RNA id: XM_036948138.1


Basic Information

Item Value
RNA id XM_036948138.1
length 1828
RNA type mRNA
GC content 0.48
exon number 6
gene id LOC118940026
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 13869273 ~ 13872206 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCACAACGGAACAGCCAGCCTAGCGGAGGTCGATTCAAACGTCACGGATTCGAGATGGCTGCGTACAAGTTGGTTCTGATCCGTCATGGAGAGAGCTGCTGGAACCAGGAGAACCGCTTCTGCGGATGGTTCGACGCGGACCTCAGTGAAACCGGGGAGCAGGAGgcgaagagaggaggacaggcgtTAAAAGGTGACCCGGTCTATATTGTTACACAGTATAATGTATATCTCTTTCGTTCTCTCGTAGGATTAACACGGGGCATGGAGGGCCATGGAGAGTTTTGCTGACAGATAGTAGGGCAGGCTATTCCCGTTACGCAAGGCGCGGCTTGAGGAAACAGatgaaggaaaggagacgaggAAACCACTTGAGACCTAAGATGTACCCACAAGTAAAGAACCATATGTatgCTGGCTATGAGTTTGATGTGTGCTACACCTCAGTCCTGAAGAGAGCCATCCGGACTCTGTGGTTGGTCCTGGACGGGATCGACCAGATGTGGCTTCCTGTCCACCGCACCTGGCGCCTCAACGAGCGCCACTACGGAGGCCTGACGGGGCTCAACAAGGCAGAGACAGCGGAGAAGCACGGCGAGGCCCAGGTTAAGATCTGGAGGAGGAGCTATGACACCCCGCCTCCTCCCATGGAGGAGGAGCACAACTTCTACAACAACATCAGCCAGGACCGTCGCTATGGGGACCTGACGGAGGATCAGCTGCCGTCCTGTGAGAGCCTGAAGGACACTATTGCCCGGGCGCTGCCCTTCTGGAACGATGAAATCGTGCCCCAAATCAAGGACGGGAAGAGGGTTCTCATCGCCGCCCACGGCAACAGTCTCAGAGGCATTGTCAAGCACCTGGAGGGTATGTCAGAGGAGGCCATCATGGAGCTCAACCTGCCTACAGGGATCCCCATCCTGTatgaactggacaagaacctgaagCCTGTAGGGCCAATGCAGTTCCTGGGAGACGAGGAGACAGTGAAGAAGGCCATGGAGGCTGTGGCTGCCCAGGGCAAGGCCAAGAAATAGACACAGCGCCCCCGCGTGGTCAGGAGGCGTCGGTGTGGCTAGGACACGTTATAATGATAATCACTCACACAGCGTGACATTACATTATCATGTTTACACATAGACAGATATGTgtatataacacacacatacacttcaaacacacacatcacattacACTATAGGTGGATTTGATAGTTCTTTGCTTTCCTGCACATTGAGATGTCAGTATTACACAGCCAATAGGAATCAGTAATGCTGGATTGTACGGATCATCATAATATGAGTTGATCAAGATTGTTTGAGTTGACCAAAAACACATAGGATAGGGACCAGCTAATAGGGTATTTACAGTATCCAAAAACACACAGGATAGGGACCAGCTAATAGAGTATTTACAGTATCCAAAAACACAGAATCAGGaccatcatatatatatatatagtatttatcTAAATGTGGAAAATGATAGAAAGTGCTTTCTACTGCCATGTAGTTTTGCACTGAGTGAACATGTATGTAAACATTGACGAGCACGTTTGAAAAAGGAAACATTGAATCTCATTGTTATTGTTGTATCTCTACGGCAACAGTATGTTATCGTGGTTCTGGTGGTTATTGTTAAAAGGGGCAGGCGGacttgttctgtactgtactgctgaccatagaattagaatgggTAGAATGGGCGTCCTCATTCAGGAGAGGTTCTATACCCCTTCCACTCATTCTAATTCCATGTTGTTGACCTGTGCTTAGTGTTCTGTGTGGAATAAATAAAGATTCATCTTATTATTTATGAGCTGTCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1627743 lncRNA downstream 3761 13865138 ~ 13865512 (-) True G1422127
TU1627711 lncRNA downstream 6672 13862193 ~ 13862601 (-) False G1422108
TU1627710 lncRNA downstream 6672 13862300 ~ 13862601 (-) True G1422108
TU1627721 lncRNA downstream 7780 13861162 ~ 13861493 (-) True G1422112
TU1627738 lncRNA downstream 11023 13856876 ~ 13858250 (-) False G1422125
TU1627729 lncRNA upstream 1984 13874190 ~ 13875983 (-) True G1422119
TU1627730 lncRNA upstream 20934 13893140 ~ 13894467 (-) True G1422120
TU1627749 lncRNA upstream 30525 13902731 ~ 13903134 (-) False G1422131
TU1627747 lncRNA upstream 30613 13902819 ~ 13903134 (-) False G1422131
TU1627748 lncRNA upstream 30684 13902890 ~ 13903134 (-) True G1422131
XM_036948145.1 mRNA downstream 446 13863439 ~ 13868827 (-) False LOC118940029
XM_036948143.1 mRNA downstream 446 13863841 ~ 13868827 (-) False LOC118940029
XM_036948144.1 mRNA downstream 697 13863841 ~ 13868576 (-) False LOC118940029
XR_005036673.1 mRNA downstream 69909 13789899 ~ 13799364 (-) True LOC118940037
XR_005036672.1 mRNA downstream 76244 13789899 ~ 13793029 (-) False LOC118940037
XM_036948068.1 mRNA upstream 242 13872448 ~ 13879257 (-) True LOC110485450
XM_021556525.2 mRNA upstream 25646 13897852 ~ 13901992 (-) True LOC110485453
XR_005037151.1 mRNA upstream 43938 13916144 ~ 13916250 (-) True LOC118940563
XR_005037152.1 mRNA upstream 47187 13919393 ~ 13919499 (-) True LOC118940564
XR_005037153.1 mRNA upstream 50207 13922413 ~ 13922519 (-) True LOC118940565
TU1627715 other downstream 602 13866420 ~ 13868671 (-) True LOC118940029
TU1627736 other downstream 11023 13856876 ~ 13858250 (-) False G1422125
TU1627739 other downstream 11023 13856876 ~ 13858250 (-) False G1422125
TU1627740 other downstream 11023 13856876 ~ 13858250 (-) True G1422125
TU1627681 other downstream 88233 13772139 ~ 13781040 (-) True LOC118940035
TU1627772 other upstream 90501 13962707 ~ 13965337 (-) True LOC110485459
TU1627971 other upstream 403707 14275913 ~ 14277633 (-) False LOC110485493
TU1627976 other upstream 414960 14287166 ~ 14289013 (-) False LOC110485493
TU1627977 other upstream 414960 14287166 ~ 14289013 (-) False LOC110485493
TU1627978 other upstream 414960 14287166 ~ 14289013 (-) False LOC110485493

Expression Profile