RNA id: XM_036948126.1


Basic Information

Item Value
RNA id XM_036948126.1
length 6372
RNA type mRNA
GC content 0.46
exon number 9
gene id LOC110495053
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 14323005 ~ 14371087 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGCGCGTCATGACGGCTACCCGGAACACATAGAGATTGGAAGCCACGTTGACAACGAAGTGGTGTTTTGTTTCATTCCAAAACCGGTGGAATAACGGTAACTGCACCGGTGTGTCTGTCCAGCGGCCAAAGGGGTTGAAAATCGTACAGAAGGACAAGCCACTTCACCGGAAAGATGAGTGTAGGATTCATCGGAGCCGGCCAGCTGGCTCACGCGCTGGTGAAAGGGTTCACATCTGCGGgtgTAATAGCTACTCAGAGAATCATAGCCAGTTCTCCAGATACTGATCTGCCTACTGTTGCTGGCCTGAGGaAAATGGGTGCTATCCTCACCACCAGTAACAAGGAGGTGGTGAACAAGAGTGATGTCCTGTTCCTGGCAGTCAAACCCCACATCATCCCCTTTGTGCTGGATGAGATTGGACCAGACATCGAGGACAGACACCTTATAGTGTCCTGTGCTGCAGGAGTCACCATCAGCTCTATAGAGAAGAAGCTGCTTCAGTACCGTCCGTTCCCCAAGGTGATGAGGTGTATGACCAACACCCCCGTCGTGGTGAGAGAGGGAGCTACAGTCTACGCTACAGGaacacatgctgaggtGGAGGATGGTAAGTTGTTGGAACAGCTGATGGCCAGTGTTGGGTTCTGTacagaggtggaggaggaccTTATCGATGCCGTCACCGGCCTCAGTGGCAGCGGCCCCGCCTACGCGTTCACAGCTCTGGATGCCCTAGCCGATGGAGGGGTGAAGATGGGTCTACCCAGGAGACTAGCGGTCAGACTGGGAGCTCAGGCACTACTGGGAGCAGCTAAGATGTTGTTGGACTCTGAGCTGCACCCTGGCCAGCTGAAGGACAACGTGTGTTCCCCTGGGGGAGCCACCATCCACGCCCTGCACGTGATGGAGAGTGGCGGATTCCGCAGTCTGCTCATCAACGCCGTGGAGGCTTCTTGTATCAGGACacggGAGCTGCAGTTCCTAGCGGACCAGGAGCGCATCTCCCCGGCAGCCATTAAGAAGACCACCCTGGACAAGGTCCTGCAGCAGCCTGGGGTCAGCCAGGGGTCAGGGGCCAACGGCAAGCCAGGACTCAGCCTCAGGAGAAACCCCCCAGGACCTGTCAAGAAGAACAACTGagattgagacacacacacaccacctataACACCAGGAATCCGCGTCAGGAGAAACCCCCCAGGACCTGTCAAGAAGAACAGCGATGGATGGACAAACAcatacactctctttctctcaaaatTTGTAAATGCAGCTTGCACAGACCCATAGCCTTGTCTGACAGGGAGTCCGTGTACACACACTTGAACAGAAATGCATGTACAACATGCCGCCTGTCTACCTTGTCTTCAGTCTGTCTGAGGATGTGTGTCTCCGCGGTGATAACGACCCAATGGGCCAAAACATCAGTGAATATTTCAGATAGAAATGCAATGCATAGAGCTGACATGATTCCTTATTCTGCATGACAGAGGAATTCATAGAATCTGTTCTTTTCAATGCATTTCTTTCTGAGCGTTTTCTTTTTAATGTTGCCCCTGCAGCCGAAGCAGGCAACAGATGGCTTCAGTGATGTATTTTTTTGCCTGATgactcaaactgaattcttcCCACTGCTCTGTTCACTGCAAACGTTGAAGTCGTTTGTGGTGACGTCATAATGAGGGATGTTGTACAAAAGTGATCAGCGATTGGATCACCTCGAACCAATCAGAGCATCAAAGCCAATGACAATTTTTTTAAAAAAACACCTCTTTACTCACGTGTGCTTTgactctggcccaacccatttGTTTCTGGGACCAATCGGAACCTTTGTGTTCAGGAAAACCTGTCAGGGGCGGgatactcagatccagactcatggCGGAGAATTAATGCTAGTGGCCTAGCGTTTTCACGGGAGCAAGGCGTTTGGGTACCTAGGCAAGCCATTTCTAAGGtagtgtcccaaattgcaccctattttcCCCCTCCCCAATAggggtcaaaggtagtgcactataaaggaaataggctgccatttgggatttaCACCAAGTGTACTATACAGACAGTTACAATGTATTTTCTATGAAGCCATATCACGCCATGAAAAGCCTTTCATTGGGCTTGTTGTGATTTTCTTGTCGTTATTCTTGACCtacagtgttattttatggactGACTGAACAACAACTGTTTTgagtttttgttttttacatatTCTATTGTCCGTATGTTGTGGTCACCATCAGGACAAAAAATAAACACTAGCCACCAGACGAGTCAACACTAGCCACCAGACAAGTGAACACTAGCCACCAGACAAGTGAACACTAGCCACCAGACGAGTGAACACTAGCCACCAGACAAGTGAACACTATCCACCAGACAAGTGAACACTAGCCACCAGACAAGTGAACACTAGCCACCAGACAAATAAACACTAGCCACCAGACAAATAAACACTAGCCACCAGACAAATAAACACTAGCCACCAGACAAATAAACACTAGCCACCAGACAAATGAACACTAGCCCCCAGACAAATGAACACTAGCCCCCAGACAAATGAACACTAGCCACCAGACAAATGAACACTAGCCACCAGACAAATGAACACTAGCCACCAGACAAATGAACACTAGCCACCAGACAAATGAACACTAGCCACCAGACAAAAAACACTAGCCACCAGACAAATGAACACTAGCCACCAGACAAATAAACACTAGCCACCAGACAAATAAACACTAGCCACCAGACAAATGAACACTAGCCACCAGACAAATTAACAGTAGCCACCAGACAAGTGAACAGTAGCCACCAGACAAATGAACACTAGCCACTAGTAATCTGCATAGATTACCAGAACTAAACCAGACCTGGAGACGTGTTCAACATCTCAGTAACCACAGCAACGTGATGTAACAATCTGATCATCTGCATAGATTACCAGAACTAAACCATACCTGGAGACGTGTTCAACATCTCAGTAACCACAGCAACGTGATGTAACAATCTGATCATCTGCATAGATTACCAGAACTAAACCATACCTGGAGACGTGTTCAACATCTCAGTAACCACAGCAACGTGATGTAACAATCTGATCATCTGCATAGATTACCAGAACTAAACCAGACCTGGAGACATGTTCAACATCTCAGTAACCACAGCAACGTGATGTAACAATCTGATCATCTGCATAGATTACCAGAACTAAACCAGACCTGGAGACATGTTCAACATCTCAGTAACCACAGCAACGTGATGTAACAATCTGATCATCTGCATAGATTACCAGAACTAAACCAGACCTGGAGACGTGTTCAACATCTCAGTAACCACAGCAACGTGATGTAACAATCTGATCATCTGCATAGATTACCAGAACTAAACCAGACCTGGAGACATGTTCAACATCTCAGTAACCACAGCAACGTGATGTAACAATCTGATCATCTGCATAGATTACCAGAACTAAACCAGACCTGGAGACGTGTTCAACATCTCAGTAACCACAGCAACGTGATGTAACAATCTGATCATCTGCATAGATTACCAGAACTAAACCAGACCTGGAGACATGTTCAACATCTCAGTAACCACAGCAACGTGATGTAACAATCTGATCATCTGCATAGATTACCAGAACTAAACCAGACCTGGAGACGTGTTCAACATCTCAGTAACCACAGCAACGTGATGTAACAATCTGATCATCTGCATAGATTACCAGAACTAAACCAGACCTGGAGACATGTTCAACATCTCAGTAACCACAGCAACGTGATGTAACAATCTGATCATCTGCATAGATTACCAGAACTAAACCAGACCTGGAGACATGTTCAACATCTCAGTAACCACAGCAACGTGATGTAACAATCTGATCATCTGCATAGATTACCAGAACTAAACCAGACCTGGAGACATGTTCAACATCTCAGTAACCACAGCAACGTGATGTAACAATCTGATCATCTGCATAGATTACCAGAACTAAACCAGACCTGGAGACATGTTCAACATCTCAGTAACCACAGCAACGTGATGTAACAATCTGATCATCTGCATAGATTACCAGAACTAAACCATACCTGGAGACATGTTCAACATCTCAGTAACCACAGCAACGTGATGTAACAATCTGATCATCTGCATAGATTACCAGAACTAAACCAGACCTGGAGACATGTTCAACATCTCAGTAACCACAGCAACGTGATGTAACAATCTGATCATCTGCATAGATTACCAGAACTAAACCAGACCTGGAGACGTGTTCAACATCTCAGTAACCACAGCAACGTGATGTAACAATCTGATCATCTGCATAGATTACCAGAACTAAACCAGACCTGGAGACATGTTCAACATCTCAGTAACCACAGCAACGTGATGTAACAATCTGATCATCTGCATAGATTACCAGAACTAAACCAGACCTGGAGACGTGTTCAACATCTCAGTAACCACAGCAACGTGATGTAACAATCTGATCATCTGCATAGATTACCAGAACTAAACCAGACCTGGAGACATGTTCAACATCTCAGTAACCACAGCAACGTGATGTAACAATCTGATCATCTGCATAGATTACCAGAACTAAACCAGACCTGGAGACATGTTCAACATCTCAGTAACCACAGCAACGTGATGTAACAATCTGATCATCTGCATAGATTACCAGAACTAAACCAGACCTGGAGACATGTTCAACATCTCAGTAACCACAGCAACGTGATGTAACAATCTGATCATCTGCATAGATTACCAGAACTAAACCAGACCTGGAGACATGTTCAACATCTCAGTAACCACAGCAACGTGATGTAACAATCTGATCATCTGCATAGATTACCAGAACTAAACCAGACCTGGAGACATGTTCAACATCTCAGTAACCACAGCAACGTGATGTAACAATCTGATCATCTGCAGACATATTCTGTCTATCTGTTAAGTGAGGAAGACTCATCCTTCAGTGAAGAAGATGCTACCATGTTATTATGTCTCTCTGAAAGGGAACGTGGGATTTAACCTTCCAGTATATTTACTTTATCTTCGTCGTCAGTCACTTTAACATGGAACTATTCATTTGTATGTTTTGATACTGATTAGGAAAATGTGTATGGTCAATTACCAAAGGCTCTGTCCTACATTGTATATTGAGTTAGCATATGTTAGTGAAAGGAGGCAAGTTGAGGAAGCTACCTACCATAGAGTATTGGGATGCAGCCCAGCTCTAGCTGGTCAGTTGTTTCAACTCAGCATCTGGAGACACAGGGGAAGTCACAGTatgtggacgtgtgtgtgtgtccccctgtTGCCTTGACAAGTACAGTTCTACAGATGTCATGGCCCGTCATCGTCACATACTCAACGGGGGACAGACGGGGTAAAGTTTCAACCCCAGTGCCCCCGCGGATACAAATAGACATTTGTGAAGAGTGGCTGTGTACCAAAtgtaccaccctattccctacatagtgctctgAGGGTCCTGGTCCAGTGTTGTCTACTATACAGGGAATGTGGTGGCATTTGGGAGTCAGGATGCAGACAGTTTTTCCCTCGCTGCCATAGATACGGACTCTGATTGGTTGGCGAGGGAGGAAACGAGCCGCCGGTTTTAGAACCCTGTCGGCAATCTGAAGGAGGTGGGTGACATGTCAGGTCCAGGAGAGGTTCAGGTCAGGGTGGATGtggcattctattccctatatagtgcaacaCTTCTGACTAGGACCCATAGGGCTGTGGtcagaaagtagtgcactaggaaaTGCGGGTGCCAATGAGCATGCACAGACTGGCTCATGAGGTTACCCAACGTCAACATCTACTTTTTGGTGGCACATTGCTATTTAGATTGTAATGGGGGTGACCCCCAGCCCTCCTGCAATTCAAATCATGGTTCATTTcctgtcttttttttctctccttttgtACTCTACTTGTAAAGTCAAACTAAAAGAAAGTCATCCAAGTTAATTTTACTTCTACAATAACTTTTATATTACCTTCAACAATATGACGGGACACAGACCAATTGTTTGTTTGCCTCTGAAATGTGACTGCAGAAGACCATGTTGTGTGAGAGTTGTCCTCCACGGCGTGTCCATTGTAAAGTCTGCAGTTTGATTAGACGACATACTTTACGAGGCGCCAGGTGTAGAAGGTAATGACAATATGCAGGAAAACCGCGGAGACAAGCGGCTGTGGAGATAAATGTTCCCCAATCACAGCGGAACAATACTAACCGCTTGCAGCCTACAGGATTACCTAGATTACGGTTAAAAGTGGCCTTtgattaaagtgtgtgtgtaaaaaaataaaaataaaggccTTGATTAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1628004 lncRNA downstream 468 14346602 ~ 14346891 (-) True G1422293
