Gene
RNA
| Item | Value |
|---|---|
| gene id | XLOC_033667 |
| gene name | htr2cl1 |
| gene type | coding |
| species | zebrafish (Danio rerio) |
| category of species | model fish |
| Item | Value |
|---|---|
| chromosome id | NC_007118.7 |
| NCBI id | CM002891.2 |
| chromosome length | 74282399 |
| location | 23292133 ~ 23494310 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| symbol | description |
|---|---|
| htr2cl1 | Predicted to enable G protein-coupled serotonin receptor activity and neurotransmitter receptor activity. Predicted to be involved in several processes, including G protein-coupled receptor signaling pathway; release of sequestered calcium ion into cytosol; and response to drug. Predicted to act upstream of or within G protein-coupled receptor signaling pathway; feeding behavior; and locomotory behavior. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in dendrite. Predicted to be integral component of plasma membrane. Is expressed in integument; nervous system; ovary; and skeletal muscle. Human ortholog(s) of this gene implicated in bipolar disorder; obesity; and schizophrenia. Orthologous to human HTR2C (5-hydroxytryptamine receptor 2C). |
| id | name | namespace |
|---|---|---|
| GO:0007186 | G protein-coupled receptor signaling pathway | biological_process |
| GO:0007187 | G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger | biological_process |
| GO:0007200 | phospholipase C-activating G protein-coupled receptor signaling pathway | biological_process |
| GO:0007268 | chemical synaptic transmission | biological_process |
| GO:0051209 | release of sequestered calcium ion into cytosol | biological_process |
| GO:0042493 | response to drug | biological_process |
| GO:0007626 | locomotory behavior | biological_process |
| GO:0007631 | feeding behavior | biological_process |
| GO:0007165 | signal transduction | biological_process |
| GO:0030425 | dendrite | cellular_component |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0005887 | integral component of plasma membrane | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0004930 | G protein-coupled receptor activity | molecular_function |
| GO:0030594 | neurotransmitter receptor activity | molecular_function |
| GO:0004993 | G protein-coupled serotonin receptor activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-081104-48 | Predicted to enable G protein-coupled serotonin receptor activity and neurotransmitter receptor activity. Predicted to be involved in several processes, including G protein-coupled receptor signaling pathway; release of sequestered calcium ion into cytosol; and response to drug. Predicted to act upstream of or within G protein-coupled receptor signaling pathway; feeding behavior; and locomotory behavior. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in dendrite. Predicted to be integral component of plasma membrane. Is expressed in integument; nervous system; ovary; and skeletal muscle. Human ortholog(s) of this gene implicated in bipolar disorder; obesity; and schizophrenia. Orthologous to human HTR2C (5-hydroxytryptamine receptor 2C). |
| ensembl_id | ENSDARG00000018228 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TCONS_00065869 | False | 3916 | mRNA | 0.44 | 8 | 23292133 | 23494310 |
| TCONS_00065871 | True | 3146 | mRNA | 0.43 | 3 | 23457803 | 23494298 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| XLOC_033666 | CR352332.1 | coding | upstream | 6982 | 23285035 ~ 23285151 (+) |
| XLOC_033665 | BX957325.1 | coding | upstream | 138948 | 23013946 ~ 23153185 (+) |
| XLOC_033664 | ccnb3 | coding | upstream | 285401 | 22981441 ~ 23006732 (+) |
| XLOC_033663 | clcn5b | coding | upstream | 391789 | 22853788 ~ 22900344 (+) |
| XLOC_033662 | pygmb | coding | upstream | 439944 | 22823889 ~ 22852189 (+) |
| XLOC_033669 | zgc:109889 | coding | downstream | 1676 | 23495986 ~ 23543642 (+) |
| XLOC_033670 | NA | coding | downstream | 69438 | 23563748 ~ 23564568 (+) |
| XLOC_033671 | si:dkey-172j4.3 | coding | downstream | 83413 | 23577723 ~ 23725799 (+) |
| XLOC_033672 | NA | coding | downstream | 254169 | 23748479 ~ 23757190 (+) |
| XLOC_033673 | rab39bb | coding | downstream | 380959 | 23875269 ~ 23884894 (+) |
| XLOC_033649 | BX649313.1 | non-coding | upstream | 636681 | 22632049 ~ 22655452 (+) |
| XLOC_033650 | NA | non-coding | upstream | 652759 | 22637209 ~ 22639374 (+) |
| XLOC_033645 | NA | non-coding | upstream | 754798 | 22438447 ~ 22537335 (+) |
| XLOC_033678 | CR388231.4 | non-coding | downstream | 524541 | 24018851 ~ 24021118 (+) |
| XLOC_033682 | CR388231.2 | non-coding | downstream | 578071 | 24072381 ~ 24072484 (+) |
| XLOC_033683 | CR388231.3 | non-coding | downstream | 580551 | 24074861 ~ 24074975 (+) |
| species | gene id | symbol | gene type | chromosome | NCBI id | location |
|---|---|---|---|---|---|---|
| grasscarp (Ctenopharyngodon idella) | CI01000026_00250758_00279248 | HTR2CL1 | coding | CI01000026 | null | 250758 ~ 279248 (+) |
