LOC118940035


Basic Information

Item Value
gene id LOC118940035
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 13772139 ~ 13781710 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005036669.1
GGGACGTTCCATTATAAGGGGAGTGGCCAGCTCCAAGGCAAGTCTGCAAACCGTCAAGTTTTACATTTCTACAATAATGATAACGTTAAATATAAGCATTATTTCATCAACAGTATACAATATCAATGTATAACTGTACTTCGCTATTTTAAACTCGTCAAAGGGAAAAAGAGTTCCACCGGGGTGAAGAGACGGTGGGCATTTCCCAACGCCCTTCCGGAACCGTATTTTAACCCTGGGATTCAGGTCGGACCTCCTTTATCAGCACACCGTGGCACCCATCACTGCTGAGGAATAGACGTAAACAAGACATTACTTTGAACTGTGACTATTTACTTGAGAATGATAATGGTTAAATTATAACAATGACTGTTACCACGTAAACTATGAGGCGTGCACGCAACATATAAAACAATGATAGCAAATGTCAAACTGTATTTCTGCAATACAGTTACGTATGGGATATAAGAAACAAAAGCTGTGTGTCGCGTCGTCATTTATATTATGTTTATAGTGCAAATTGAGTAATAACGTGCATAAAATTAAAAGGATATTTGTTATGGCCTGTGTACACTTGCACGCGGTAAACTACCGCGTGGCTAGCTTGTGGGCATGCTGGCTGCAGCAGTTCTGTTGTGCAACAAAGATCTGGTTATTAAATGGGTAAATAGTTCAATCTATTCTCCATTAACAGTTAAGTAGTGTGCTCTAACCCGCTCTGGTGACAAACGTCGCTGCCCTGTTTCCAATCGTCCACATTGCTGCTGGGAGAAtctattcaaatacagagctgtgaaaccctgtctgcagatgaagagCAATGGTTCCCAGTCCTGTTCCTGGGGTCTCAAAGGGATGCCTTGCAACTGGAGATTTCTTAAACGATTGCCTACAGTTACTGTGTAGGGCACGGCACAGTTGGGTGACCAGGGCCATCTGGGACTGTCTCGTGGGGGATTTCCGGCATCTGTGAAGGCTACCTGTGTCCTGCATAACTTCATGATGATGAACAGGAGGGGACCTGCAGCGCTCCGCCATGTGCCAGAGGAGAGGTCTGCTGCTCTGCAGGATGTTGCCAGGATGGGGGCCAACAACGCAGCACAGGAGGCAATCTGTGTGCAGGAGACCTTCACCTCCTACTTCTTCACAAAGGAtgctgttccctggcaacaccatagactacactatgcacaatcaaaggctcttttaagagccatccacattgcaataagagtattcttcaatttacttagctatgtcaactgcagttattCAATTTCCAGTTTCTCTTCCTTTAATTTCTACTTCGCAGGTGAGGGTGCTGTTTAGGTAGGAGTGGTgtctgtacaaaaacaaaacaggctCTCACCCATTTTGAAAACATTTAGAACAATTAGACACCCTATAAGCCACACCTACACACGTGTCTATTGCTATAAAGAATAGTTAACACACCTCACACAGGCCTTTTTTCAGGTGAATACGTTTTAGAAAAAAATATTGGTGTGTGTTTCTGGAAAAAAAGGCCACTATTGTCTCAAAAGTCCGTTATTATTAACTTTTAAAACAATTGTTAATCAATAAAAGGGGCAATCCGCAGTTAATATAACTtgtgcttagttcaactgttgtaccccatcagaacccaaaatataagcttgttttgctCCAATGTTGTAAATGTAAACATACACTGTATAGCCCAAAACATGGATGAAGCTATGACGTTGGATGGTCAGTCATTGCATGCACAGCTCTGTCTTAGAGCGGTTACACTTCTCCAGACAAATCCCACAGCTTTTTACAAAAACAGAGGCAGGGTTCAGCTTTTTTATTGTTTCAACTGTGGACTGTCCCTTTAAAAAACCCAACAACCAATCAATACCAACGTCAATACAAATAGAATCCTACTTTGTCTAACATGAAGATTCACAGAATGAAAGAAAACATATATTACAATCAGTGTAAAAAGTCTGCTAGAAGTGGCCTTCGCTTGTTACACACGGACACTAGTCAATGTTAAGCTGGTCTTCCAGTAGTCATTTCAGCCATAGTCAGACTATTGTTCACAAGCGTGTG
>XR_005036670.1
AGAACGTACATAAACCAAAAATCAACTCGCTGATGGGACGTTCCATTATAAGGGGAGTGGCCAGCTCCAAGGCAAGTCTGCAAACCGTCAAGTTTTACATTTCTACAATAATGATAACGTTAAATATAAGCATTATTTCATCAACAGTATACAATATCAATGTATAACTGTACTTCGCTATTTTAAACTCGTCAAAGGGAAAAAGAGTTCCACCGGGGTGAAGAGACGGTGGGCATTTCCCAACGCCCTTCCGGAACCGTATTTTAACCCTGGGATTCAGGTCGGACCTCCTTTATCAGCACACCGTGGCACCCATCACTGCTGAGGAATAGACTTAAGTAGTGTGCTCTAACCCGCTCTGGTGACAAACGTCGCTGCCCTGTTTCCAATCGTCCACATTGCTGCTGGGAGAAtctattcaaatacagagctgtgaaaccctgtctgcagatgaagagCAATGGTTCCCAGTCCTGTTCCTGGGGTCTCAAAGGGATGCCTTGCAACTGGAGATTTCTTAAACGATTGCCTACAGTTACTGTGTAGGGCACGGCACAGTTGGGTGACCAGGGCCATCTGGGACTGTCTCGTGGGGGATTTCCGGCATCTGTGAAGGCTACCTGTGTCCTGCATAACTTCATGATGATGAACAGGAGGGGACCTGCAGCGCTCCGCCATGTGCCAGAGGAGAGGTCTGCTGCTCTGCAGGATGTTGCCAGGATGGGGGCCAACAACGCAGCACAGGAGGCAATCTGTGTGCAGGAGACCTTCACCTCCTACTTCTTCACAAAGGAtgctgttccctggcaacaccatagactacactatgcacaatcaaaggctcttttaagagccatccacattgcaataagagtattcttcaatttacttagctatgtcaactgcagttattCAATTTCCAGTTTCTCTTCCTTTAATTTCTACTTCGCAGGTGAGGGTGCTGTTTAGGTAGGAGTGGTgtctgtacaaaaacaaaacaggctCTCACCCATTTTGAAAACATTTAGAACAATTAGACACCCTATAAGCCACACCTACACACGTGTCTATTGCTATAAAGAATAGTTAACACACCTCACACAGGCCTTTTTTCAGGTGAATACGTTTTAGAAAAAAATATTGGTGTGTGTTTCTGGAAAAAAAGGCCACTATTGTCTCAAAAGTCCGTTATTATTAACTTTTAAAACAATTGTTAATCAATAAAAGGGGCAATCCGCAGTTAATATAACTtgtgcttagttcaactgttgtaccccatcagaacccaaaatataagcttgttttgctCCAATGTTGTAAATGTAAACATACACTGTATAGCCCAAAACATGGATGAAGCTATGACGTTGGATGGTCAGTCATTGCATGCACAGCTCTGTCTTAGAGCGGTTACACTTCTCCAGACAAATCCCACAGCTTTTTACAAAAACAGAGGCAGGGTTCAGCTTTTTTATTGTTTCAACTGTGGACTGTCCCTTTAAAAAACCCAACAACCAATCAATACCAACGTCAATACAAATAGAATCCTACTTTGTCTAACATGAAGATTCACAGAATGAAAGAAAACATATATTACAATCAGTGTAAAAAGTCTGCTAGAAGTGGCCTTCGCTTGTTACACACGGACACTAGTCAATGTTAAGCTGGTCTTCCAGTAGTCATTTCAGCCATAGTCAGACTATTGTTCACAAGCGTGTG
>TU1627681
TGCAACAAAGATCTGGTTATTAAATGGGTAAATAGTTCAATCTATTCTCCATTAACAGTTAAGTAGTGTGCTCTAACCCGCTCTGGTGACAAACGTCGCTGCCCTGTTTCCAATCGTCCACATTGCTGCTGGGAGAAtctattcaaatacagagctgtgaaaccctgtctgcagatgaagagCAATGGTTCCCAGTCCTGTTCCTGGGGTCTCAAAGGGATGCCTTGCAACTGGAGATTTCTTAAACGATTGCCTACAGTTACTGTGTAGGGCACGGCACAGTTGGGTGACCAGGGCCATCTGGGACTGTCTCGTGGGGGATTTCCGGCATCTGTGAAGGCTACCTGTGTCCTGCATAACTTCATGATGATGAACAGGAGGGGACCTGCAGCGCTCCGCCATGTGCCAGAGGAGAGGTCTGCTGCTCTGCAGGATGTTGCCAGGATGGGGGCCAACAACGCAGCACAGGAGGCAATCTGTGTGCAGGAGACCTTCACCTCCTACTTCTTCACAAAGGAtgctgttccctggcaacaccatagactacactatgcacaatcaaaggctcttttaagagccatccacattgcaataagagtattcttcaatttacttagctatgtcaactgcagttattCAATTTCCAGTTTCTCTTCCTTTAATTTCTACTTCGCAGGTGAGGGTGCTGTTTAGGTAGGAGTGGTgtctgtacaaaaacaaaacaggctCTCACCCATTTTGAAAACATTTAGAACAATTAGACACCCTATAAGCCACACCTACACACGTGTCTATTGCTATAAAGAATAGTTAACACACCTCACACAGGCCTTTTTTCAGGTGAATACGTTTTAGAAAAAAATATTGGTGTGTGTTTCTGGAAAAAAAGGCCAAGAGCATGGCCAGCAtctagagagagaagggattcagtgtgtgtatccatctctacagtgtatgtgtgtttgagagaaAAAATAATGTTTGCCACATGTCTGCATatggtgtgtgtgcttgtataaCTCACATGAAGCAGCAGAGGACTCCAAAGATGAGCCAGGTGACCAGTCCAGGGGTGTGTGTGGTCTCTGTCAGAACCTGGACCTGACAGTAGGGACACATCATCTGGCCGGGTACGTCTCTTAGCAGCGGCTGCTGTATCACCACCACctgggttactgtagagagaggagaatacTGGTTAGAACCACCACCTGGGTTATTGCAGAGGGAGGAGAATACTGGTTAGAACCAGATAGAACTGGTCAGAACAGGATATAACTTCATAGAATTGGACAGGACTAGAAAGAATCCCCACCACCCGGGTTACTGCAGAGGGAGGAGAATACTGGTTAGAACCagatagaacaggacagaaccacCACCCGGGTTACTGCAGAGGGAGGAGAATACTGGTTAGAACTGGATAGAACTCAATAGAATGGGATAGACGGGATAGaactggacagaacagaacagaaccaattagaaccCCCAAAAATGGGGTTCTTTGTTCTATATTTCCCGCCCCCACAGAGGGTAGAGGATTAGAAGGGTTGCTAAGGATGGGTGTTGCTATGGCCAGGATATCCAGCCAATACCTTGTGTGACTACTATTTGGTTCTCGTTTTCCACGGTGTACTGTGA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005036669.1 False 2079 mRNA 0.42 3 13773193 13781676
XR_005036670.1 False 1719 mRNA 0.43 4 13773193 13781710
TU1627681 True 1644 TUCP 0.47 4 13772139 13781040