TU1628001 lncRNA downstream 16654 14330116 ~ 14330705 (-) True G1422290
TU1627985 lncRNA downstream 45200 14298628 ~ 14302159 (-) True G1422279
TU1627980 lncRNA downstream 60302 14286354 ~ 14287057 (-) False LOC110485493
TU1627981 lncRNA downstream 71666 14275420 ~ 14275693 (-) True G1422275
TU1628539 lncRNA upstream 8314 14379401 ~ 14380060 (-) True LOC110493419
TU1628544 lncRNA upstream 16606 14387693 ~ 14390580 (-) True G1422710
TU1628551 lncRNA upstream 41464 14412551 ~ 14424933 (-) False G1422716
TU1628552 lncRNA upstream 41464 14412551 ~ 14414895 (-) True G1422716
TU1628574 lncRNA upstream 66439 14437526 ~ 14437759 (-) True G1422728
XM_036948146.1 mRNA downstream 3392 14293700 ~ 14343967 (-) False LOC110485498
XM_036948147.1 mRNA downstream 3393 14293700 ~ 14343966 (-) False LOC110485498
XM_036947973.1 mRNA downstream 58200 14275862 ~ 14289159 (-) False LOC110485493
XM_021567675.2 mRNA upstream 8202 14379289 ~ 14382571 (-) False LOC110493419
XM_036947994.1 mRNA upstream 88251 14459338 ~ 14502251 (-) False LOC110485503
XM_036947993.1 mRNA upstream 88251 14459338 ~ 14503012 (-) False LOC110485503
XM_036947995.1 mRNA upstream 88251 14459338 ~ 14506937 (-) True LOC110485503
NM_001160496.1 mRNA upstream 207284 14578371 ~ 14583460 (-) True tk1
TU1627958 other downstream 3521 14295018 ~ 14343838 (-) False LOC110485498
TU1627955 other downstream 3576 14295018 ~ 14343783 (-) False LOC110485498
TU1627959 other downstream 3576 14295018 ~ 14343783 (-) False LOC110485498
TU1627960 other downstream 3761 14295018 ~ 14343598 (-) True LOC110485498
TU1627976 other downstream 58346 14287166 ~ 14289013 (-) False LOC110485493
TU1628608 other upstream 220379 14591466 ~ 14592594 (-) True G1422757
TU1628669 other upstream 394444 14765531 ~ 14768638 (-) True G1422796
TU1628810 other upstream 555278 14926365 ~ 15353090 (-) False G1422891
TU1628852 other upstream 635752 15006839 ~ 15247342 (-) True LOC118940320
TU1628844 other upstream 962791 15333878 ~ 15334891 (-) True G1422897

Expression Profile