RNA id: XM_036947994.1


Basic Information

Item Value
RNA id XM_036947994.1
length 4659
RNA type mRNA
GC content 0.48
exon number 22
gene id LOC110485503
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 14459338 ~ 14506937 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTCTTGAACTGAAATATAAACCACACGTTGAGACAGCCGGTAAACTGTTTCTCCGTAAAAGTCTACCTATTGTCCGTAACAACGTTTCAATGCGGTAGGATAATGATATCGTCACCCCTAGAGTCGACAATGGTTCGTTGCCGCTGTTCAACATGCTGATGTATTTTgtaacagtagagagagagacggatctACTGCGGCGGCACTGCAGGTTTGAGCTTGAACGGGTTTCGCAAGTTACGAAGGGGgtAGTTTTTGCAACACTATGCTAGGAGAGTGGAGAGGCGGGACTAAGAAGACAAGTGTGTGACCCTTCTCTGTGATTGGTGGACAGAGATTGATGGTTGACAGACGGACGGATAAAGAGAACGGGACAGACcgcagagaggagagacggggagagagagatggctcaCAGTGTCAACTTTGACCTGACTGCTGATCACATGGAGGCTGGCCTGGAGAGCCCAGCGGATGAAGAGGGGGTCCATGACTCCTTTAACCAGCTGATAGAGGATCAGAGACAGGAAGCCTTGGAGCTGCAGGAACTACAGAGAGACCTGGACGAGGAGGAACGAGACAGTGTAGCGTACCTGTCCAGCCCTGGTCAGGAGATATGGCGTGGGAGCccggggaggggtgaggaggaaggggggggacAGTTAGACCCCCTTCTAGAGGAACGCTGGTCCTCCGCCACCCTCAAAGTCCTCTCCTCCATGCCCAGCCGCACCATCGgtcGTAGTCGAGGTGCTATCATCTCTCAGTACTATAACAGGACCATGAAGTTGAGAAGACGCAGACAGAGCAGGCCTTCCATAAAGGACTTTTCCCGCTCCGCACGGCCCAGTATCCGTGGTTACGGCATGGAGACAGACTGCATGGAGACCGAGGGCGTGGATGAGGAGGGGCGTAAGCGTGACCAACTGGTCAACAACCTTCAGAACCTCTCTCTGAGTGACCGGGTCAGGATGCTGCGAGCCATGCCTCTCTCTGTGGCAGAGAAGAGTGAACTAAGgaggtTGGCTGACAGGAAGGGTCGACGCTCCAAtcacagtcagatcccctgttgcaGCCAGCTCAAGTATCACATCATCATCgCTCTGAGACATAGCTGGTACagttgtctctccttcctccactccCTACAGCTGTGGCAGGTGGCGCTGAAGAGGGTGAGCGGTCGTTTCGGCACCGGCGTCCTCTCTTACTTCCTGTTCGTCAAGACCCTCCTCTTCTTCAACATCTTCCTGTTCCTGGTCACGGGTTTGTTGCTGGCCGTGCCCCAGGCAGTACACCCCCCCACATTAACCCAGGGACACGAAGCCTTCTCTGGGCTGGAGCTGCTCACTGGAGGGggttATTTCTCAGACTCAGTGATGTACTATGGTTACTATAGTAACTCTACCCTGTCTAAGGACTGTAGAGTCACTAGTAGCAGTATGGAGCAGCAGCCCAGTCCCTCTGTATCTAGAAGGACAATGGAAACAGACTGTGGAGTGAAGCCGTCCTACAACATGCCCCTGGCTTACTTCTTCACCATAGGACTGGCTTTCTTCATCACCTGCATCATCCTCGTCTACAGCATGTCCAAGTCGTTTGGTCAGAGTTTCCGTATCGACAAGTCACATGGTATCCTGGCGATGAAGGTGTTCTGTTCCTGGGACTTTAAAGTCATCAAGAAAACCTCCGTCAAACTCCGGTCTGAAAACATCTGCATTCAACTCAGGgagtTGTTAGAGGAGACGAGTCGTAAGCATGTCCAGAAGACTGCGTGTCAGAGAATAGGACGTGTGCTGGTACATGTTCTGGCCTGGTTCATCTGTATCGGCAGTACAGTGGCCTGTGTTCTAGCTCTCTACTACTTCTCTGAGTACATGCACAAGgACCTCCAGTACAGATCTCGTATTCCCACTAAGGACCCTCTCCTGAAGGAAGCCAGTCTGTTGGCCCTGCCAGTCGTAGTGTCTCTCATCAACCTCCTGCTCCCTGGCATCTTCAACGCTACTGCCTGGATGGAGGAGTACGACTCGCCCAGCGTAAACACATACATCGCCATCAGCAGGAACCTGATGTTGAAAGTGAGCGTGCTGGTAGTGCTGTGCTTCCATTGGCTGGGCCGGATCGCTTCTGACCCCCACAGCATCGGCCTGCAGTGCTGGGAGAGTTTTGTAGGACAAGAGCTGTACCGCTTCCTCCTCATGGACTTTATCTTTACCATACTGGACACCTTCTTTGGAGAGTTCCTCTGGAGGTTGTTTTCTCAGAGGGTGTTGAAGAGGAAAAGAAAGCCTGTGTTTGACATCTCCAGGAACGTGTTGGAACTCATCTACGGACAGACACTGGCCTGGTTGGGGGTGTTGTTCACTCCTCTGCTTCCTGCTGTACAGATCATCAAACTACTGCTTCTCTTCTACATGAAGCAGACTAGTGTGATGATGAACTGCCAGTCTCCTAGGAAGCCCTACAGGGCCAGTCAGATGAGCACCATCTTCATCACTCTCCTCTGCTGCCCTTCCTTCCTGGGGGCTGCTGTTTGTGTCAGCTACACTATGTGGAGtatcCGTCCGTCTGAGTCATGCGGTCCGTTCCGCAGCctgtccactatgttccagtcagGGAAGCTGTGGGTGAAGGAGTTGGAGACACACAACCCTAACCTGGCCTGGTTAGCCTGGGCTCACAGTTACATAGTGGAGAaccctctgtttctgttcctcgCTGCTGGGATCTTCCTgaTAGTGATTTACTTCAACACCCAGGTGGTggatggacagaggaagattatCAGTCTGCTGCAGGAGCAGATAGAAAACGAAGGGGAGGATAAGAAGTTCCTGATCACTCGTCTCCAGGCCATCCACCAGCAGAAACGACCCCTCTCCCCTCGCAGACTCACCAGTCAGGCCAGTcagGATTCCAACTGTTAGCATTCCAACTACTGAAAGGGCATTCTCTCCCTTCTCATTGGAGGGAATATCTCAGAAAATGTCCTGAATGGACCAACCTGGATGTAGCTCTCCTCTGCTGCCTCTGGGAAGAGTTGTTAAGGAATTCTTCAACTGGAAAACTATTCTCATAGGATGTCCTCTTTCCCAGGAAGCTGAGTTGGGACTGGGACTATAAAGGAATTTACTTCTTTACAATAACAAATCCCACAGACGCCAAAACGTGAATCTGATAGGATCCACACTCTTTCCCAGGAAGCTGGTCCTTATAAGGATTGGGAATAGGATTGGGACAAAGCAGGCTTTCCCTCTTCCAATAACAGACTACACTTCATAGGGAAAGACCACTGTCTTTATAGGATCTTACTATGGCCAAGCCATAGGCTACAACTTACTGTAACTAGGCAACATCGGAAAGACCACTGAGTTTTTATGATCTTACTATGGCCAGGCCATAGGCTACACCTTACTGTAACTAGGCTACATAGGAAAGACCACTGAGTTTTTATGATCTTACTATGGCCAAGCCATAGGCTACAACTTACTGTAACTAGGCAACATCGGAAAGACCACCGAGTTTTTATGATCTTACTATGGCCAGGCCATAGGCTCCACCTTACTGTAACTAGGCTACATAGGAAAGACCACTGAGTTTTTATGATCTTACTATGGCCAAGCCATAGGCTACAACTTACTGTAACTAGGCAACATCGGAAAGACCACCGAGTTTTTATGATCTTACTATGGCCAGGCCATAGGCTCCACCTTACTGTAACTAGGCAACATCGGAAAGACCACCGAGTTTTTATGATCTTACTATGGCCAGGCCATAGGCTCCACCTTACTGTAACTAGGCTACATAGGAAAGACCACTGAGTTTTTATGATCTTACTATGGCCAGGCCATAGGCTACACCTTACTGTTTATTCTTCATGTAAATGAAAGGACATGCCACTGTCACAAAACAACGGTTTATCGAAGCTCAATACTTTCAGCCAGGGATCTTTGTCCTTTTTTAAACTTGGATTGGAAGCCCTGGTCATGAGAGAGGATTGGAGGGGTGAAGAGGTGAGGAAACGAGACTGGGATACGGTGTGCTTGTAGGGACACAGAACGGAATGCGCTTTTTTAGAAACAATGTGTTTTTCCCCTCACAGGAACATATCAAATGCCAATAAGCTGCCAACAAAGGGTTAAAACAGTGGCGTTGTTAAGCAGGGTGAATTCTGTGAAATGTAGcatttgtatttttaaaaaaattgtaaatagtatgattttttaaaaattcCTTTTAGATGTTTTTATTGTATAAACTGGTATTTTGTCAACAGCCCTTTCATACCAACTGTGAACAGGTTATTTCTTTCCGTTTCTGATATAAAATGATTTTGATATGTTTTTAATGTTAATTGGTGGTCACCACACTGCTTCTGAAATGGCActcttccctacatagtgcacgacTTTATAGGGCGCTGGTCgtacgtagtgcactatgtagagaatagggtacctTTTTTGGACGCATCCTATGTTTACTGTCTCTGTAGGAAGAATCCACCTCTTAGTATCGGGCGATCTGATTGGTTCGTTCAAACAGGAAATGGTCTTAGAAGATCAACCACTGGATCAGTACGTTATTTGAATGTCTCTTATTGTTTTTAAGTTGTTTTGTTTGTATACTTTATACGTAAttaaatgtttttaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1628579 lncRNA downstream 10436 14448296 ~ 14448902 (-) True G1422733
