tekt4 (LOC106564280)


Basic Information

Item Value
gene id tekt4
gene name LOC106564280
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 13738062 ~ 13747411 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036948085.1
AGCGCAAATACAAAACATGTGATTCTTCACTTCCCCTGTGTGGCTCTTGTTTATGCTGCGACTCCGTTAACTACAATCCTGTGTCGGATCGCAGTGTTTTTAATATCAGGTATCACCAATTCGCCACAAAATGTCTTCAGAAGTTTTAGTGGCCAGACATAATTTCGACAGCAGGTCAGTTGCCCAAGCAGGCGAGCCGTTCCCGCCTCCAGACGCAGAGGCCACATTCAAGGAGGGCTTCTATCCCTCCTCCGGCTTGGCTACGGCGGGGTACCGCTCATCCAAGTACAGCCCGGAGGAATGGCACATCAATAACTTCTCTACCCTTCACCAGGCCGCTACTGACCGAAACAACGCCGAGAGGATTTGCCATGAGTCCAAAACACTATATCAAGAGACCGAGGCCGGGACTCTGCGCACCCAAGCTGAGGGGACGCGGCACCTGGGAGAGAGACTGCAGCATATCCACTTCTGGAAGTCGGAGCTGCAGCGGCACATAGAGAAGCTGGTGGCCGAGACAGACCTCCTCCTGGGGCAGAAGAGGAGGCTGTTGAAGGCGCTGGACGCCACCGAGATCCCGTTCGCCATCGCCACGGATAACCTAACCTGTCGGGAACGGCGGCTGGGTCCCGACCTGGTTAAAGACGGCGTAGAGGAGGAGCTGCTTAAGGAGGTGGAGTTGATCAGGAGCATCCAGGCTCTGTTGAAGAGAACGCTGAGTCAGGCTGTCAATCAAATCAAgtgtAACAGAGATGCCAAGCAGACTCTAGAGCTGGACTGGTCTGATAAGTACCAGGCCTACAGTCTGGATGACCAGTGTGGTCGCTACAACAACATGAGTACTGACACACAGTATCACCCCAACTCAGAGAACCTACAGGACCAgCTGTGTAACCGTGATGCGTGGGTgtctttcacccaggacaacctGTCTGTGGCTCAGCGGGAGGAGCAGGCCAGCGTGGAGCTCAGGCTGCTGGTGGAGAGGGTCCTACAGGAGACGGCTGAGGACCTGAGGGTCCAGTGCTCTAACGTAGACCAGGCCTTCAGCCAGCGCTGTCTGCAGCTCACTGAGGCCAAGACACAGCTACAACTGCACCTCACTCAGatcctgGATCAGATCGGGGCCCAGGAAAGGAACATTGTGTCTCTTCAGCAGGCTCTGTATGATAAAGAGGCCCCTCTGAGAGTGGCTCAGTCCCGGCTGCACCAACGCTCACACAGACCCCACATGGAGCTCTGTAGGGACAACCCACAattcagcctGGTGGGCGAGGCAGGTCAGATCTCCCAGACCATGTCATCCCTGCAGCAGCAGCTGTCTGCAGCGCGGAGCTCCCTGTCCCACCTGGAGGAGTCCCGCATGGTGCTGGAGAAGGACATCGGCTGTAAGACCCACAGCCTGCTCATCGACAGGGACAAGTGCATGTCCCACCGCACCCGCTACCCCACCATCATAGCCCTGTCTGggtactgaagagagagagacagggggatatggggacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgatcaagtCTGTATTAGTGACTAGTGCAACATTGTGTGCATTTGCTTGGTGTTTCCAGTTGTGTTGTGTCAATCAATAAAGGCTTGTCTGTCACAGCTGAA
>XM_021567669.2
GCAGCGCAAATACAAAACATGTGATTCTTCACTTCCCCTGTGTGGCTCTTGTTTATGCTGCGACTCCGTTAACTACAATCCTGTGTCGGATCGCAGTGTTTTTAATATCAGGTATCACCAATTCGCCACAAAATGTCTTCAGAAGTTTTAGTGGCCAGACATAATTTCGACAGCAGGTCAGTTGCCCAAGCAGGCGAGCCGTTCCCGCCTCCAGACGCAGAGGCCACATTCAAGGAGGGCTTCTATCCCTCCTCCGGCTTGGCTACGGCGGGGTACCGCTCATCCAAGTACAGCCCGGAGGAATGGCACATCAATAACTTCTCTACCCTTCACCAGGCCGCTACTGACCGAAACAACGCCGAGAGGATTTGCCATGAGTCCAAAACACTATATCAAGAGACCGAGGCCGGGACTCTGCGCACCCAAGCTGAGGGGACGCGGCACCTGGGAGAGAGACTGCAGCATATCCACTTCTGGAAGTCGGAGCTGCAGCGGCACATAGAGAAGCTGGTGGCCGAGACAGACCTCCTCCTGGGGCAGAAGAGGAGGCTGTTGAAGGCGCTGGACGCCACCGAGATCCCGTTCGCCATCGCCACGGATAACCTAACCTGTCGGGAACGGCGGCTGGGTCCCGACCTGGTTAAAGACGGCGTAGAGGAGGAGCTGCTTAAGGAGGTGGAGTTGATCAGGAGCATCCAGGCTCTGTTGAAGAGAACGCTGAGTCAGGCTGTCAATCAAATCAAgCTGTGTAACCGTGATGCGTGGGTgtctttcacccaggacaacctGTCTGTGGCTCAGCGGGAGGAGCAGGCCAGCGTGGAGCTCAGGCTGCTGGTGGAGAGGGTCCTACAGGAGACGGCTGAGGACCTGAGGGTCCAGTGCTCTAACGTAGACCAGGCCTTCAGCCAGCGCTGTCTGCAGCTCACTGAGGCCAAGACACAGCTACAACTGCACCTCACTCAGatcctgGATCAGATCGGGGCCCAGGAAAGGAACATTGTGTCTCTTCAGCAGGCTCTGTATGATAAAGAGGCCCCTCTGAGAGTGGCTCAGTCCCGGCTGCACCAACGCTCACACAGACCCCACATGGAGCTCTGTAGGGACAACCCACAattcagcctGGTGGGCGAGGCAGGTCAGATCTCCCAGACCATGTCATCCCTGCAGCAGCAGCTGTCTGCAGCGCGGAGCTCCCTGTCCCACCTGGAGGAGTCCCGCATGGTGCTGGAGAAGGACATCGGCTGTAAGACCCACAGCCTGCTCATCGACAGGGACAAGTGCATGTCCCACCGCACCCGCTACCCCACCATCATAGCCCTGTCTGggtactgaagagagagagacagggggatatggggacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgatcaagtCTGTATTAGTGACTAGTGCAACATTGTGTGCATTTGCTTGGTGTTTCCAGTTGTGTTGTGTCAATCAATAAAGGCTTGTCTGTCACAGCTGAA

