LOC110493419 (LOC106564347)


Basic Information

Item Value
gene id LOC110493419
gene name LOC106564347
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 14379289 ~ 14382571 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021567675.2
gagagagagagagagagagagagagagagagagagagagaggtggttttTGGGCCACATGGCTTGGTTGTCAGTGAGAGTGTGTACtgcaacagacagacacacagagagccaaAGTGTGGTCGTGGACCTAAGGACTTCAAACATGCCCATCGGAAGACAAACCAGGTGACTGGACCGGATTATATTGGATCATTACATGATATTACATACTGGGATTATGACAAAATGACGATAACCCAAAGGTAACTCCCAGATGAGAATGTTTACTGTCCTGTTCCGTCCAAGAGAAGATAAGCTCTGACAGAGACTGAAAGAGTCCTCAGAAGAGGAACAGGTTGGCCGGCTCTTTTGAATTCAGCAGCTGGATGTAAATACTGGATTTTAATGAATGTCCAGTATTCAAAGACTCAAGAAATACATATATTATGTGTCAATTTTCTAAGGATTCAAATACGTATCAGAGGActgaagaaatatatatatataaggacaCGAGAAATATCTGGACTCAAGAAGATATTCTGACTACACAAGAGTGTGTCCTTTAGATGTGTCTGAACAGTGGATCAGTCCGAGCTTCTCTACACACACGTGATCCAGAGAGCGTTTCACCCACGAGGGACGGCTGCGTTCTgacctgttttctttgtgacatACCGTGAGTCGCCGACACATAAATAGAGACCCAGAAAATACCCAGAGTCCCTAGCGTCCCGGCAGAAACAGCAGAGCGAGAAGCAACCACGCACACTCACGCACAAACACACCTGGTTCATGAGTCGATACATTCACGACTTGCTTTGTGTCGTGACGTTTTCCACTTCATCCTACTCCAGTATAGGACAGACACCCCCTTAACCCACAAACTCTcccctctgacctctaacccttgacctctgacccctgatcTCTGAACCCTGACATCTGAACCCTGACTCCTGACTATGAGCCCTCAGGGGGGTCAGTACCTCAACAAGGCAGCGGTCTTCTCCTCGCTTGGCGCCGCCCGCCTCTCCCAGCTGGCCCTGGGCTGCTCAGTGGTCGCCATGGTGAGCCACAGTGCGGGCTACAGCGGAGGGTCGTACGGCGTGTTCTGCATGGCGGTGTGGTGCGCGTGCTTCGGCATGACGACAGTGGTGTTCTTCCTGGACGCCACCCGTCTCCACGCCTGTCTGCCCGTCTCCTGGGATAACCTGACGGTGGCATTCGCCGCCCTGGCGACCCTCATgtaTGTGACAGCCTCGGTGGTTTACCCAGTCTACTTTGTCAGAGCAGAGTGCCCCTACGGAGGCTGTGAGGTCCGGAACTTCCGCATCGCCGTCACTGTCTGCTCCATCGCCGGCTCCCTGGCCTACGGCGCCGAGGTGATCCTCTCGCGGGCCAAACCAGGCCGGGTCGTGGGCTACATGGCAACCGTCTCCGGCCTCCTCAAGGTCGTCCAGGGCTTCGTGGCGTGCATTATCTTCGGAGCGCTGGCGAACGGGACCGAGTATTCACGTCACGTAGCGACGATTTACTGCGTGGTCGTCTACGCCGTCTGCTTCGCCATGACGACCGTCGTGGTTATATTGACCGTGTCCGGTCGCACCGGGTGTCTGAAGTTACCGTTCGACcggtttgttgttgtttacacgcTCTTGGCGGTTCTCCTCTACCTCAGCGCCTCCGTCGTCTGGCCCGTGTTCTGCTTCGACAGGAAGTACGGATCGCCAGAGCGCCCGTCGTCATGCCCGCGGGGCCGGTGTCCGTGGGATAGTAAGGTGGTCGTTGCAGTGTTTAGCTTCGTCAACCTGGCGCTGTACGTCGCCGACCTGGTGTACTCACAACGGATACGTTTCGTAACCCAGCAACCACGGGTGTAGAGCAGAATGGGACGGAACAGAACAGAATGGGATACAACGTTATTGTACAGCCAGAAGTGAACATTCACACAAAGACAATATGCTTCGTCTTCCCCCACCAACCACTGGTGAGGTGTAGAATAGGAGGAGGAGTAACCACTGAGTCAGAGAGAAAGGGGCGTCGACTATTCATCAATCCATCACattttatttataaagccatttttacatcagcagatgtcacaaagtgtttatacagaaactcagcctaaaaccccaaacagcaagatgcagatgtagaagcacggtggctaggaaaaactccctagaaaggcaggaacctaggaagaaacctagagaggaaccaggctatgaggggtcagtcctcttctggctgtgccgggtggagattataacagaacaaggCCATTAAGGCTTTTGATTGAGTACATCACCTACTTGCATGAATGTGTCACCCTCTTTTAATGATGGGCTTATATCTCACAACCATGTAACCATTGAGATATAAAATATTCTTATTCAGTGTTTATGCACATAACAGCCAGCTAACCCTGCTACGACACCCCATTCGGGTGACACTCAGTGACTGACCCCTCTCACACCACTCTAGATATGATGGGGGATGGATGACATCACTAAACATGACATCACTGACTAACacaatccctctcctctccttctgacTAGCCTAACACACCCTACCAGACCACACCATTGCAATCTCTAGCTAAATCCCTATTATGCTGCCTCCCCCACCAACTCCCTGCCCCTCGAGCCCAGACTACCACCACTCTATCTGGGTGGAAGATTTGAGAGAGTAGCTCTACTTCACCAACCCATGACACACTCCACTCTCCGTTTCCCCAGTACCAGCCACCCCCTGCCCCTCTACCCCCAgaaccccccctctcttcctgggGTGTGAGGGGAGAGTGTGGCCTCTGTAGCAGCCAGCTGGTTGGGGCTTCTCTGTCAGCAGAACCAGAAGGAGAGGAACAGCACAGAATCTGACCAGCTTATCACACTCTCACTGGGGTCTGCACATTTACATTGagtcccccaccctctctctgtctctctctctgtctctctctctgtctcttactgtctctctctctctctctctctctctctctctctctctctctctttctctctctctctgtctctctgccccc
>TU1628539
CATTAAGGCTTTTGATTGAGTACATCACCTACTTGCATGAATGTGTCACCCTCTTTTAATGATGGGCTTATATCTCACAACCATGTAACCATTGAGATATAAAATATTCTTATTCAGTGTTTATGCACATAACAGCCAGCTAACCCTGCTACGACACCCCATTCGGGTGACACTCAGTGACTGACCCCTCTCACACCACTCTAGATATGATGGGGGATGGATGACATCACTAAACATGACATCACTGACTAACacaatccctctcctctccttctgacTAGCCTAACACACCCTACCAGACCACACCATTGCAATCTCTAGCTAAATCCCTATTATGCTGCCTCCCCCACCAACTCCCTGCCCCTCGAGCCCAGACTACCACCACTCTATCTGGGTGGAAGATTTGAGAGAGTAGCTCTACTTCACCAACCCATGACACACTCCACTCTCCGTTTCCCCAGTACCAGCCACCCCCTGCCCCTCTACCCCCAgaaccccccctctcttcctgggGTGTGAGGGGAGAGTGTGGCCTCTGTAGCAGCCAGCTGGTTGGGGCTTCTCTGTCAGCAGAACCAGAAGGAGAGGAACAGCACAGAATCTGACCAGCTTATCACACTCTCACTGGGGTCTGCACATTTACATTGagtcccccaccct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021567675.2 False 3042 mRNA 0.52 2 14379289 14382571
TU1628539 True 660 lncRNA 0.50 1 14379401 14380060

