RNA id: XM_036948085.1


Basic Information

Item Value
RNA id XM_036948085.1
length 1674
RNA type mRNA
GC content 0.55
exon number 6
gene id tekt4
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 13738062 ~ 13747411 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCGCAAATACAAAACATGTGATTCTTCACTTCCCCTGTGTGGCTCTTGTTTATGCTGCGACTCCGTTAACTACAATCCTGTGTCGGATCGCAGTGTTTTTAATATCAGGTATCACCAATTCGCCACAAAATGTCTTCAGAAGTTTTAGTGGCCAGACATAATTTCGACAGCAGGTCAGTTGCCCAAGCAGGCGAGCCGTTCCCGCCTCCAGACGCAGAGGCCACATTCAAGGAGGGCTTCTATCCCTCCTCCGGCTTGGCTACGGCGGGGTACCGCTCATCCAAGTACAGCCCGGAGGAATGGCACATCAATAACTTCTCTACCCTTCACCAGGCCGCTACTGACCGAAACAACGCCGAGAGGATTTGCCATGAGTCCAAAACACTATATCAAGAGACCGAGGCCGGGACTCTGCGCACCCAAGCTGAGGGGACGCGGCACCTGGGAGAGAGACTGCAGCATATCCACTTCTGGAAGTCGGAGCTGCAGCGGCACATAGAGAAGCTGGTGGCCGAGACAGACCTCCTCCTGGGGCAGAAGAGGAGGCTGTTGAAGGCGCTGGACGCCACCGAGATCCCGTTCGCCATCGCCACGGATAACCTAACCTGTCGGGAACGGCGGCTGGGTCCCGACCTGGTTAAAGACGGCGTAGAGGAGGAGCTGCTTAAGGAGGTGGAGTTGATCAGGAGCATCCAGGCTCTGTTGAAGAGAACGCTGAGTCAGGCTGTCAATCAAATCAAgtgtAACAGAGATGCCAAGCAGACTCTAGAGCTGGACTGGTCTGATAAGTACCAGGCCTACAGTCTGGATGACCAGTGTGGTCGCTACAACAACATGAGTACTGACACACAGTATCACCCCAACTCAGAGAACCTACAGGACCAgCTGTGTAACCGTGATGCGTGGGTgtctttcacccaggacaacctGTCTGTGGCTCAGCGGGAGGAGCAGGCCAGCGTGGAGCTCAGGCTGCTGGTGGAGAGGGTCCTACAGGAGACGGCTGAGGACCTGAGGGTCCAGTGCTCTAACGTAGACCAGGCCTTCAGCCAGCGCTGTCTGCAGCTCACTGAGGCCAAGACACAGCTACAACTGCACCTCACTCAGatcctgGATCAGATCGGGGCCCAGGAAAGGAACATTGTGTCTCTTCAGCAGGCTCTGTATGATAAAGAGGCCCCTCTGAGAGTGGCTCAGTCCCGGCTGCACCAACGCTCACACAGACCCCACATGGAGCTCTGTAGGGACAACCCACAattcagcctGGTGGGCGAGGCAGGTCAGATCTCCCAGACCATGTCATCCCTGCAGCAGCAGCTGTCTGCAGCGCGGAGCTCCCTGTCCCACCTGGAGGAGTCCCGCATGGTGCTGGAGAAGGACATCGGCTGTAAGACCCACAGCCTGCTCATCGACAGGGACAAGTGCATGTCCCACCGCACCCGCTACCCCACCATCATAGCCCTGTCTGggtactgaagagagagagacagggggatatggggacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgatcaagtCTGTATTAGTGACTAGTGCAACATTGTGTGCATTTGCTTGGTGTTTCCAGTTGTGTTGTGTCAATCAATAAAGGCTTGTCTGTCACAGCTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1627651 lncRNA downstream 19709 13716446 ~ 13718353 (-) False G1422064
TU1627650 lncRNA downstream 19709 13716969 ~ 13718353 (-) True G1422064
TU1627642 lncRNA downstream 33870 13703267 ~ 13704192 (-) True G1422057
TU1627640 lncRNA downstream 38950 13698302 ~ 13699112 (-) True G1422055
TU1627624 lncRNA downstream 56005 13680948 ~ 13682057 (-) True G1422041
TU1627668 lncRNA upstream 2565 13749974 ~ 13801809 (-) False LOC118940087
TU1627675 lncRNA upstream 8282 13755691 ~ 13759040 (-) False LOC110493414
TU1627678 lncRNA upstream 8282 13755691 ~ 13757845 (-) True LOC110493414
TU1627666 lncRNA upstream 36075 13783484 ~ 13801809 (-) False LOC118940087
TU1627667 lncRNA upstream 36075 13783484 ~ 13801809 (-) True LOC118940087
XM_036947982.1 mRNA downstream 93499 13628154 ~ 13644563 (-) False LOC110485508
XM_036947981.1 mRNA downstream 93500 13628154 ~ 13644562 (-) False LOC110485508
XM_036947983.1 mRNA downstream 93501 13628154 ~ 13644561 (-) False LOC110485508
XM_036947984.1 mRNA downstream 93501 13628154 ~ 13644561 (-) False LOC110485508
XM_036948004.1 mRNA downstream 110323 13607347 ~ 13627739 (-) True LOC110493422
XR_002469136.2 mRNA upstream 8116 13755525 ~ 13759600 (-) False LOC110493414
XR_005036668.1 mRNA upstream 8116 13755525 ~ 13759636 (-) False LOC110493414
XM_036948322.1 mRNA upstream 12401 13759810 ~ 13761827 (-) True LOC118940086
XR_005036669.1 mRNA upstream 25784 13773193 ~ 13781676 (-) False LOC118940035
XR_005036670.1 mRNA upstream 25784 13773193 ~ 13781710 (-) False LOC118940035
TU1627536 other downstream 103061 13633208 ~ 13635001 (-) True LOC110485508
TU1627585 other downstream 156497 13580940 ~ 13581565 (-) True G1422007
TU1627370 other downstream 398483 13306674 ~ 13339579 (-) True LOC110485496
TU1627367 other downstream 437644 13298691 ~ 13300418 (-) True LOC110485492
TU1627369 other downstream 439869 13296936 ~ 13298193 (-) False LOC110485492
TU1627681 other upstream 24730 13772139 ~ 13781040 (-) True LOC118940035
TU1627736 other upstream 109467 13856876 ~ 13858250 (-) False G1422125
TU1627739 other upstream 109467 13856876 ~ 13858250 (-) False G1422125
TU1627740 other upstream 109467 13856876 ~ 13858250 (-) True G1422125
TU1627715 other upstream 119011 13866420 ~ 13868671 (-) True LOC118940029

Expression Profile