaattggaaggtacagtcttgtcccatcgctgaaactcccgtacggacttgggagaggcgaaggtcgagagccatgcgtcctccgaaacatgaccctgccaagaaccagaagccagccacaccaatgtgtctgaggaaacacagtacaactgccgaccgaagtcagcctgcaggcgcccggcccaccacaaggagtcgctagagcacgatgggccACCTGTGCGCCCTTGGTCTGTAATgatgccactcgggaggcctaaaGAGGTTGTGTTTTATCACAGGTACCTGTGTGTTCACCTGTGCTTAATGTTATGCACTGACCAATTATCACCATATTACCAATCTCCATACAGACCAGAGGGGTCTAGGCGTCTAATCGCCAAGTGTTGtcctgttcctgtctgtctgggactTGTGTACTATACTGTAGAATTAGCTATCGGGATTACATTGACTGACACGTGTTTATGTGACTAGGCAATTACTCCATTCAAAAACGAACTGAAAAATCAACATTTTAGtcaaaaatgtatagaattgaaATATAGTAAATTTGAATGTTTTTCTAATTTATTGTTAGAtttgattttgttttgtttttttggaaTGG
>TU1627955
ctgcctgccagccaTAGGCTACATGCACAAGCCATGCCAACCAGATTGAGTGGGGGCTTTCACAGCTAAAGTAGACAAAGAAAAGGCTTGCTTGTCAAACGTAAGCTAGGCTATAGCATCGCACTACAGTGCAGAGAGAACAACATGTGTGGCGGTTGGGAATATTTCTGATAACTTCATGCGAGATAGATTGATCATATCGAGAGTTACGGGGGGACTGGGAATCCCCCCCGGTTTTCAGAAATCAGACATCGTTAATCGGTTTACATAGAGTAGCCTAGCTAGATAAGGAAGAGGAAGATATATCGTGTATTCGGGATGTGTAGCCGAGTTGGAACTGTCTAGAAAACGTGATTATAGGTTAGGTGGCTGGAGATATTCACAGCAGAAGAACTGTCCGAGTATTCGAGTGCTGAAACGGAAGCAAGCGGAGCGGAGCGGAAAACGGGCCGCACTGGATAGGGACGCAACAACCGCGAGCGCGGTcagcgtgtgtctgtctgttgctaTTTCAGAGgaaggagagatggagggtcgAGAGATGGGATTAAAAAACGAGTGGAGTTCTGAGGTGTGTTCAGAGGGGGCTGGTTCTCGTGGCATGTCGACCACTAATAAGGGAAACAAGGCCTTGAAGgtGAAGAGGGAGCCGGGGGAGAATGGGACCACCCTGACAGATGATGAGCTGGTGACTATGTCTGTCCGGGAGCTCAACCAGCACCTCCGCGGCCTCACCAAGGATGAGATCCTGCAGCTTAAACAGCGCCGGCGCACCCTGAAGAACCGTGGCTACGCCGCCAGCTGCCGGGTCAAACGGGTCACCCAGAAGGAGGAGCTGGAGAAGCAGAAGTCACAGCTTCAACAGGAAGTGGATAAGTTGGCGTCGGAGAACGCCAGCATGAGGGCGGAGCTCGATCACCTGAGGTCGAAGTACGAGGCGCTACAGAGTTTTGCAAGGACTGTGGCGAGGAGCCCGG
>TU1627958
tccctccctgcctgctgtgTGCTGCTGATTCATCACGATTAGGTGGTTAgccagcctgcctgccagccaTAGGCTACATGCACAAGCCATGCCAACCAGATTGAGTGGGGGCTTTCACAGCTAAAGTAGACAAAGAAAAGGCTTGCTTGTCAAACGTAAGCTAGGCTATAGCATCGCACTACAGTGCAGAGAGAACAACATGTGTGGCGGTTGGGAATATTTCTGATAACTTCATGCGAGATAGATTGATCATATCGAGAGTTACGGGGGGACTGGGAATCCCCCCCGGTTTTCAGAAATCAGACATCGTTAATCGGTTTACATAGAGTAGCCTAGCTAGATAAGGAAGAGGAAGATATATCGTGTATTCGGGATGTGTAGCCGAGTTGGAACTGTCTAGAAAACGTGATTATAGGTTAGGTGGCTGGAGATATTCACAGCAGAAGAACTGTCCGAGTATTCGAGTGCTGAAACGGAAGCAAGCGGAGCGGAGCGGAAAACGGGCCGCACTGGATAGGGACGCAACAACCGCGAGCGCGGTcagcgtgtgtctgtctgttgctaTTTCAGAGGTGTGTTCAGAGGGGGCTGGTTCTCGTGGCATGTCGACCACTAATAAGGGAAACAAGGCCTTGAAGgtGAAGAGGGAGCCGGGGGAGAATGGGACCACCCTGACAGATGATGAGCTGGTGACTATGTCTGTCCGGGAGCTCAACCAGCACCTCCGCGGCCTCACCAAGGATGAGATCCTGCAGCTTAAACAGCGCCGGCGCACCCTGAAGAACCGTGGCTACGCCGCCAGCTGCCGGGTCAAACGGGTCACCCAGAAGGAGGAGCTGGAGAAGCAGAAGTCACAGCTTCAACAGGAAGTGGATAAGTTGGCGTCGGAGAACGCCAGCATGAGGGCGGAGCTCGATCACCTGAGGTCGAAGTACGAGGCGCTACAGAGTTTTGCAAGGACTGTGGCGAGGAGCCCGG
>TU1627959
ctgcctgccagccaTAGGCTACATGCACAAGCCATGCCAACCAGATTGAGTGGGGGCTTTCACAGCTAAAGTAGACAAAGAAAAGGCTTGCTTGTCAAACGTAAGCTAGGCTATAGCATCGCACTACAGTGCAGAGAGAACAACATGTGTGGCGGTTGGGAATATTTCTGATAACTTCATGCGAGATAGATTGATCATATCGAGAGTTACGGGGGGACTGGGAATCCCCCCCGGTTTTCAGAAATCAGACATCGTTAATCGGTTTACATAGAGTAGCCTAGCTAGATAAGGAAGAGGAAGATATATCGTGTATTCGGGATGTGTAGCCGAGTTGGAACTGTCTAGAAAACGTGATTATAGGTTAGGTGGCTGGAGATATTCACAGCAGAAGAACTGTCCGAGTATTCGAGTGCTGAAACGGAAGCAAGCGGAGCGGAGCGGAAAACGGGCCGCACTGGATAGGGACGCAACAACCGCGAGCGCGGTcagcgtgtgtctgtctgttgctaTTTCAGAGGTGTGTTCAGAGGGGGCTGGTTCTCGTGGCATGTCGACCACTAATAAGGGAAACAAGGCCTTGAAGgtGAAGAGGGAGCCGGGGGAGAATGGGACCACCCTGACAGATGATGAGCTGGTGACTATGTCTGTCCGGGAGCTCAACCAGCACCTCCGCGGCCTCACCAAGGATGAGATCCTGCAGCTTAAACAGCGCCGGCGCACCCTGAAGAACCGTGGCTACGCCGCCAGCTGCCGGGTCAAACGGGTCACCCAGAAGGAGGAGCTGGAGAAGCAGAAGTCACAGCTTCAACAGGAAGTGGATAAGTTGGCGTCGGAGAACGCCAGCATGAGGGCGGAGCTCGATCACCTGAGGTCGAAGTACGAGGCGCTACAGAGTTTTGCAAGGACTGTGGCGAGGAGCCCGG
>TU1627960
ATAGATTGATCATATCGAGAGTTACGGGGGGACTGGGAATCCCCCCCGGTTTTCAGAAATCAGACATCGTTAATCGGTTTACATAGAGTAGCCTAGCTAGATAAGGAAGAGGAAGATATATCGTGTATTCGGGATGTGTAGCCGAGTTGGAACTGTCTAGAAAACGTGATTATAGGTTAGGTGGCTGGAGATATTCACAGCAGAAGAACTGTCCGAGTATTCGAGTGCTGAAACGGAAGCAAGCGGAGCGGAGCGGAAAACGGGCCGCACTGGATAGGGACGCAACAACCGCGAGCGCGGTcagcgtgtgtctgtctgttgctaTTTCAGAGGTGTGTTCAGAGGGGGCTGGTTCTCGTGGCATGTCGACCACTAATAAGGGAAACAAGGCCTTGAAGgtGAAGAGGGAGCCGGGGGAGAATGGGACCACCCTGACAGATGATGAGCTGGTGACTATGTCTGTCCGGGAGCTCAACCAGCACCTCCGCGGCCTCACCAAGGATGAGATCCTGCAGCTTAAACAGCGCCGGCGCACCCTGAAGAACCGTGGCTACGCCGCCAGCTGCCGGGTCAAACGGGTCACCCAGAAGGAGGAGCTGGAGAAGCAGAAGTCACAGCTTCAACAGGAAGTGGATAAGTTGGCGTCGGAGAACGCCAGCATGAGGGCGGAGCTCGATCACCTGAGGTCGAAGTACGAGGCGCTACAGAGTTTTGCAAGGACTGTGGCGAGGAGCCCGG

