LOC118940026 (LOC106564313)


Basic Information

Item Value
gene id LOC118940026
gene name LOC106564313
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 13869273 ~ 13872206 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036948137.1
CTGCGTACAAGTTGGTTCTGATCCGTCATGGAGAGAGCTGCTGGAACCAGGAGAACCGCTTCTGCGGATGGTTCGACGCGGACCTCAGTGAAACCGGGGAGCAGGAGgcgaagagaggaggacaggcgtTAAAAGatgaaggaaaggagacgaggAAACCACTTGAGACCTAAGATGTACCCACAAGTAAAGAACCATATGTatgCTGGCTATGAGTTTGATGTGTGCTACACCTCAGTCCTGAAGAGAGCCATCCGGACTCTGTGGTTGGTCCTGGACGGGATCGACCAGATGTGGCTTCCTGTCCACCGCACCTGGCGCCTCAACGAGCGCCACTACGGAGGCCTGACGGGGCTCAACAAGGCAGAGACAGCGGAGAAGCACGGCGAGGCCCAGGTTAAGATCTGGAGGAGGAGCTATGACACCCCGCCTCCTCCCATGGAGGAGGAGCACAACTTCTACAACAACATCAGCCAGGACCGTCGCTATGGGGACCTGACGGAGGATCAGCTGCCGTCCTGTGAGAGCCTGAAGGACACTATTGCCCGGGCGCTGCCCTTCTGGAACGATGAAATCGTGCCCCAAATCAAGGACGGGAAGAGGGTTCTCATCGCCGCCCACGGCAACAGTCTCAGAGGCATTGTCAAGCACCTGGAGGGTATGTCAGAGGAGGCCATCATGGAGCTCAACCTGCCTACAGGGATCCCCATCCTGTatgaactggacaagaacctgaagCCTGTAGGGCCAATGCAGTTCCTGGGAGACGAGGAGACAGTGAAGAAGGCCATGGAGGCTGTGGCTGCCCAGGGCAAGGCCAAGAAATAGACACAGCGCCCCCGCGTGGTCAGGAGGCGTCGGTGTGGCTAGGACACGTTATAATGATAATCACTCACACAGCGTGACATTACATTATCATGTTTACACATAGACAGATATGTgtatataacacacacatacacttcaaacacacacatcacattacACTATAGGTGGATTTGATAGTTCTTTGCTTTCCTGCACATTGAGATGTCAGTATTACACAGCCAATAGGAATCAGTAATGCTGGATTGTACGGATCATCATAATATGAGTTGATCAAGATTGTTTGAGTTGACCAAAAACACATAGGATAGGGACCAGCTAATAGGGTATTTACAGTATCCAAAAACACACAGGATAGGGACCAGCTAATAGAGTATTTACAGTATCCAAAAACACAGAATCAGGaccatcatatatatatatatagtatttatcTAAATGTGGAAAATGATAGAAAGTGCTTTCTACTGCCATGTAGTTTTGCACTGAGTGAACATGTATGTAAACATTGACGAGCACGTTTGAAAAAGGAAACATTGAATCTCATTGTTATTGTTGTATCTCTACGGCAACAGTATGTTATCGTGGTTCTGGTGGTTATTGTTAAAAGGGGCAGGCGGacttgttctgtactgtactgctgaccatagaattagaatgggTAGAATGGGCGTCCTCATTCAGGAGAGGTTCTATACCCCTTCCACTCATTCTAATTCCATGTTGTTGACCTGTGCTTAGTGTTCTGTGTGGAATAAATAAAGATTCATCTTATTATTTATGAGCTGTCTAA
>XM_036948138.1
TTCACAACGGAACAGCCAGCCTAGCGGAGGTCGATTCAAACGTCACGGATTCGAGATGGCTGCGTACAAGTTGGTTCTGATCCGTCATGGAGAGAGCTGCTGGAACCAGGAGAACCGCTTCTGCGGATGGTTCGACGCGGACCTCAGTGAAACCGGGGAGCAGGAGgcgaagagaggaggacaggcgtTAAAAGGTGACCCGGTCTATATTGTTACACAGTATAATGTATATCTCTTTCGTTCTCTCGTAGGATTAACACGGGGCATGGAGGGCCATGGAGAGTTTTGCTGACAGATAGTAGGGCAGGCTATTCCCGTTACGCAAGGCGCGGCTTGAGGAAACAGatgaaggaaaggagacgaggAAACCACTTGAGACCTAAGATGTACCCACAAGTAAAGAACCATATGTatgCTGGCTATGAGTTTGATGTGTGCTACACCTCAGTCCTGAAGAGAGCCATCCGGACTCTGTGGTTGGTCCTGGACGGGATCGACCAGATGTGGCTTCCTGTCCACCGCACCTGGCGCCTCAACGAGCGCCACTACGGAGGCCTGACGGGGCTCAACAAGGCAGAGACAGCGGAGAAGCACGGCGAGGCCCAGGTTAAGATCTGGAGGAGGAGCTATGACACCCCGCCTCCTCCCATGGAGGAGGAGCACAACTTCTACAACAACATCAGCCAGGACCGTCGCTATGGGGACCTGACGGAGGATCAGCTGCCGTCCTGTGAGAGCCTGAAGGACACTATTGCCCGGGCGCTGCCCTTCTGGAACGATGAAATCGTGCCCCAAATCAAGGACGGGAAGAGGGTTCTCATCGCCGCCCACGGCAACAGTCTCAGAGGCATTGTCAAGCACCTGGAGGGTATGTCAGAGGAGGCCATCATGGAGCTCAACCTGCCTACAGGGATCCCCATCCTGTatgaactggacaagaacctgaagCCTGTAGGGCCAATGCAGTTCCTGGGAGACGAGGAGACAGTGAAGAAGGCCATGGAGGCTGTGGCTGCCCAGGGCAAGGCCAAGAAATAGACACAGCGCCCCCGCGTGGTCAGGAGGCGTCGGTGTGGCTAGGACACGTTATAATGATAATCACTCACACAGCGTGACATTACATTATCATGTTTACACATAGACAGATATGTgtatataacacacacatacacttcaaacacacacatcacattacACTATAGGTGGATTTGATAGTTCTTTGCTTTCCTGCACATTGAGATGTCAGTATTACACAGCCAATAGGAATCAGTAATGCTGGATTGTACGGATCATCATAATATGAGTTGATCAAGATTGTTTGAGTTGACCAAAAACACATAGGATAGGGACCAGCTAATAGGGTATTTACAGTATCCAAAAACACACAGGATAGGGACCAGCTAATAGAGTATTTACAGTATCCAAAAACACAGAATCAGGaccatcatatatatatatatagtatttatcTAAATGTGGAAAATGATAGAAAGTGCTTTCTACTGCCATGTAGTTTTGCACTGAGTGAACATGTATGTAAACATTGACGAGCACGTTTGAAAAAGGAAACATTGAATCTCATTGTTATTGTTGTATCTCTACGGCAACAGTATGTTATCGTGGTTCTGGTGGTTATTGTTAAAAGGGGCAGGCGGacttgttctgtactgtactgctgaccatagaattagaatgggTAGAATGGGCGTCCTCATTCAGGAGAGGTTCTATACCCCTTCCACTCATTCTAATTCCATGTTGTTGACCTGTGCTTAGTGTTCTGTGTGGAATAAATAAAGATTCATCTTATTATTTATGAGCTGTCTAA
>XM_036948136.1
CGGAGGTCGATTCAAACGTCACGGATTCGAGATGGCTGCGTACAAGTTGGTTCTGATCCGTCATGGAGAGAGCTGCTGGAACCAGGAGAACCGCTTCTGCGGATGGTTCGACGCGGACCTCAGTGAAACCGGGGAGCAGGAGgcgaagagaggaggacaggcgtTAAAAGatgCTGGCTATGAGTTTGATGTGTGCTACACCTCAGTCCTGAAGAGAGCCATCCGGACTCTGTGGTTGGTCCTGGACGGGATCGACCAGATGTGGCTTCCTGTCCACCGCACCTGGCGCCTCAACGAGCGCCACTACGGAGGCCTGACGGGGCTCAACAAGGCAGAGACAGCGGAGAAGCACGGCGAGGCCCAGGTTAAGATCTGGAGGAGGAGCTATGACACCCCGCCTCCTCCCATGGAGGAGGAGCACAACTTCTACAACAACATCAGCCAGGACCGTCGCTATGGGGACCTGACGGAGGATCAGCTGCCGTCCTGTGAGAGCCTGAAGGACACTATTGCCCGGGCGCTGCCCTTCTGGAACGATGAAATCGTGCCCCAAATCAAGGACGGGAAGAGGGTTCTCATCGCCGCCCACGGCAACAGTCTCAGAGGCATTGTCAAGCACCTGGAGGGTATGTCAGAGGAGGCCATCATGGAGCTCAACCTGCCTACAGGGATCCCCATCCTGTatgaactggacaagaacctgaagCCTGTAGGGCCAATGCAGTTCCTGGGAGACGAGGAGACAGTGAAGAAGGCCATGGAGGCTGTGGCTGCCCAGGGCAAGGCCAAGAAATAGACACAGCGCCCCCGCGTGGTCAGGAGGCGTCGGTGTGGCTAGGACACGTTATAATGATAATCACTCACACAGCGTGACATTACATTATCATGTTTACACATAGACAGATATGTgtatataacacacacatacacttcaaacacacacatcacattacACTATAGGTGGATTTGATAGTTCTTTGCTTTCCTGCACATTGAGATGTCAGTATTACACAGCCAATAGGAATCAGTAATGCTGGATTGTACGGATCATCATAATATGAGTTGATCAAGATTGTTTGAGTTGACCAAAAACACATAGGATAGGGACCAGCTAATAGGGTATTTACAGTATCCAAAAACACACAGGATAGGGACCAGCTAATAGAGTATTTACAGTATCCAAAAACACAGAATCAGGaccatcatatatatatatatagtatttatcTAAATGTGGAAAATGATAGAAAGTGCTTTCTACTGCCATGTAGTTTTGCACTGAGTGAACATGTATGTAAACATTGACGAGCACGTTTGAAAAAGGAAACATTGAATCTCATTGTTATTGTTGTATCTCTACGGCAACAGTATGTTATCGTGGTTCTGGTGGTTATTGTTAAAAGGGGCAGGCGGacttgttctgtactgtactgctgaccatagaattagaatgggTAGAATGGGCGTCCTCATTCAGGAGAGGTTCTATACCCCTTCCACTCATTCTAATTCCATGTTGTTGACCTGTGCTTAGTGTTCTGTGTGGAATAAATAAAGATTCATCTTATTATTTATGA