TU1628578 lncRNA downstream 11448 14447026 ~ 14447890 (-) True G1422732
TU1628577 lncRNA downstream 13769 14444784 ~ 14445569 (-) True G1422731
TU1628575 lncRNA downstream 18569 14440016 ~ 14440769 (-) True G1422729
TU1628574 lncRNA downstream 21579 14437526 ~ 14437759 (-) True G1422728
TU1628591 lncRNA upstream 3530 14505781 ~ 14505995 (-) True G1422745
TU1628560 lncRNA upstream 62713 14564964 ~ 14565596 (-) True G1422718
TU1628559 lncRNA upstream 71239 14573490 ~ 14577709 (-) False G1422717
TU1628558 lncRNA upstream 72215 14574466 ~ 14577709 (-) True G1422717
TU1628606 lncRNA upstream 87481 14589732 ~ 14591384 (-) True G1422755
XM_021567675.2 mRNA downstream 76767 14379289 ~ 14382571 (-) False LOC110493419
XM_036948126.1 mRNA downstream 88251 14347359 ~ 14371087 (-) False LOC110495053
XM_036948127.1 mRNA downstream 88251 14352606 ~ 14371087 (-) False LOC110495053
XM_036948146.1 mRNA downstream 115371 14293700 ~ 14343967 (-) False LOC110485498
XM_036948147.1 mRNA downstream 115372 14293700 ~ 14343966 (-) False LOC110485498
NM_001160496.1 mRNA upstream 76120 14578371 ~ 14583460 (-) True tk1
XM_036948000.1 mRNA upstream 125476 14627727 ~ 14647511 (-) False ogal
XM_036948001.1 mRNA upstream 125476 14627727 ~ 14647511 (-) False ogal
XM_036948002.1 mRNA upstream 125476 14627727 ~ 14647511 (-) True ogal
XM_036947985.1 mRNA upstream 145591 14647842 ~ 14664571 (-) True LOC110518890
TU1627958 other downstream 115500 14295018 ~ 14343838 (-) False LOC110485498
TU1627955 other downstream 115555 14295018 ~ 14343783 (-) False LOC110485498
TU1627959 other downstream 115555 14295018 ~ 14343783 (-) False LOC110485498
TU1627960 other downstream 115740 14295018 ~ 14343598 (-) True LOC110485498
TU1627977 other downstream 170325 14287166 ~ 14289013 (-) False LOC110485493
TU1628608 other upstream 89215 14591466 ~ 14592594 (-) True G1422757
TU1628669 other upstream 263280 14765531 ~ 14768638 (-) True G1422796
TU1628810 other upstream 424114 14926365 ~ 15353090 (-) False G1422891
TU1628852 other upstream 504588 15006839 ~ 15247342 (-) True LOC118940320
TU1628844 other upstream 831627 15333878 ~ 15334891 (-) True G1422897

Expression Profile