RNA id: XR_005036669.1


Basic Information

Item Value
RNA id XR_005036669.1
length 2079
RNA type mRNA
GC content 0.42
exon number 3
gene id LOC118940035
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 13772139 ~ 13781710 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGACGTTCCATTATAAGGGGAGTGGCCAGCTCCAAGGCAAGTCTGCAAACCGTCAAGTTTTACATTTCTACAATAATGATAACGTTAAATATAAGCATTATTTCATCAACAGTATACAATATCAATGTATAACTGTACTTCGCTATTTTAAACTCGTCAAAGGGAAAAAGAGTTCCACCGGGGTGAAGAGACGGTGGGCATTTCCCAACGCCCTTCCGGAACCGTATTTTAACCCTGGGATTCAGGTCGGACCTCCTTTATCAGCACACCGTGGCACCCATCACTGCTGAGGAATAGACGTAAACAAGACATTACTTTGAACTGTGACTATTTACTTGAGAATGATAATGGTTAAATTATAACAATGACTGTTACCACGTAAACTATGAGGCGTGCACGCAACATATAAAACAATGATAGCAAATGTCAAACTGTATTTCTGCAATACAGTTACGTATGGGATATAAGAAACAAAAGCTGTGTGTCGCGTCGTCATTTATATTATGTTTATAGTGCAAATTGAGTAATAACGTGCATAAAATTAAAAGGATATTTGTTATGGCCTGTGTACACTTGCACGCGGTAAACTACCGCGTGGCTAGCTTGTGGGCATGCTGGCTGCAGCAGTTCTGTTGTGCAACAAAGATCTGGTTATTAAATGGGTAAATAGTTCAATCTATTCTCCATTAACAGTTAAGTAGTGTGCTCTAACCCGCTCTGGTGACAAACGTCGCTGCCCTGTTTCCAATCGTCCACATTGCTGCTGGGAGAAtctattcaaatacagagctgtgaaaccctgtctgcagatgaagagCAATGGTTCCCAGTCCTGTTCCTGGGGTCTCAAAGGGATGCCTTGCAACTGGAGATTTCTTAAACGATTGCCTACAGTTACTGTGTAGGGCACGGCACAGTTGGGTGACCAGGGCCATCTGGGACTGTCTCGTGGGGGATTTCCGGCATCTGTGAAGGCTACCTGTGTCCTGCATAACTTCATGATGATGAACAGGAGGGGACCTGCAGCGCTCCGCCATGTGCCAGAGGAGAGGTCTGCTGCTCTGCAGGATGTTGCCAGGATGGGGGCCAACAACGCAGCACAGGAGGCAATCTGTGTGCAGGAGACCTTCACCTCCTACTTCTTCACAAAGGAtgctgttccctggcaacaccatagactacactatgcacaatcaaaggctcttttaagagccatccacattgcaataagagtattcttcaatttacttagctatgtcaactgcagttattCAATTTCCAGTTTCTCTTCCTTTAATTTCTACTTCGCAGGTGAGGGTGCTGTTTAGGTAGGAGTGGTgtctgtacaaaaacaaaacaggctCTCACCCATTTTGAAAACATTTAGAACAATTAGACACCCTATAAGCCACACCTACACACGTGTCTATTGCTATAAAGAATAGTTAACACACCTCACACAGGCCTTTTTTCAGGTGAATACGTTTTAGAAAAAAATATTGGTGTGTGTTTCTGGAAAAAAAGGCCACTATTGTCTCAAAAGTCCGTTATTATTAACTTTTAAAACAATTGTTAATCAATAAAAGGGGCAATCCGCAGTTAATATAACTtgtgcttagttcaactgttgtaccccatcagaacccaaaatataagcttgttttgctCCAATGTTGTAAATGTAAACATACACTGTATAGCCCAAAACATGGATGAAGCTATGACGTTGGATGGTCAGTCATTGCATGCACAGCTCTGTCTTAGAGCGGTTACACTTCTCCAGACAAATCCCACAGCTTTTTACAAAAACAGAGGCAGGGTTCAGCTTTTTTATTGTTTCAACTGTGGACTGTCCCTTTAAAAAACCCAACAACCAATCAATACCAACGTCAATACAAATAGAATCCTACTTTGTCTAACATGAAGATTCACAGAATGAAAGAAAACATATATTACAATCAGTGTAAAAAGTCTGCTAGAAGTGGCCTTCGCTTGTTACACACGGACACTAGTCAATGTTAAGCTGGTCTTCCAGTAGTCATTTCAGCCATAGTCAGACTATTGTTCACAAGCGTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1627675 lncRNA downstream 14153 13755691 ~ 13759040 (-) False LOC110493414
TU1627678 lncRNA downstream 15348 13755691 ~ 13757845 (-) True LOC110493414
TU1627651 lncRNA downstream 54840 13716446 ~ 13718353 (-) False G1422064
TU1627650 lncRNA downstream 54840 13716969 ~ 13718353 (-) True G1422064
TU1627642 lncRNA downstream 69001 13703267 ~ 13704192 (-) True G1422057
TU1627666 lncRNA upstream 1808 13783484 ~ 13801809 (-) False LOC118940087
TU1627667 lncRNA upstream 1808 13783484 ~ 13801809 (-) True LOC118940087
TU1627683 lncRNA upstream 29299 13810975 ~ 13837989 (-) True G1422083
TU1627704 lncRNA upstream 34884 13816560 ~ 13818214 (-) True G1422103
TU1627737 lncRNA upstream 75200 13856876 ~ 13858250 (-) False G1422125
XM_036948322.1 mRNA downstream 11366 13759810 ~ 13761827 (-) True LOC118940086
XR_005036668.1 mRNA downstream 13557 13755525 ~ 13759636 (-) False LOC110493414
XR_002469136.2 mRNA downstream 13593 13755525 ~ 13759600 (-) False LOC110493414
XM_021567669.2 mRNA downstream 25782 13738062 ~ 13747411 (-) True tekt4
XM_036948085.1 mRNA downstream 25784 13738062 ~ 13747409 (-) False tekt4
XM_036948323.1 mRNA upstream 208 13781884 ~ 13783901 (-) False LOC118940087
XR_005036672.1 mRNA upstream 8223 13789899 ~ 13793029 (-) False LOC118940037
XR_005036673.1 mRNA upstream 8223 13789899 ~ 13799364 (-) True LOC118940037
XM_036948145.1 mRNA upstream 81763 13863439 ~ 13868827 (-) False LOC118940029
XM_036948144.1 mRNA upstream 82165 13863841 ~ 13868576 (-) False LOC118940029
TU1627536 other downstream 138192 13633208 ~ 13635001 (-) True LOC110485508
TU1627585 other downstream 191628 13580940 ~ 13581565 (-) True G1422007
TU1627370 other downstream 433614 13306674 ~ 13339579 (-) True LOC110485496
TU1627367 other downstream 472775 13298691 ~ 13300418 (-) True LOC110485492
TU1627369 other downstream 475000 13296936 ~ 13298193 (-) False LOC110485492
TU1627736 other upstream 75200 13856876 ~ 13858250 (-) False G1422125
TU1627739 other upstream 75200 13856876 ~ 13858250 (-) False G1422125
TU1627740 other upstream 75200 13856876 ~ 13858250 (-) True G1422125
TU1627715 other upstream 84744 13866420 ~ 13868671 (-) True LOC118940029
TU1627772 other upstream 181031 13962707 ~ 13965337 (-) True LOC110485459

Expression Profile