LOC118940324 (LOC106605911)


Basic Information

Item Value
gene id LOC118940324
gene name LOC106605911
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 15079435 ~ 15083786 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036949071.1
GTGTGATGTTGACTGTCACAGatatcctgttggagatggatcCTACGTCTGtgtcagagggggagagagtcacaCTGAGATGTAGAACCCAATGTACAGTCAGTCtcaaccccacctacatctggtacaagaacggacaaAGTCTGACCAACCCAATCACTAGTTATAACAGCCTGATCCTAGACCCAGTCAACAGTTATAACAGCCTGATCCTAGATCCTGTCAGCAGTGAGGATGCAGGGAACTACTCCTGTGCTGTAGAAGGCTTAGAGAGAATCCTCTCACCAGAAGAGACTCTCACTGTCAGATATGGTCCAAGGAAcacctcagtgtcagtcagtccttctggtgaaatagtggagggcagttcagtgactctgacctgcagcagtgatgccaacccacctgTGGACAAATACACCTGGTACAAGAAGAACGTAACCTCACCAAAAGCATCAGGACAGAGTTACAGCATCACTAACATCATctctgaggacagaggagaatatTACTGTGAGGCCCAGAATAGAAAAGGATCTATGAACTCTACAGCTCTGATGATCATTGTAGCAGGAAAACAGACCTCAGTTGTGACTGCAGCTGTAGGAATCATCATAGTGGTGCTTCTGGttctcatcctctgtctctctggattCATGTGGTTCAGGAGATCCACAGGAGGAAGTGATGCCACAGCAGACACACAGagtgTCCGTCCTGACTGTAACAGTGACACGTACACAGGTCTGAACATGAGGACCATGTCCCCTGACTACGACACTCTGATAAGTGTCCATCCTGACCCTAACAGTGATACGTACACACCTCTGAACATGAAGACCAGGTCACCAGAGTATGACACCCTggcaAATGTGAGGGGAATCTCCCACTGAAGAGAAGCAACAccgaacctggactgaagagaacaaCCACAGATTCTGGACTGAAGAGAAGcaccacagaacctggactgaagagaatcatcacagatcctggactgaagagaaccaccacagaacctggactgaagagaagcaccacagatcctggactgaagagaacaaccaacattgaacctggactgaagagaagaccacagatcctggactgaagagaacaaccaacattgaacctggactgaagagaagcaCCACAGAACCTGGACGGAAGAGAAGCACCACAGAACCTGGAtggaagagaaccaccacagatcctggactgaagagaagcaCCACAGATTCCGGACTGAAGAGAAGCACCAACATTgatcctggactgaagagaagcaccaacattgaacctggactgaagagaaccaccaacattgaacctggactgaagagaaccaccaacattgaacctggactgaagagaaccaccaacattgaacct

Function

NR:

description
B-cell receptor CD22-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036949071.1 True 1392 mRNA 0.48 8 15079435 15083786

Neighbor

gene id symbol gene type direction distance location
LOC118940320 LOC106605908 coding downstream 13953 15003526 ~ 15247342 (-)
LOC118940322 LOC106598058 coding downstream 110381 14954929 ~ 15014095 (-)
LOC110518890 LOC106591554 coding downstream 414864 14647842 ~ 14664571 (-)
ogal LOC106564358 coding downstream 431924 14627727 ~ 14647511 (-)
tk1 kith coding downstream 495975 14578371 ~ 14583460 (-)
LOC118940328 NA coding upstream 14747 15098533 ~ 15099673 (-)
LOC118940321 LOC106598058 coding upstream 17895 15101681 ~ 15112873 (-)
LOC118940091 LOC106591560 coding upstream 42737 15081145 ~ 15131434 (-)
LOC118940319 LOC106564328 coding upstream 49013 15132799 ~ 15237418 (-)
LOC118940325 LOC106598058 coding upstream 55940 15139726 ~ 15141814 (-)
G1422912 NA non-coding downstream 94 14985791 ~ 15079341 (-)
G1422939 NA non-coding downstream 7789 14976350 ~ 15071646 (-)
G1422935 NA non-coding downstream 125136 14953858 ~ 14954299 (-)
G1422908 NA non-coding downstream 130199 14924141 ~ 14949236 (-)
G1422960 NA non-coding upstream 2296 15086082 ~ 15133650 (-)
LOC110494998 LOC106596103 non-coding upstream 11812 14908527 ~ 15433659 (-)
G1422963 NA non-coding upstream 17493 15101279 ~ 15173836 (-)
G1422964 NA non-coding upstream 28119 15111905 ~ 15135352 (-)
G1422967 NA non-coding upstream 37198 15120984 ~ 15121373 (-)
G1422796 NA other downstream 310797 14765531 ~ 14768638 (-)
G1422757 NA other downstream 486841 14591466 ~ 14592594 (-)
LOC110485498 LOC106592261 other downstream 735597 14293700 ~ 14343967 (-)
LOC110485493 LOC106592221 other downstream 790422 14275862 ~ 14289159 (-)
LOC110485459 LOC106564320 other downstream 1114098 13959793 ~ 13997078 (-)
G1422897 NA other upstream 250092 15333878 ~ 15334891 (-)
G1422918 NA other upstream 299333 15383119 ~ 15405174 (-)
G1422920 LOC106591235 other upstream 313504 15397290 ~ 15413597 (-)
G1423112 NA other upstream 499909 15583695 ~ 15584093 (-)
G1423836 NA other upstream 724900 15808686 ~ 15831010 (-)

Expression


Co-expression Network