Function

NR:

description
transcription factor MafG-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036948147.1 False 2424 mRNA 0.49 3 14293700 14343966
XM_036948146.1 False 2479 mRNA 0.49 4 14293700 14343967
TU1627955 False 977 TUCP 0.53 4 14295018 14343783
TU1627958 False 978 TUCP 0.54 3 14295018 14343838
TU1627959 False 923 TUCP 0.54 3 14295018 14343783
TU1627960 True 738 TUCP 0.55 3 14295018 14343598

Neighbor

gene id symbol gene type direction distance location
LOC110485493 LOC106592221 coding downstream 4541 14275862 ~ 14289159 (-)
LOC110487229 LOC106591833 coding downstream 18505 14270156 ~ 14275195 (-)
LOC118940023 pcy2 coding downstream 46252 14230921 ~ 14247448 (-)
gnav1 LOC106591843 coding downstream 63887 14191093 ~ 14229813 (-)
LOC110485491 LOC106564342 coding downstream 119971 14158383 ~ 14173729 (-)
LOC110495053 LOC106564349 coding upstream 3392 14323005 ~ 14371087 (-)
LOC110493419 LOC106564347 coding upstream 35322 14379289 ~ 14382571 (-)
LOC110485503 LOC106593098 coding upstream 115371 14459338 ~ 14506937 (-)
tk1 kith coding upstream 234404 14578371 ~ 14583460 (-)
ogal LOC106564358 coding upstream 283760 14627727 ~ 14647511 (-)
G1422275 NA non-coding downstream 18007 14275420 ~ 14275693 (-)
G1422265 NA non-coding downstream 23637 14269448 ~ 14270063 (-)
G1422266 NA non-coding downstream 24741 14268685 ~ 14268959 (-)
G1422257 NA non-coding downstream 26279 14266839 ~ 14267421 (-)
G1422293 NA non-coding upstream 2635 14346602 ~ 14346891 (-)
G1422294 NA non-coding upstream 15393 14359360 ~ 14359744 (-)
G1422710 NA non-coding upstream 43726 14387693 ~ 14390580 (-)
G1422716 LOC106564348 non-coding upstream 68584 14412551 ~ 14424933 (-)
LOC110485459 LOC106564320 other downstream 328363 13959793 ~ 13997078 (-)
LOC118940029 exosc1 other downstream 425029 13863439 ~ 13868827 (-)
G1422125 LOC106595916 other downstream 435450 13856876 ~ 13858250 (-)
LOC118940035 NA other downstream 512660 13772139 ~ 13781710 (-)
G1422757 NA other upstream 247499 14591466 ~ 14592594 (-)
G1422796 NA other upstream 421564 14765531 ~ 14768638 (-)
G1422891 LOC106601621 other upstream 582398 14907317 ~ 15353090 (-)
LOC118940320 LOC106605908 other upstream 662872 15003526 ~ 15247342 (-)
G1422897 NA other upstream 989911 15333878 ~ 15334891 (-)

Expression


Co-expression Network