XLOC_033650


Basic Information

Item Value
gene id XLOC_033650
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 22637209 ~ 22639374 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00065826
catTTCTTTAATTGTTCACCAAATAAATATTACAGGTCAGTGCACTTCATCATAAGGACACAATCTATTTTTGCTTTCCTTTTGACTTGGACTCGCAGCTAAGCACCTAATTTATTTCAGATATTCAATCCCACACATTGTGATCTAACAAGATCGACTTTATcagatttaacatgttttctctTGAGTTTTCTTGTTTAGTTTTGAAGTAAACAAGAAATATAATCTTTCTTTTTGGGGGTGAAAATCGTGGTATGCACCCTGAACATGTTGAGGCTTATTTAAACCGTTACGCTTAAAGCCCTCATGAATGGTTCAGGGTATAAAAGTGGGTGAAGAGGAAAGGGTGCCGATGGAGATAATCCTTGCACGGGGGGATAAAAAGCAGGACTCAAATCATACCTTTTCAATCCTTTTGGAGCAGCGATATCGTTAAGATGACCAAACCAATCTGTCTGGTGTTTGCCCTACTGATTCTGACCATCATTTTGTGCAACAACTCAGTCTGTTCACAGAGGAGATCCATGAAACAATCTGCTGTTTGTGGCTGCAAACTTTACCCTGATAAGGGCCTAAAGTGTACAAAAAGACCCAACCCTAAATCCAGAGATGAATACTATGAAATTCTGAAGTGCATTTGCAGGGACACCCAAATATTCTCAAAAAGCAGCAGGAAAGAATATCTAAAGAGGTGCAACAAATTTTACCCTTCTCTTCCTTTGTGAGCTGATAAATGTGCAGGTTTATGAGGCTCCTCTGTATCAGTTAATCCATATCTATAAAAATAACACATGCATTTATTGTCTAACGCAACTAGtggaataataattaaaaaaagctcTCATTTCATCAATGTTACATGTGTAATTGATCTATTTGAATGCAATAAAGGTATGTAAAGTGTT
>TCONS_00068819
TGGTTCAGGGTATAAAAGTGGGTGAAGAGGAAAGGGTGCCGATGGAGATAATCCTTGCACGGGGGGATAAAAAGCAGGACTCAAATCATACCTTTTCAATCCTTTTGGAGCAGCGATATCGTTAAGATGACCAAACCAATCTGTCTGGTGTTTGCCCTACTGATTCTGACCATCATTTTGTGCAACAACTCAGGTAATTATAAGCAGTGGTTTACGTCTTGTTTGCACTTACTCAAGTTTTgtgtaacatttaatttttctaaCATCCTAAGACAATAATGTATTCATGAAATAGAGGATGTTGTGGGTTTTGATATCAATGTTTATGCTTGCATTGTGAGACTAATGCCACTTCTTGTCTTCACACAGTCTGTTCACAGAGGAGATCCATGAAACAATCTGCTGTTTGTGGCTGCAAACGTAAGAAATCCATTTGTTTTTCTGTAGTTTTTTCACCTAATAATGTGTATTAAAACACtcataaaaataaaggttctttattggcattgagcATTCCATGCAGAGCCTTTCTCTACACAAAGCATGGTAAAAGGCTATTTAAATTACTGAAACGTTCTTCGCTAAGAAAAATGGTTCTTAAGAACTTTAATAAAAGGTTCATGTTGAACTGTTGAAAGTGgttctacattttttaataagacTGTGGTACTGGTATGCTATAACTACATGTCCAGGAGTTCTTGTTATTCATTCAAGTAAATACAAatgcaaaaagcaaaaaaacaaaatctgaagtaataaaaaagtttaacCAAAATTAGAATGGCAAAAGTTAGTCGCTGAGTATGCTCAAGAAAGTTCCGGAAAGAGGACCAAAGCACATTTGATATCTAATATAAATCATAAGTAAACCATTGAAGTATTTTTCCAAAAGTAAAAGCGTGGTCGCCATTTCTCAAGTAGTCTACTCCTACTTAAAATTTGTAATATAAACAATCTTTAAAGAAGTATTTGGTTTCAATACAAATGTAAGTTTATAACTATTTTGGTTATGTAGATCATGCATCAAAATTATGGTTAGAGAAAtagaaaaattaagttaaaaaaattgaAGTTTATCTGTAAATTTCATTCCAACAGATATAAAAATTGAGTAAGTTCAATAAGGCCTAGTATTGTTTCATCTgcataataaaatgcaaaaaataataatttttaagtaaatgaagcaataAATTTTTATCAGTGTGTGTATAGTGACTGAACGTGAGTAActaattgtatacatttttttggcCAAGTAGATGCCAAAATTCAGCACAAATGCTTAATGGATGCTTTATATttaagtgtgtgagtgtttaattTGATGCAGATTTGAGTGTTTGATGATTGTTTTGATTTGAAGCATACGATTATTTGAGATTGCCTAATGTAATAACCCAACTTTTCTCTTTAGTTTACCCTGATAAGGGCCTAAAGTGTACAAAAAGACCCAACCCTAAATCCAGAGATGAATACTATGAAATTCTGAAGTGCATTTGCAGGGACACCCAAATATGTAAGTTTGAAGGATTGTGAATGTAAAGTAATATTACCAGTGATGAAATATAATCATTCTAATAAGTCATGTCATTCTTTTGCAGTCTCAAAAAGCAGCAGGAAAGAATATCTAAAGAGGTGCAACAAATTTTACCCTTCTCTTCCTTTGTGAGCTGATAAATGTGCAGGTTTATGAGGCTCCTCTGTATCAGTTAATCCATATCTATAAAAATAACACATGCATTTATTGTCTAACGCAACTAGtggaataataattaaaaaaagctcTCATTTCATCAATGTTACATGTGTAATTGATCTATTTGAATGCAATAAAGGTATGTAAAGTGTT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00065826 False 905 lncRNA 0.37 4 22637209 22639374
TCONS_00068819 True 1855 lncRNA 0.32 1 22637520 22639374

