XLOC_033648 (cldn7a)


Basic Information

Item Value
gene id XLOC_033648
gene name cldn7a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 22616212 ~ 22626853 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00065823
GGCATCTGTATTTTATGCAACACTTCGGCTGCAGTTGACATCTGTGTCGCGGTAGCCTATAAACACATCCAGCTGCGTGACTGGCTGCTAGGTTTTGTTTTGGGGGAAAAGTTCCACAGCTTCATCGTCAGTATAGTCTGAGCGTTCCTCCAGAGAGGAACAGGTGCGGGACAGGATAAGGGATTATCGACGTTTCTCTAAAGTTTATTGAAAACTGTTGCTCAGCTTGCCATTTAAGCTTCGAAAAGAAATGGCAAACTCGGGCGTTCAGTTGCTTGGGTTCGGTCTCTCTCTGATTGGCATCATTGGACTGATCGTGGGCACCATCCTGCCCCAGTGGAAGATGTCCGCGTATGTGGGAGACAGTATCATCACCGCAGTGGCCACTTACCAGGGACTGTGGATGTCCTGCGCATTTCAGAGCACCGGACAACTTCAGTGCAAAATCTATGACTCTATTCTGCAGCTGGACAGTGACCTGCAAGCAACCCGAGCTTTGATGATTGTGGGGATCATTGTGTCCATTGCTGGTCTCGGTGTGGCCAGTATAGGCATGAAGTGCACCACTTGTGGAGCTGACGACAAAGTTCGCAAGACTCGCACGGCCATGACTGGAGGCATCATACTTCTTGTAGGAGCCCTCTGTGCAGTTGTCGCCTGCTCGTGGTTTGCCCATAATGTGATCCGAGCATTCTACAACCCCTTCACTCCAGTCAACACCAAGTTTGAGTTTGGAGCAGCCATTTTCATAGCTTGGGGTGGCTCATTTCTTGATGTTCTCGGTGGAGCCATGTTGGCTGCCTCTTGCCCTCGAAGTAAACAAGTGTCAAAATATCCTAAAAGTAACTCTACACGATCAGCCAACGGCAGCAACAAAGAGTATGTGTGAGCAAGACTGCCTCTCACTGGACAGACATTGTAACAGCTTCAAAAGGTGAAGACTTTCTTCAGCAGAATAATCACTGAGCATGCTGTTGAAGAAATGAGGTGAGAAACGAGAAGGAAAACCGCTCACACTGTTGAATGTTCCCTTGATAAAAAAGTGGCAACCAGTTGTCTAAaagtttgaataaaaatatatatttacaaactcTATGGGAGGTTTTAAAATGGAGGATTGTAGAAATCTAGCGCCAGTAGAAATACTCACAGCCCTCAGTGCTTCAGCTAAGTTGTTTTATGTGTGTAATTAAGGAGGAGAAACTTTTGATAGTGGGCCAAATATGTCGGCGTTCCCAAAGTGTCCACTAGGGAGCACTAGAAACAACACAATGAGCAAGTGTTTCCTAAAATGGGAGAGATTTCCCAGAGCTTTTGTTTGTGGAGTGTTTATCCTACAACAGACGAAGTGCTAACATTATTAACACTCACATGAGTCATTGTTGTGTAGTTTGATGTAATCACAGTGTTTGAAGTATTATAAATCTTCTTTCTTTTACTAAACACATTTCTGCATTAACTCACACTTGTCATTACTTTACCCATAAGCCCTTTTGAATACTACATATAGTACTTATAAATGCTTCCCGATAATGTAAATGTTAGTTAAATATTGTTCATACATTTGTGTTACATgcttattttcaataaatttgcTTTCATCCTA
>TCONS_00065824
aaaacaaataaatacccaTGATTCCTGGCGATTCATTGAGGTTTAACAGTCTGTAGAAGAAGATAAAAAGGAGAAACAATACACTTGAAATTTCCTAGATTCCCCTGCCCATATATACAAGAGTCAAaaagtaaaatgttaaatttattgCACATATCAACAATTTCACTTATAGAACATTAATTTAATGTATAGTCAGGAGCCACATACTGTATATGAATATTcttttgcctgtatatgtttttgaATCTCAAAGTAGCCACTAAATTGAATTTTATGAAAAGGCAAGGACcaccgtttaaaaaaaaaaagtcacctaaaGTTTTATTTTGGGTTGAGCTATCCTTCTTAAGATCTTTAGTATCTGCATCTGTTTGATATTCCGTCCATCTCTACCCGTGTCCTGCAGGTGACCTGCAAGCAACCCGAGCTTTGATGATTGTGGGGATCATTGTGTCCATTGCTGGTCTCGGTGTGGCCAGTATAGGCATGAAGTGCACCACTTGTGGAGCTGACGACAAAGTTCGCAAGACTCGCACGGCCATGACTGGAGGCATCATACTTCTTGTAGGAGCCCTCTGTG

