RNA id: TU1627729


Basic Information

Item Value
RNA id TU1627729
length 1794
lncRNA type read_through
GC content 0.42
exon number 1
gene id G1422119
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 13874190 ~ 13875983 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tttggacacacctacacattcaagggtttttctttattttgactattttctacattgtagaatgatagtgaagacatcaaaactatgaaataacacatatggaatcatgttgtaaccaaaaaagggttcaacaaataaaatcaaaatatatgttatatttgagattcttcaaagtagccaccctttgccttgatgacagctttgcacactattggcattctctcaaccagcttcatgaggtagtcacctggaatgtatttcatttcaattaacaagtgtgccttgttcaaagttaatttgtggaatttctttccttcttaatgcgtttgagccaatcagttgtgttgtgttgtgacaaggtatacagaagatagccctatttggtaaaataccaagtccatattatggcaaaaacagctcaaataagcagagaaattacagtccatcattactttaacacatttcaagacctttgaaagtttcttcatgtgcagtcgcaaaaaccatgaagcactatgatgaaactagctctcatgaggaccgccacaggaaaggaagacccagggttacctctgctgcataggataaattcattagagttaccaccctcagaaattgcagcccaaataaatgacacaaaaaataagaagagacatgcttggcccaagaaacacaagcaatggacattagaccggtggaaatctgtcctttgatctgatgagtccaaatttgagatttttggttccaaccgccgtgtctttgtgagacgcagagtaggtgaacggatgatctccgcatgttgttcccaccgtgaagcatgaaggaggaggtgtgatggtgtggggatgctttgctggtgacactctctgtgatttatttagaattcaaggcacacttacttaaccagtatggctaccacagcattctgcagtgatacaccatcccatctggtttgtgctttgtttttcaacagggcaatgacccaacataTTTCCAgctgtgtacgggctatttgaccaaaaaggagagtaatggtgctgcatcagatgacctggcctccactggAAGTCTCCCACTGTACCGCTGTACTGTCCTCTTAGCAGAGACGCCACCTGCAGGCCATCAGGAGAAATGCACCTCCAGTTTACCACAGCAACGGTAACAACCTGGCAACAGTACGAGCAGGAGACAACCCTCTAGATACCATCGCTAACAGGACGTTGAAGTCCAATAAGCAGTGTTGTAGAACACATATGTATCTGATGTGGATATCCTTTATGATTATGATGAAGAGGATGAAGGAGAATATAGAGAGAACATAGAGAGTGGGAGTGGAGGAAcaaggaaaggaaggaaggaaggaaggaaggtttgAGATTGAGAtgctttgggatgagttggaactcagagtgaaggaaaagcagccaacaagtgctcagcatatgtgggaactccttcaagactgttggaaaagcattccaggtgaagctggttgagagaataccaagagtgtgcaaagctgtcatcaaggcaaagggtgggtactttttttttaacctttatttaactacacaagtcagttaagaacaaattcttattttcaatgacggcctaggaacagtgggttaactgcctgttcaggggcagaacgacagatttgtaccttgtcagctcaggggtttgaagttgcaaccttccagttactagtccaacgctctaaccactaggctaccctgccaccccgaagaatctaatatatattttgatttgtttaatacttttttggttactaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1627743 lncRNA downstream 8678 13865138 ~ 13865512 (-) True G1422127
TU1627711 lncRNA downstream 11589 13862193 ~ 13862601 (-) False G1422108
TU1627710 lncRNA downstream 11589 13862300 ~ 13862601 (-) True G1422108
TU1627721 lncRNA downstream 12697 13861162 ~ 13861493 (-) True G1422112
TU1627737 lncRNA downstream 15940 13856876 ~ 13858250 (-) False G1422125
TU1627730 lncRNA upstream 17157 13893140 ~ 13894467 (-) True G1422120
TU1627749 lncRNA upstream 26748 13902731 ~ 13903134 (-) False G1422131
TU1627747 lncRNA upstream 26836 13902819 ~ 13903134 (-) False G1422131
TU1627748 lncRNA upstream 26907 13902890 ~ 13903134 (-) True G1422131
TU1627753 lncRNA upstream 30168 13906151 ~ 13906636 (-) True G1422133
XM_036948138.1 mRNA downstream 1984 13869273 ~ 13872206 (-) False LOC118940026
XM_036948136.1 mRNA downstream 2116 13869282 ~ 13872074 (-) True LOC118940026
XM_036948137.1 mRNA downstream 2151 13869273 ~ 13872039 (-) False LOC118940026
XM_036948145.1 mRNA downstream 5363 13863439 ~ 13868827 (-) False LOC118940029
XM_036948143.1 mRNA downstream 5363 13863841 ~ 13868827 (-) False LOC118940029
XM_021556525.2 mRNA upstream 21869 13897852 ~ 13901992 (-) True LOC110485453
XR_005037151.1 mRNA upstream 40161 13916144 ~ 13916250 (-) True LOC118940563
XR_005037152.1 mRNA upstream 43410 13919393 ~ 13919499 (-) True LOC118940564
XR_005037153.1 mRNA upstream 46430 13922413 ~ 13922519 (-) True LOC118940565
XR_005037155.1 mRNA upstream 49508 13925491 ~ 13925597 (-) True LOC118940567
TU1627715 other downstream 5519 13866420 ~ 13868671 (-) True LOC118940029
TU1627736 other downstream 15940 13856876 ~ 13858250 (-) False G1422125
TU1627739 other downstream 15940 13856876 ~ 13858250 (-) False G1422125
TU1627740 other downstream 15940 13856876 ~ 13858250 (-) True G1422125
TU1627681 other downstream 93150 13772139 ~ 13781040 (-) True LOC118940035
TU1627772 other upstream 86724 13962707 ~ 13965337 (-) True LOC110485459
TU1627971 other upstream 399930 14275913 ~ 14277633 (-) False LOC110485493
TU1627976 other upstream 411183 14287166 ~ 14289013 (-) False LOC110485493
TU1627977 other upstream 411183 14287166 ~ 14289013 (-) False LOC110485493
TU1627978 other upstream 411183 14287166 ~ 14289013 (-) False LOC110485493

Expression Profile