Neighbor

gene id symbol gene type direction distance location
XLOC_033648 cldn7a coding upstream 10356 22616212 ~ 22626853 (+)
XLOC_033647 chrnb1l coding upstream 28522 22585447 ~ 22608687 (+)
XLOC_033646 chrnb1 coding upstream 57183 22543963 ~ 22580026 (+)
XLOC_033645 NA coding upstream 99874 22438447 ~ 22537335 (+)
XLOC_033644 fgf11a coding upstream 111678 22330466 ~ 22525531 (+)
XLOC_033651 ponzr5 coding downstream 18192 22657566 ~ 22663971 (+)
XLOC_033652 ponzr3 coding downstream 36101 22675475 ~ 22677211 (+)
XLOC_033653 ponzr4 coding downstream 41186 22680560 ~ 22684292 (+)
XLOC_033654 ugt5g1 coding downstream 49407 22688781 ~ 22696987 (+)
XLOC_033655 si:dkey-165a24.9 coding downstream 62850 22702224 ~ 22712827 (+)
XLOC_033638 NA non-coding upstream 762863 21859218 ~ 21874346 (+)
XLOC_033636 NA non-coding upstream 805928 21820301 ~ 21831281 (+)
XLOC_033632 NA non-coding upstream 1323525 21096126 ~ 21313684 (+)
XLOC_033629 NA non-coding upstream 1721297 20911912 ~ 20915912 (+)
XLOC_033665 BX957325.1 non-coding downstream 374572 23013946 ~ 23153185 (+)
XLOC_033666 CR352332.1 non-coding downstream 645661 23285035 ~ 23285151 (+)
XLOC_033668 dre-mir-730 non-coding downstream 722788 23362162 ~ 23362245 (+)
XLOC_033670 NA non-coding downstream 924374 23563748 ~ 23564568 (+)
XLOC_033672 NA non-coding downstream 1109105 23748479 ~ 23757190 (+)

Expression


Co-expression Network