RNA id: TU1627955


Basic Information

Item Value
RNA id TU1627955
length 977
RNA type TUCP
GC content 0.53
exon number 4
gene id LOC110485498
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 14293700 ~ 14343967 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctgcctgccagccaTAGGCTACATGCACAAGCCATGCCAACCAGATTGAGTGGGGGCTTTCACAGCTAAAGTAGACAAAGAAAAGGCTTGCTTGTCAAACGTAAGCTAGGCTATAGCATCGCACTACAGTGCAGAGAGAACAACATGTGTGGCGGTTGGGAATATTTCTGATAACTTCATGCGAGATAGATTGATCATATCGAGAGTTACGGGGGGACTGGGAATCCCCCCCGGTTTTCAGAAATCAGACATCGTTAATCGGTTTACATAGAGTAGCCTAGCTAGATAAGGAAGAGGAAGATATATCGTGTATTCGGGATGTGTAGCCGAGTTGGAACTGTCTAGAAAACGTGATTATAGGTTAGGTGGCTGGAGATATTCACAGCAGAAGAACTGTCCGAGTATTCGAGTGCTGAAACGGAAGCAAGCGGAGCGGAGCGGAAAACGGGCCGCACTGGATAGGGACGCAACAACCGCGAGCGCGGTcagcgtgtgtctgtctgttgctaTTTCAGAGgaaggagagatggagggtcgAGAGATGGGATTAAAAAACGAGTGGAGTTCTGAGGTGTGTTCAGAGGGGGCTGGTTCTCGTGGCATGTCGACCACTAATAAGGGAAACAAGGCCTTGAAGgtGAAGAGGGAGCCGGGGGAGAATGGGACCACCCTGACAGATGATGAGCTGGTGACTATGTCTGTCCGGGAGCTCAACCAGCACCTCCGCGGCCTCACCAAGGATGAGATCCTGCAGCTTAAACAGCGCCGGCGCACCCTGAAGAACCGTGGCTACGCCGCCAGCTGCCGGGTCAAACGGGTCACCCAGAAGGAGGAGCTGGAGAAGCAGAAGTCACAGCTTCAACAGGAAGTGGATAAGTTGGCGTCGGAGAACGCCAGCATGAGGGCGGAGCTCGATCACCTGAGGTCGAAGTACGAGGCGCTACAGAGTTTTGCAAGGACTGTGGCGAGGAGCCCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1627980 lncRNA downstream 7961 14286354 ~ 14287057 (-) False LOC110485493
TU1627981 lncRNA downstream 19325 14275420 ~ 14275693 (-) True G1422275
TU1627946 lncRNA downstream 24955 14269448 ~ 14270063 (-) False G1422265
TU1628004 lncRNA upstream 2819 14346602 ~ 14346891 (-) True G1422293
TU1628005 lncRNA upstream 15577 14359360 ~ 14359744 (-) True G1422294
TU1628539 lncRNA upstream 35618 14379401 ~ 14380060 (-) True LOC110493419
TU1628544 lncRNA upstream 43910 14387693 ~ 14390580 (-) True G1422710
TU1628551 lncRNA upstream 68768 14412551 ~ 14424933 (-) False G1422716
XM_036947973.1 mRNA downstream 5859 14275862 ~ 14289159 (-) False LOC110485493
XM_036947976.1 mRNA downstream 5859 14275862 ~ 14289159 (-) False LOC110485493
XM_036947977.1 mRNA downstream 5859 14275862 ~ 14289159 (-) False LOC110485493
XM_036947979.1 mRNA downstream 5859 14282475 ~ 14289159 (-) False LOC110485493
XM_036947980.1 mRNA downstream 5859 14282475 ~ 14289159 (-) False LOC110485493
XM_036948126.1 mRNA upstream 3576 14347359 ~ 14371087 (-) False LOC110495053
XM_036948127.1 mRNA upstream 8823 14352606 ~ 14371087 (-) False LOC110495053
XM_021567675.2 mRNA upstream 35506 14379289 ~ 14382571 (-) False LOC110493419
XM_036947994.1 mRNA upstream 115555 14459338 ~ 14502251 (-) False LOC110485503
XM_036947993.1 mRNA upstream 115555 14459338 ~ 14503012 (-) False LOC110485503
TU1627976 other downstream 6005 14287166 ~ 14289013 (-) False LOC110485493
TU1627977 other downstream 6005 14287166 ~ 14289013 (-) False LOC110485493
TU1627978 other downstream 6005 14287166 ~ 14289013 (-) False LOC110485493
TU1627979 other downstream 6005 14287166 ~ 14289013 (-) True LOC110485493
TU1627971 other downstream 17385 14275913 ~ 14277633 (-) False LOC110485493
TU1628608 other upstream 247683 14591466 ~ 14592594 (-) True G1422757
TU1628669 other upstream 421748 14765531 ~ 14768638 (-) True G1422796
TU1628810 other upstream 582582 14926365 ~ 15353090 (-) False G1422891
TU1628852 other upstream 663056 15006839 ~ 15247342 (-) True LOC118940320
TU1628844 other upstream 990095 15333878 ~ 15334891 (-) True G1422897

Expression Profile