RNA id: TU1627736


Basic Information

Item Value
RNA id TU1627736
length 1189
RNA type TUCP
GC content 0.48
exon number 3
gene id G1422125
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 13856876 ~ 13858250 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGGTATTCAGGGTCGCAGCTCTCCACCTTTATCTTCTTTTTCCCCTTCGTCATAACCTTCTTCCCTTTCTGGTGAGGGGTGCTGTCCTCcatttctgtctctatctcagaGGAGCTCTTCTTCACCTTCTTTttccttccctcgctctctccgtcCTCCACCTGTTCCACTACTCCTGTCATATCCACCCTTTTCATATGTTTGGGCTTCCGCTtgtccaccaccacctcctcctctgttaGTGCAGAggcctttctcttcttcttcttgccctcctcctttctctccgtCTCCGTGTCCATGGTGGTGTCTGCAGCGCTGCTGGAGGACTTGGGTTTATTCTTCTTCTTcttggtgtTATTCTGTTCCTCCTCCTGTACTGCTACTGTAGCCTCAgctcccttcttcttcttcttcttggtgtTATTCTGTTCCTCCTCCTGTACTGCTACTGTAGCCTCAgctcccttcttcttcttcttcttctttacTACCacttctttctctgcctctccgcACTCTTTCTCTTTTGTCTCTCCTTTCTCAGCGACTGCTCTCTTCTtacccttcttcttcttcttcttcgtctccccctcttcctcctcctgacTCTCAGTTGGTTCAGTAACTTTAGGGATCTTTTTCAGTTTATTTTCTTCCTCTGTTTTTCCCTTCTTTTTCTTGCCTTTCTTTATTTCTatcacctctccttcctctaccttGACAACGctgatctctgtctcttctgCCTGAGAGCGCTTCTTTTTTTTCAGCTTCTGCCCATTTTCCACGACTCTTTTCTCGTCCCTTAAtccactgtgttctgtctctagctCCGTTTTAACAGTGTTAACACctttctgcttcttcttctcctgGCCGCACCCTCCTCCGTCATTTCCATTAGTCATGACTTCCTCACCGTTGGTGTCAGTCCCAGACAACAACTTCTTCTTATTTCCTTTCTGTTTCTCCTGCTCTCCTTCCGTATTCCCCCATTCCCCATTGGACACCCGCTCTTCTTCTACCAGAGTCTCTACTTTcgtcttctttttcttcttcactCCTTCGCTATTCCCCTGATTTATGGAGGTGTTTTCTGAGATCTCATCCTCAGCGTGGGTGTCCTTCCCACTCTTCTTGTTCGTCTTCTTCATGGTAACCATCCTGTTGCCTGTGTCGGCTTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1627683 lncRNA downstream 18887 13810975 ~ 13837989 (-) True G1422083
TU1627704 lncRNA downstream 38662 13816560 ~ 13818214 (-) True G1422103
TU1627668 lncRNA downstream 55067 13749974 ~ 13801809 (-) False LOC118940087
TU1627666 lncRNA downstream 55067 13783484 ~ 13801809 (-) False LOC118940087
TU1627667 lncRNA downstream 55067 13783484 ~ 13801809 (-) True LOC118940087
TU1627721 lncRNA upstream 2912 13861162 ~ 13861493 (-) True G1422112
TU1627711 lncRNA upstream 3943 13862193 ~ 13862601 (-) False G1422108
TU1627710 lncRNA upstream 4050 13862300 ~ 13862601 (-) True G1422108
TU1627743 lncRNA upstream 6888 13865138 ~ 13865512 (-) True G1422127
TU1627729 lncRNA upstream 15940 13874190 ~ 13875983 (-) True G1422119
XR_005036673.1 mRNA downstream 57512 13789899 ~ 13799364 (-) True LOC118940037
XR_005036672.1 mRNA downstream 63847 13789899 ~ 13793029 (-) False LOC118940037
XM_036948323.1 mRNA downstream 72975 13781884 ~ 13783901 (-) False LOC118940087
XR_005036670.1 mRNA downstream 75166 13773193 ~ 13781710 (-) False LOC118940035
XR_005036669.1 mRNA downstream 75200 13773193 ~ 13781676 (-) False LOC118940035
XM_036948145.1 mRNA upstream 5189 13863439 ~ 13868827 (-) False LOC118940029
XM_036948144.1 mRNA upstream 5591 13863841 ~ 13868576 (-) False LOC118940029
XM_036948143.1 mRNA upstream 5591 13863841 ~ 13868827 (-) False LOC118940029
XM_036948137.1 mRNA upstream 11023 13869273 ~ 13872039 (-) False LOC118940026
XM_036948138.1 mRNA upstream 11023 13869273 ~ 13872206 (-) False LOC118940026
TU1627681 other downstream 75836 13772139 ~ 13781040 (-) True LOC118940035
TU1627536 other downstream 221875 13633208 ~ 13635001 (-) True LOC110485508
TU1627585 other downstream 275311 13580940 ~ 13581565 (-) True G1422007
TU1627370 other downstream 517297 13306674 ~ 13339579 (-) True LOC110485496
TU1627367 other downstream 556458 13298691 ~ 13300418 (-) True LOC110485492
TU1627715 other upstream 8170 13866420 ~ 13868671 (-) True LOC118940029
TU1627772 other upstream 104457 13962707 ~ 13965337 (-) True LOC110485459
TU1627971 other upstream 417663 14275913 ~ 14277633 (-) False LOC110485493
TU1627976 other upstream 428916 14287166 ~ 14289013 (-) False LOC110485493
TU1627977 other upstream 428916 14287166 ~ 14289013 (-) False LOC110485493

Expression Profile