RNA id: TU1627675


Basic Information

Item Value
RNA id TU1627675
length 1636
lncRNA type read_through
GC content 0.43
exon number 3
gene id LOC110493414
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 13755525 ~ 13759636 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCTGTGTACACTTGCACGCGGTAAACTACCGCGTGGCTAGCTTGTGGGCATGCTGGCAGCAGCAGTTCTGTTGTGCAACAAAGATCTGGTTATTAAATGGGTAAATAGTTCAATCTATTCTCCATTAACAGTTAAGTAGTGTGCTCTAACCCGCTCTGGTGACAAACGTCGCTGCCCTGTTTCCAATCGTCCACATTGCTGCTGGGAGAAtctattcaaatacagagctgtgaaaccctgtctgcagatgaagagCAATGGTTCCCAGTCCTGTTCCTGGGGTCTCAAAGGGATGCCTTGCAACTGGAGATTTCTTAAACGATTGCCTACAGTTACTGTGTAGGGCACGGCACAGTTGGGTGACCAGGGCCATCTGGGACTGTCTCGTGGGGGATTTCAGGCATCTGTGAAGGCTACCTGTGTCCTGCATAACTTCATGATGATGAACAGGAGGGGACCTGCAGCGCTCCGCCGTGTTCCAGAGGAGAGGTCTGCTGCTCTGCAGGATGTTGCCAGGATGGGGGCCAACAACGCAGCACAGGAGGCAATCCGTGTGCAGGAGACCTTCACCTCCTACTTCTTCACAAAGGATTctgttccctggcaacaccacagactacactatgcacaaccaaaggctcttttaagagccatccacattgcaataagagtattcttccatttactcagctatgtcaactgcagttattAATTTCAGTTTCTGTTCCTGTGAGTTCTACTTCACAGGTGAGGGTGCTGTTTAGGTAGGTGTGGTGTCTGTACAAATACAAAACAGGCTCTTTTAAGAGTCACTCATATTGAAAACATTTAGAACAATTAGACACCCTATAAGCCACACCTACACATTTGTCTATCAATCTGATTtatgtgttgtgtagtaagcaGGCTCCGGTGTATAACtggctccttccaccttcaaagAATAGACAAGAGGAcaaaccatggagaatagtaagacacttCATTATTTATATAACTACGCTAAATTGTTTGTACTCAAGTGTCTGCCTCACCCGCTGTTCAGATAACCTTcgggcccaaggctggttaggagacacctcTAGAGACACTTATGtaaaacatttcacattctctactggttgaaGTCTCTCATTTGATGAAATACCACACCTATCCTGTCCTCAGATGAGTGCAGATAAAGGAAATTAGATAGATGAACCTATTTACATGATGCAAAGGAagtgtaatgttttttttttttaaattctgtttctgtatatatgaattacaaataagCCCTTTAACTAGTTAAATCATGTTTATAGTCTATTTGTTACTATGTGtaaccattgatgtcccaggaccaagattggtaaacactgttgaagtgtataattgtaatacatacatgcagacacggCATCATTCAAAGACTGCCCGTttgatactcctggtattggatatgactgaaaaagaatCTCAGACATTCATACCAGAACCGCACCTTTATTTACCAaggtagagtacatgatcagtggaaatattaaatgtacaggctacaatgtggggatctcatgctaCATGTATATACGACTTGCATCCGTGGCACAAAGTTAgattatattctactcaatccataggcttcattgaTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1627651 lncRNA downstream 37338 13716446 ~ 13718353 (-) False G1422064
TU1627650 lncRNA downstream 37338 13716969 ~ 13718353 (-) True G1422064
TU1627642 lncRNA downstream 51499 13703267 ~ 13704192 (-) True G1422057
TU1627640 lncRNA downstream 56579 13698302 ~ 13699112 (-) True G1422055
TU1627624 lncRNA downstream 73634 13680948 ~ 13682057 (-) True G1422041
TU1627666 lncRNA upstream 24444 13783484 ~ 13801809 (-) False LOC118940087
TU1627667 lncRNA upstream 24444 13783484 ~ 13801809 (-) True LOC118940087
TU1627683 lncRNA upstream 51935 13810975 ~ 13837989 (-) True G1422083
TU1627704 lncRNA upstream 57520 13816560 ~ 13818214 (-) True G1422103
TU1627737 lncRNA upstream 97836 13856876 ~ 13858250 (-) False G1422125
XM_021567669.2 mRNA downstream 8280 13738062 ~ 13747411 (-) True tekt4
XM_036948085.1 mRNA downstream 8282 13738062 ~ 13747409 (-) False tekt4
XM_036947982.1 mRNA downstream 111128 13628154 ~ 13644563 (-) False LOC110485508
XM_036947981.1 mRNA downstream 111129 13628154 ~ 13644562 (-) False LOC110485508
XM_036947984.1 mRNA downstream 111130 13628154 ~ 13644561 (-) False LOC110485508
XM_036948322.1 mRNA upstream 770 13759810 ~ 13761827 (-) True LOC118940086
XR_005036669.1 mRNA upstream 14153 13773193 ~ 13781676 (-) False LOC118940035
XR_005036670.1 mRNA upstream 14153 13773193 ~ 13781710 (-) False LOC118940035
XM_036948323.1 mRNA upstream 22844 13781884 ~ 13783901 (-) False LOC118940087
XR_005036672.1 mRNA upstream 30859 13789899 ~ 13793029 (-) False LOC118940037
TU1627536 other downstream 120690 13633208 ~ 13635001 (-) True LOC110485508
TU1627585 other downstream 174126 13580940 ~ 13581565 (-) True G1422007
TU1627370 other downstream 416112 13306674 ~ 13339579 (-) True LOC110485496
TU1627367 other downstream 455273 13298691 ~ 13300418 (-) True LOC110485492
TU1627369 other downstream 457498 13296936 ~ 13298193 (-) False LOC110485492
TU1627681 other upstream 13099 13772139 ~ 13781040 (-) True LOC118940035
TU1627736 other upstream 97836 13856876 ~ 13858250 (-) False G1422125
TU1627739 other upstream 97836 13856876 ~ 13858250 (-) False G1422125
TU1627740 other upstream 97836 13856876 ~ 13858250 (-) True G1422125
TU1627715 other upstream 107380 13866420 ~ 13868671 (-) True LOC118940029

Expression Profile