Function

NR:

description
tektin-4-like isoform X2

GO: NA

KEGG:

id description
K18631 TEKT4; tektin-4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036948085.1 False 1674 mRNA 0.55 6 13738062 13747409
XM_021567669.2 True 1532 mRNA 0.56 5 13738062 13747411

Neighbor

gene id symbol gene type direction distance location
LOC110485508 LOC106564355 coding downstream 93499 13628154 ~ 13644563 (-)
LOC110493422 LOC106564358 coding downstream 110323 13607347 ~ 13627739 (-)
LOC118940028 kith coding downstream 161803 13572211 ~ 13576259 (-)
tmc6b LOC106593098 coding downstream 236851 13459621 ~ 13501211 (-)
LOC118940038 NA coding downstream 277339 13460182 ~ 13460723 (-)
LOC110493414 NA coding upstream 8114 13755525 ~ 13759636 (-)
LOC118940086 NA coding upstream 12399 13759810 ~ 13761827 (-)
LOC118940035 NA coding upstream 25782 13772139 ~ 13781710 (-)
LOC118940087 NA coding upstream 34473 13749974 ~ 13801809 (-)
LOC118940037 NA coding upstream 42488 13789899 ~ 13799364 (-)
G1422064 NA non-coding downstream 19709 13716446 ~ 13718353 (-)
G1422057 NA non-coding downstream 33870 13703267 ~ 13704192 (-)
G1422055 NA non-coding downstream 38950 13698302 ~ 13699112 (-)
G1422041 NA non-coding downstream 56005 13680948 ~ 13682057 (-)
G1422036 NA non-coding downstream 63261 13674280 ~ 13674801 (-)
G1422083 NA non-coding upstream 63564 13810975 ~ 13837989 (-)
G1422103 NA non-coding upstream 69149 13816560 ~ 13818214 (-)
G1422125 LOC106595916 non-coding upstream 109465 13856876 ~ 13858250 (-)
G1422007 NA other downstream 156497 13580940 ~ 13581565 (-)
LOC110485496 LOC106592261 other downstream 398483 13303807 ~ 13339705 (-)
LOC110485492 LOC106592221 other downstream 437644 13286956 ~ 13300529 (-)
LOC110485494 LOC106591833 other downstream 452559 13280562 ~ 13286294 (-)
LOC118940029 exosc1 other upstream 119009 13863439 ~ 13868827 (-)
LOC110485459 LOC106564320 other upstream 215296 13959793 ~ 13997078 (-)
LOC110485493 LOC106592221 other upstream 528502 14275862 ~ 14289159 (-)

Expression


Co-expression Network