RNA id: XR_005036672.1


Basic Information

Item Value
RNA id XR_005036672.1
length 2449
RNA type mRNA
GC content 0.44
exon number 3
gene id LOC118940037
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 13789899 ~ 13799364 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACGGAagtgtccactgcttgtatacttTGTATTTTGGTTAATGAAGTACGAAATGCGGGAACTTTTGatacagagctgtgaaaccctgtctgcagatgaagagCAATGGTTCCCAGTCCTGTTCCTGGGGTCTCAAAGGGATGCCTTGCAACTGGAGATTTCTTAAACGATTGCCTACAGTTACTGTGTAGGGCACGGCACAGTTGGGTGACCAGGGCCATCTGGGACTGTCTCGTGGGGGATTTCCGGCATCTGTGAAGGCTACCTGTGTCCTGCATAACTTCATGATGATGAACAGGAGGGGACCTGCAGCGCTCCGCCGTGTGCCAGAGGAGAGGTCTGCTGCTCTGCAGGATGTTGCCAGGATGGGGGCCAACAACGCAGCACAGGAGGCAATCTGTGTGCAGGAGACCTTCACCTCCTACTTCTTCACAAAGGAtgctgttccctggcaacaccatagactacactatgcacaatcaaaggctcttttaagagccatccacattgcaataagagtattcttcaatttacttagctatgtcaactgcagttattCAATTTCCAGTTTCTCTTCCTTTGATTTCTACTTCGCAGGTGAGGGTGCTGTTTAGGTAGGAGTGGTgtctgtacaaaaacaaaacaggctCTCACCCATTTTGAAAACATTTAGAACAATTAGACACCCTATAAGCCACACCTACACACGTGTCTATTGCTATAAAGAATAGTTAACACACCTCACACAGGCCTTTTTTCAGGTGAATACGTTTTAGAAAAAAATATTGGTGTGTGTTTCTGGAAAAAAAGGCCACTATTGTCTCAAAAGTCCGTTATTATTAACTTTTAAAACAATTGTTAATCAATAAAAGGGGCAATCCGCAGTTAATATAACTtgtgcttagttcaactgttgtaccccatcagaacccaaaatataagcttgttttgctCCAATGTTGTAAATGTAAACATACACTGTATAGCCCAAAACATGGATGAAGCTATGACGTTGGATGGTCAGTCATTGCATGCACAGCTCTGTCTTAGAGCGGTTACACTTCTCCAGACAAATCCCACAGCTTTTTACAAAAACAGAGGCAGGGTTCAGCTTTTTTATTGTTTCAACTGTGGACTGTCCCTTTAAAAAACCCAACAACCAATCAATACCAACGTCAATACAAATAGAATCCTACTTTGTCTAACATGAAGATTCACAGAATGAAAGAAAACATATATTACAATCAGTGTAAAAAGTCTGCTAGAAGTGGCCTTCGCTTGTTACACACGGACACTAGTCAATGTTAAGCTGGTCTTCCAGTAGTCATTTCAGCCATAGTCAGACTATTGTTCACAAGCGTGTGTGTTATAGTTGGAAATATGAGTCACCATTACTCAGGTACTAAAAGCGTTCTTGACCTAGTGGTGTATTGGAATGGATTCATAAAAGTATAGATCACTTTGTGGCAGCAGTGTCTGTGGGCCGGGGCTAGTTGTGGATAAATTTGTGGCAGGTTTCTCAGCTTGGTCTAGTCACGTGTTTGTGTATGTGGATCACTTTGTGGCATGCGTCTCATCTTGGTCTATTCGCGTTTGTGGATGTGGATCACTCTCTTGCAGTTGGGGCAGCGGTGTTCTACATCCTTACAGGAGTCAACACAGAATGGAATCCAAGAGCATGGCCAGCATCTAGAGAGAGAAGGTATTCAGTGTGTGTATCCATCTctacagtgtatgtgtgtttgagagaaAAAATAATGTTTGCCACATGTCTGCATatggtgtgtgtgcttgtataaCTCACATGAAGCAGCAGAGGACTCCAAAGATGAGCCAGGTGACCAGTCCAGGGGTGTGTGTGGTCTCTGTCAGAACCTGGACCTGACAGTAGGGACACATCATCTGGCCGGGTACGTCTCTTAGCAGCGGctgctgtatcaccacctgggtTACTGCAGAGGGAGGAGAATACTGGTTAGAACCACCACCTGGGTTACTGCAGAGGGAGGAGAATACTGGTTAGAACCAGATAGAACTGGTCAGAACAGGATATAACTTCATAGAATTGGACAGGACTAGAAAGAATCCCCACCACCCGGGTTACTGCAGAGGGAGGAGAATACTGGTTAGAACCagatagaacaggacagaaccacCACCCGGGTTACTGCAGAGGGAGGAGAATACTGGTTAGAACTGGATAGAACTCAATAGAATGGGATAGACGGGATAGaactggacagaacagaacagaaccaattagaaccTCCAAAAATGGGGTTCTTTGTTCTATATTTCCCGCCCCCACAGAGGGTAGAGGATTAGAAGGGTTGCTAAGGATGGGTGTTGCTATGGCCAGGATATCCAGCCAATGCCTTGTGTGACTACTATTTGGTTCTCGTTTTCCACGGTGTACTGTGAATAATAAAATAAGGAACCGATTGAGGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1627675 lncRNA downstream 30859 13755691 ~ 13759040 (-) False LOC110493414