Neighbor

gene id symbol gene type direction distance location
LOC110495053 LOC106564349 coding downstream 8202 14323005 ~ 14371087 (-)
LOC110485498 LOC106592261 coding downstream 35322 14293700 ~ 14343967 (-)
LOC110485493 LOC106592221 coding downstream 90130 14275862 ~ 14289159 (-)
LOC110487229 LOC106591833 coding downstream 104094 14270156 ~ 14275195 (-)
LOC118940023 pcy2 coding downstream 131841 14230921 ~ 14247448 (-)
LOC110485503 LOC106593098 coding upstream 76767 14459338 ~ 14506937 (-)
tk1 kith coding upstream 195800 14578371 ~ 14583460 (-)
ogal LOC106564358 coding upstream 245156 14627727 ~ 14647511 (-)
LOC110518890 LOC106591554 coding upstream 265271 14647842 ~ 14664571 (-)
LOC110494998 LOC106596103 coding upstream 525956 14908527 ~ 15433659 (-)
G1422294 NA non-coding downstream 19545 14359360 ~ 14359744 (-)
G1422293 NA non-coding downstream 32398 14346602 ~ 14346891 (-)
G1422290 NA non-coding downstream 48584 14330116 ~ 14330705 (-)
G1422279 NA non-coding downstream 77130 14298628 ~ 14302159 (-)
G1422710 NA non-coding upstream 5122 14387693 ~ 14390580 (-)
G1422716 LOC106564348 non-coding upstream 29980 14412551 ~ 14424933 (-)
G1422728 NA non-coding upstream 54955 14437526 ~ 14437759 (-)
G1422729 LOC106591520 non-coding upstream 57445 14440016 ~ 14440769 (-)
G1422731 NA non-coding upstream 62213 14444784 ~ 14445569 (-)
LOC110485459 LOC106564320 other downstream 413952 13959793 ~ 13997078 (-)
LOC118940029 exosc1 other downstream 510618 13863439 ~ 13868827 (-)
G1422125 LOC106595916 other downstream 521039 13856876 ~ 13858250 (-)
G1422757 NA other upstream 208895 14591466 ~ 14592594 (-)
G1422796 NA other upstream 382960 14765531 ~ 14768638 (-)
G1422891 LOC106601621 other upstream 543794 14907317 ~ 15353090 (-)
LOC118940320 LOC106605908 other upstream 624268 15003526 ~ 15247342 (-)
G1422897 NA other upstream 951307 15333878 ~ 15334891 (-)

Expression


Co-expression Network