XLOC_033631 (efnb3b)


Basic Information

Item Value
gene id XLOC_033631
gene name efnb3b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 20965880 ~ 21089475 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00065797
TTGGTGTATGCGGAATTATCTCGGAAGCAAGCAGGAACATCCAGCAGGGGAACGAAAGACCCAGCATCAACATGTTCTTCTGAAGAGATCTTTCCAAACCATCATCCATCTGCCATCACATTCCCGTCCTAATTAGTCGGGAATGAAGTAGGAGTGAAAAGGAAATGGAAAACATAGGTGCATCCTAAAAAAAACGTGAAGGAAAAAGAACTGTTTATTTGGAAAAGTAAACTCAACAGCAACAAAGCGGCTGTGGGAATTGATTTTGAGTTTTGTCCACGAGCTGCATTTTCCTAAAGAGCTGGAATTGTGCTGTTAAATCCACTGACTGCACCTTTGTTTAATCTGTCCACCGCTGTGTGTTTTAGTAGATACCCATGCAGGCTCCCAAAACACGTTGTTCCTGATCACACTGACGGATTCACCTGAAGCGCACACGCTTTGTTCCGAGTCCAGAGATCTCCAGCctctgggagagagagagagagagagagagagagagtatccCGCACACGGCTTTGATGGGAGTAAATAGACGGAATTCGGGATTTCAAATGGCGAGTCGGGGCTGTGTAAATGGATTGGGAATTCTCCTGATATTCTTAGTGGATTTACTCGGGATCACGGCGACCAACATGGAGCCCATCTACTGGAATTCCTTGAACAAAAGGTTTAGTGACGATAAGGGTTATGTCCTGTACCCTCAAATTGGTGATCGTCTGGATCTCATTTGCCCGTCTTCAGATCCGCCTGGCCCTCGTGCCCCTGCTGATTATGAGTACTATAAACTGTACCTGGTTTCGTCTCGGGAGCAGGCAGACAGGTGTGAAGTGACCGGAGCCCCGAACCTGCTTCTCACCTGCGATAAACCCAACAGCGACATGCGCTTCACCATCAAGTTTCAGGAGTACTCGCCAAACCTGTGGGGCCACGAGTTTAAGACCAACCACGACTACTTCATCATTGCTACATCAGACGGGACGCGTCAGGGGCTGGAGAGCATGAGAGGAGGAGTTTGCGCTACACAGGGCATGAAGGTGGTGCTGAAAGTGGGACAGAGTCCATATGGTCTGCCAGCCAAATCTCCAAAACCTGACTCCGCGGGCCGTATCAACAACCCAAACCCAGGTACTGGAAACAGCACCCATCCGCAAATTCCCCCTAGAGGTTCTGGTGGTGAAAACGGCCCCCTTCCTGCCTCCAACATCGCAGTTATCGCCGGTGCGGCTGGCGGTTCAGCATTCCTCCTGCTCGTCACTGCTGTGATCTGCGTGGTGTGCTACCGACGCCGACACGCCAAACATTCCGAATCGCACCATCCTCCCCTGTCCCTCTCCTCTCTGACCTCACCCAAACGGGGATGTGGCGGGGGCGTAGGGGGCGGCAACAACAACGGCTCAGAGCCTAGCGACATCATCATCCCACTGCGGACTTCTGACTCCGCCTACTGCCCGCACTACGAGAAAGTGAGCGGGGACTACGGCCATCCGGTCTACATCGTACAGGAGATGCCTCCTCAGAGTCCCGCCAACATCTATTATAAAGTATGAGAACCGGAGACCACCTTACTGAAAACATCTGCTATAACCACACCCACCTTAAACGACTACCTAAACCCCGCCTCCAAGCCCCGCCCCTCACCGTCTGCATCCCCGTAGATCAGATACCTTTACCTTCACACACATTTCTCCGATACGCTGACCACTCATGGTCGAGTGAGTCTGATTGTGTGTGCTATCGTTCCTCAAAACTTTCCCCTACTTTGGCCTTTTGTTGGAGAGAGGATGTCTTAATGTAAAGGTGTCCTCCTTTCTGACGTCCCACATGGGGAAAAGTTCAAAAATATACAAGACCTCCTGGaggactgaaaaaaaaataacattatctCCTTTTTAGGGGGCGCTCTGGAGCACAAGcatcaaaactttttttctgatgtaTTTGCGAGACtcttaaaag

Function

symbol description
efnb3b Predicted to enable ephrin receptor binding activity. Acts upstream of or within rhombomere boundary formation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in several structures, including axis; central nervous system; forebrain neural keel; immature eye; and sensory system. Orthologous to human EFNB3 (ephrin B3).

GO:

id name namespace
GO:0021654 rhombomere boundary formation biological_process
GO:0048013 ephrin receptor signaling pathway biological_process
GO:0007411 axon guidance biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0046875 ephrin receptor binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-010618-3 Predicted to enable ephrin receptor binding activity. Acts upstream of or within rhombomere boundary formation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in several structures, including axis; central nervous system; forebrain neural keel; immature eye; and sensory system. Orthologous to human EFNB3 (ephrin B3).

Ensembl:

ensembl_id ENSDARG00000042277

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00065797 True 1959 mRNA 0.50 5 20965880 21089475

Neighbor

gene id symbol gene type direction distance location
XLOC_033630 wrap53 coding upstream 26772 20917966 ~ 20939108 (+)
XLOC_033629 NA coding upstream 49968 20911912 ~ 20915912 (+)
XLOC_033628 NA coding upstream 57219 20869043 ~ 20908661 (+)
XLOC_033627 NA coding upstream 134310 20797002 ~ 20831570 (+)
XLOC_033626 tnfsf12 coding upstream 300541 20656942 ~ 20665339 (+)
XLOC_033632 NA coding downstream 6651 21096126 ~ 21313684 (+)
XLOC_033633 dnah2 coding downstream 231842 21321317 ~ 21626580 (+)
XLOC_033634 kdm6ba coding downstream 542625 21632100 ~ 21778474 (+)
XLOC_033635 tmem88b coding downstream 698032 21787507 ~ 21806454 (+)
XLOC_033636 NA coding downstream 730826 21820301 ~ 21831281 (+)
XLOC_033618 NA non-coding upstream 448049 20511761 ~ 20517831 (+)
XLOC_033615 NA non-coding upstream 501073 20453126 ~ 20464807 (+)
XLOC_033638 NA non-coding downstream 769743 21859218 ~ 21874346 (+)
XLOC_033645 NA non-coding downstream 1348972 22438447 ~ 22537335 (+)
XLOC_033649 BX649313.1 non-coding downstream 1542574 22632049 ~ 22655452 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000344_02175153_02206324 EFNB3B, EFNB3 coding CI01000344 null 2175153 ~ 2206324 (+)