Function

symbol description
cldn7a Predicted to enable structural molecule activity. Acts upstream of or within head development. Predicted to be located in cell junction and membrane. Predicted to be integral component of membrane. Predicted to be active in bicellular tight junction and plasma membrane. Is expressed in several structures, including eye; gill; heart; integument; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in Crohn's disease and atopic dermatitis. Orthologous to several human genes including CLDN7 (claudin 7).

GO:

id name namespace
GO:0070830 bicellular tight junction assembly biological_process
GO:0007155 cell adhesion biological_process
GO:0060322 head development biological_process
GO:0005886 plasma membrane cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0030054 cell junction cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-29 Predicted to enable structural molecule activity. Acts upstream of or within head development. Predicted to be located in cell junction and membrane. Predicted to be integral component of membrane. Predicted to be active in bicellular tight junction and plasma membrane. Is expressed in several structures, including eye; gill; heart; integument; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in Crohn's disease and atopic dermatitis. Orthologous to several human genes including CLDN7 (claudin 7).

Ensembl:

ensembl_id ENSDARG00000036376

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00065823 False 1606 mRNA 0.44 4 22616212 22626853
TCONS_00065824 True 583 lncRNA 0.39 2 22619944 22624790

Neighbor

gene id symbol gene type direction distance location
XLOC_033647 chrnb1l coding upstream 7525 22585447 ~ 22608687 (+)
XLOC_033646 chrnb1 coding upstream 36186 22543963 ~ 22580026 (+)
XLOC_033645 NA coding upstream 78877 22438447 ~ 22537335 (+)
XLOC_033644 fgf11a coding upstream 90681 22330466 ~ 22525531 (+)
XLOC_033643 tmem102 coding upstream 291072 22313533 ~ 22325140 (+)
XLOC_033649 BX649313.1 coding downstream 5196 22632049 ~ 22655452 (+)
XLOC_033650 NA coding downstream 10356 22637209 ~ 22639374 (+)
XLOC_033651 ponzr5 coding downstream 30713 22657566 ~ 22663971 (+)
XLOC_033652 ponzr3 coding downstream 48622 22675475 ~ 22677211 (+)
XLOC_033653 ponzr4 coding downstream 53707 22680560 ~ 22684292 (+)
XLOC_033638 NA non-coding upstream 741866 21859218 ~ 21874346 (+)
XLOC_033636 NA non-coding upstream 784931 21820301 ~ 21831281 (+)
XLOC_033632 NA non-coding upstream 1302528 21096126 ~ 21313684 (+)
XLOC_033629 NA non-coding upstream 1700300 20911912 ~ 20915912 (+)
XLOC_033665 BX957325.1 non-coding downstream 387093 23013946 ~ 23153185 (+)
XLOC_033666 CR352332.1 non-coding downstream 658182 23285035 ~ 23285151 (+)
XLOC_033668 dre-mir-730 non-coding downstream 735309 23362162 ~ 23362245 (+)

Expression


Co-expression Network