Function

NR:

description
phosphoglycerate mutase 1

GO: NA

KEGG:

id description
K01834 PGAM, gpmA; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036948137.1 False 1618 mRNA 0.48 5 13869273 13872039
XM_036948138.1 False 1828 mRNA 0.48 6 13869273 13872206
XM_036948136.1 True 1577 mRNA 0.48 4 13869282 13872074

Neighbor

gene id symbol gene type direction distance location
LOC118940029 exosc1 coding downstream 446 13863439 ~ 13868827 (-)
LOC118940037 NA coding downstream 69909 13789899 ~ 13799364 (-)
LOC118940087 NA coding downstream 85372 13749974 ~ 13801809 (-)
LOC118940035 NA coding downstream 87563 13772139 ~ 13781710 (-)
LOC118940086 NA coding downstream 107446 13759810 ~ 13761827 (-)
LOC110485450 LOC106564311 coding upstream 242 13872448 ~ 13879257 (-)
LOC110485453 NA coding upstream 25646 13897852 ~ 13901992 (-)
LOC118940563 NA coding upstream 43938 13916144 ~ 13916250 (-)
LOC118940564 NA coding upstream 47187 13919393 ~ 13919499 (-)
LOC118940565 NA coding upstream 50207 13922413 ~ 13922519 (-)
G1422127 NA non-coding downstream 3761 13865138 ~ 13865512 (-)
G1422108 NA non-coding downstream 6672 13862193 ~ 13862601 (-)
G1422112 NA non-coding downstream 7780 13861162 ~ 13861493 (-)
G1422125 LOC106595916 non-coding downstream 11023 13856876 ~ 13858250 (-)
G1422083 NA non-coding downstream 31284 13810975 ~ 13837989 (-)
G1422119 NA non-coding upstream 1984 13874190 ~ 13875983 (-)
G1422120 NA non-coding upstream 20934 13893140 ~ 13894467 (-)
G1422131 NA non-coding upstream 30525 13902731 ~ 13903134 (-)
G1422133 NA non-coding upstream 33945 13906151 ~ 13906636 (-)
G1422139 NA non-coding upstream 44841 13917047 ~ 13917322 (-)
LOC110485508 LOC106564355 other downstream 234272 13628154 ~ 13644563 (-)
G1422007 NA other downstream 287708 13580940 ~ 13581565 (-)
LOC110485459 LOC106564320 other upstream 90501 13959793 ~ 13997078 (-)
LOC110485493 LOC106592221 other upstream 403707 14275862 ~ 14289159 (-)
LOC110485498 LOC106592261 other upstream 422812 14293700 ~ 14343967 (-)
G1422757 NA other upstream 719260 14591466 ~ 14592594 (-)
G1422796 NA other upstream 893325 14765531 ~ 14768638 (-)

Expression


Co-expression Network