Neighbor

gene id symbol gene type direction distance location
LOC118940086 NA coding downstream 11366 13759810 ~ 13761827 (-)
LOC110493414 NA coding downstream 13557 13755525 ~ 13759636 (-)
tekt4 LOC106564280 coding downstream 25782 13738062 ~ 13747411 (-)
LOC110485508 LOC106564355 coding downstream 128630 13628154 ~ 13644563 (-)
LOC110493422 LOC106564358 coding downstream 145454 13607347 ~ 13627739 (-)
LOC118940087 NA coding upstream 174 13749974 ~ 13801809 (-)
LOC118940037 NA coding upstream 8189 13789899 ~ 13799364 (-)
LOC118940029 exosc1 coding upstream 81729 13863439 ~ 13868827 (-)
LOC118940026 LOC106564313 coding upstream 87563 13869273 ~ 13872206 (-)
LOC110485450 LOC106564311 coding upstream 90738 13872448 ~ 13879257 (-)
G1422064 NA non-coding downstream 54840 13716446 ~ 13718353 (-)
G1422057 NA non-coding downstream 69001 13703267 ~ 13704192 (-)
G1422055 NA non-coding downstream 74081 13698302 ~ 13699112 (-)
G1422041 NA non-coding downstream 91136 13680948 ~ 13682057 (-)
G1422083 NA non-coding upstream 29265 13810975 ~ 13837989 (-)
G1422103 NA non-coding upstream 34850 13816560 ~ 13818214 (-)
G1422125 LOC106595916 non-coding upstream 75166 13856876 ~ 13858250 (-)
G1422112 NA non-coding upstream 79452 13861162 ~ 13861493 (-)
G1422108 NA non-coding upstream 80483 13862193 ~ 13862601 (-)
G1422007 NA other downstream 191628 13580940 ~ 13581565 (-)
LOC110485496 LOC106592261 other downstream 433614 13303807 ~ 13339705 (-)
LOC110485492 LOC106592221 other downstream 472775 13286956 ~ 13300529 (-)
LOC110485494 LOC106591833 other downstream 487690 13280562 ~ 13286294 (-)
LOC110485459 LOC106564320 other upstream 180997 13959793 ~ 13997078 (-)
LOC110485493 LOC106592221 other upstream 494203 14275862 ~ 14289159 (-)
LOC110485498 LOC106592261 other upstream 513308 14293700 ~ 14343967 (-)

Expression


Co-expression Network