TU1627678 lncRNA downstream 32054 13755691 ~ 13757845 (-) True LOC110493414
TU1627651 lncRNA downstream 71546 13716446 ~ 13718353 (-) False G1422064
TU1627650 lncRNA downstream 71546 13716969 ~ 13718353 (-) True G1422064
TU1627642 lncRNA downstream 85707 13703267 ~ 13704192 (-) True G1422057
TU1627683 lncRNA upstream 17946 13810975 ~ 13837989 (-) True G1422083
TU1627704 lncRNA upstream 23531 13816560 ~ 13818214 (-) True G1422103
TU1627737 lncRNA upstream 63847 13856876 ~ 13858250 (-) False G1422125
TU1627738 lncRNA upstream 63847 13856876 ~ 13858250 (-) False G1422125
TU1627721 lncRNA upstream 68133 13861162 ~ 13861493 (-) True G1422112
XM_036948323.1 mRNA downstream 5998 13781884 ~ 13783901 (-) False LOC118940087
XR_005036670.1 mRNA downstream 8189 13773193 ~ 13781710 (-) False LOC118940035
XR_005036669.1 mRNA downstream 8223 13773193 ~ 13781676 (-) False LOC118940035
XM_036948322.1 mRNA downstream 28072 13759810 ~ 13761827 (-) True LOC118940086
XR_005036668.1 mRNA downstream 30263 13755525 ~ 13759636 (-) False LOC110493414
XM_036948145.1 mRNA upstream 70410 13863439 ~ 13868827 (-) False LOC118940029
XM_036948144.1 mRNA upstream 70812 13863841 ~ 13868576 (-) False LOC118940029
XM_036948143.1 mRNA upstream 70812 13863841 ~ 13868827 (-) False LOC118940029
XM_036948137.1 mRNA upstream 76244 13869273 ~ 13872039 (-) False LOC118940026
XM_036948138.1 mRNA upstream 76244 13869273 ~ 13872206 (-) False LOC118940026
TU1627681 other downstream 8859 13772139 ~ 13781040 (-) True LOC118940035
TU1627536 other downstream 154898 13633208 ~ 13635001 (-) True LOC110485508
TU1627585 other downstream 208334 13580940 ~ 13581565 (-) True G1422007
TU1627370 other downstream 450320 13306674 ~ 13339579 (-) True LOC110485496
TU1627367 other downstream 489481 13298691 ~ 13300418 (-) True LOC110485492
TU1627736 other upstream 63847 13856876 ~ 13858250 (-) False G1422125
TU1627739 other upstream 63847 13856876 ~ 13858250 (-) False G1422125
TU1627740 other upstream 63847 13856876 ~ 13858250 (-) True G1422125
TU1627715 other upstream 73391 13866420 ~ 13868671 (-) True LOC118940029
TU1627772 other upstream 169678 13962707 ~ 13965337 (-) True LOC110485459

Expression Profile