XLOC_033629


Basic Information

Item Value
gene id XLOC_033629
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 20911912 ~ 20915912 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00068570
TGCTCGGTTCAGGGTGCTagccaacaattttttttttttttttgtggactgGAATTTCATTGATGACTGAAAAAGAgacttgttatttaaaaaaaaagaaaagaaaaagactggaggacagtttttttttttttttttttttttcaatctctgGTATTGGAGATACAGCTCTACCACCACCTGCTGACTACATGGCTGAAGTTCACCTTTAGCTTGAAGTGATTGAGGCGCTACAAGACCGTCTGTTTGATCTTTGCTGTTCCAGATGAAGATGGAGGCTCTCCTGCTTCATCTCCATTTCCTCTTCATTTCCTGTCCTCCGCCTTCAGAAGAAAGTACCAGCGTGTGGAATCCAGACAGCACACGAAATGAAGACCGCACGATGAGGACAAGGAGAGCTGCAGTTTCCATATTCAGACTACTAAGAGGAAGAGGAGAGGACTGCGAATGCTGGAAACTCTGAACTATGAGATCTCCAACATGCACAGCATAGTTCTGCTGGAGCGCAGCCAGGGTTCACTTTACAAACACACCATCACTCAAATACACCTGCATACACACATTCGAGGATGAAATGATTACTTATACACCTACTGACATGGCAAACACAATCCCACTACACTTCATTCTGGCTGCCatgtaaataatgtatataatccAAACCCTTCTCCTTTTCTCTGTTGGGTTTTGAggattgtttctttctttttatttttgttgtcccTTCCCCCTTCCTCTCTTTTATGACATGCCTTAACAGTTGAGTTCTGCCTATGAAGGCACACTTAAAGACGTGTAAACAAAAGAAGTGTTAACATTCAGCGAGATTAGCTCTGACATAATAGTTTGTGATTTTATTTAAGAACCCCCTGAAACATTAATAACCTGCAAAATGATTATTATAACATTACAAATGACCTCGGGTGTGACTGGATGAGTATTCACAATGATGCAGCCCATCAGAACAACCATTTTTTGGATTTGTATTGTCAATATGAGAAGCAAAAGTAGTTACTGGGTCGCAGTTTGTTGTCGAACGTCTGTTGGTCTTTGATCTCAGAATAGAAGTGGGTGATCAGAAATAGTTTTGCTCATCTCTTTCAGCCTTTACTGAGCTAAAGATCAGAAGGGATGTGATTTGATATCATTATCTGTATAAGGTAGCAccctcttaaaggaacagttcacccaaatatgtaaattctgtcatcatccaaacttttgaacacaaaggaagatatactgaattacagccattgacttccattgtatttttaaaattcctACTATTGATGTCACTGGCTGTTTTTTTGCAACATTCTTTAggttatattgttttgtgttgaacagagaAAAGCAATTCATAAAAGGTTAGAACCATTTAAGTCTGAGTAAATGGtgtgaacattttcatttttgggtgtactatgcCTTTAAGATAAATAGAATTGTGTAATTTTGCAGGTCAGATTAAACTAGATGCCGAATGTCTTTGCTGGTATGCaaaatttcatgttttaaaatgttaacgATGATCAAAATACGCGTTTCATATATTTATTGATTCAGTCAGTATGAATGGCAAAAGTACTGCAGTAAGCCGTTTGTTCGTGTTAAAATCATCCGCTGAATTAAATTGGAAATGGCTCACTGTAAATCAGCACTGCATAATGAGAACTTGTCACACATATCTTAGGTGGATGTCTTCTAAAATTTGCTGTATAAAAAGGTCACAAACCATTTGACGATAATGTTTGAATATTCCTGGTGTAAATAGTTTTTGGGGTTTCTGGTTTGTTTGAAGAAAAGTAATAAATACTTAAAGAATAAA

Function

GO:

id name namespace
GO:0090085 regulation of protein deubiquitination biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00068570 True 1831 lncRNA 0.37 2 20911912 20915912

Neighbor

gene id symbol gene type direction distance location
XLOC_033628 NA coding upstream 3251 20869043 ~ 20908661 (+)
XLOC_033627 NA coding upstream 80342 20797002 ~ 20831570 (+)
XLOC_033626 tnfsf12 coding upstream 246573 20656942 ~ 20665339 (+)
XLOC_033625 sat2a coding upstream 260176 20645121 ~ 20651736 (+)
XLOC_033624 SAT2 coding upstream 275035 20629411 ~ 20636877 (+)
XLOC_033630 wrap53 coding downstream 2054 20917966 ~ 20939108 (+)
XLOC_033631 efnb3b coding downstream 49968 20965880 ~ 21089475 (+)
XLOC_033632 NA coding downstream 180214 21096126 ~ 21313684 (+)
XLOC_033633 dnah2 coding downstream 405405 21321317 ~ 21626580 (+)
XLOC_033634 kdm6ba coding downstream 716188 21632100 ~ 21778474 (+)
XLOC_033613 NA non-coding upstream 268999 20382065 ~ 20642913 (+)
XLOC_033618 NA non-coding upstream 394081 20511761 ~ 20517831 (+)
XLOC_033615 NA non-coding upstream 447105 20453126 ~ 20464807 (+)
XLOC_033636 NA non-coding downstream 904389 21820301 ~ 21831281 (+)
XLOC_033638 NA non-coding downstream 943306 21859218 ~ 21874346 (+)
XLOC_033645 NA non-coding downstream 1522535 22438447 ~ 22537335 (+)
XLOC_033649 BX649313.1 non-coding downstream 1716137 22632049 ~ 22655452 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G68602 NA non-coding CI01000012 null 437262 ~ 437540 (-)