XLOC_033675 (si:dkey-183c6.7)


Basic Information

Item Value
gene id XLOC_033675
gene name si:dkey-183c6.7
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 23940933 ~ 23965561 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00065883
GTTTCATTTCGGTTGATGTGACCAGTGGACCATGTGTGATTGAGAGAACAGAGGAAGTGAGAGAGAACAGAACGCATGTCTGAAAGAAAGGACTGGGGAGACGGCgagaaaaaaaggaggaaaaggtCAGTAGAAGTCGGATTAGTCAGAGTTGAGTCTgaaacttcctaaatgctacgcGGTTTCGATTGGCACCATGAGGATTTCAGAAAAAAACACACCGGAGCAGTCCGAAGGCCTAAAACAGCGTGTCATCAGTGCCCTGCTGTACTGCAGTGGAGAAATGCAACAGTTACACTCTCACATGCAGGATAAACCCTACCCACTGCAACTGGCAGAGTGGTGTTTGCGTGGGATCTCACGGGTGATTCTGCTGAACAATCCCCTGAGTGGGGCTGTGATTCTGGCAGCGCTGCTGCTGGAGAGCCCCTGGCAGGCTCTGCTGGGGATGCTGGGCCTTTTGGCCTCTACCTTCACAGCTATAATCCTGGGACAGGATTGTGAGGAGGTGTCCAGTGGTCTTCATGGTTTTAATGGGATGCTGGTGGCTCTGCTGATGGGTGTGTTCAGCTCTGCTGGAGACTGGTACTGGTGGCTCCTGGTGCCTGTGTGTCTTGGAGGAGCTGCAACAACTTTTTTTTCCAGTAGTCTGGCTCCAATTCTGGACCACTGGGATTTACCAGTGAGCGTCTTCCCATTTAACACAGTCATTGTACTGTATCTGGCCTGCACCGGCACTTCCAACCCCTATTTTCCAAACTATCCTGCCCATCCACCAGGGGCGTCAGAGAGCACAAACCAAACCAGGCTCCATGTTCCACAGCTTCTGCAGGGGGTGGTGTTGGGCGTAGGGCAGATCTTTGCCTGTGAGACTCTTGGTCCATCTCTGCTTATCCTGGGCGCGGTTTTCATCTTTTCACCCATTCTGGCCATCAACGCCCTCCTTGGGTCTGTGATGAGCACTATGGCAGGTCTGTCTATGTCAGTACAGCACGGATTTCTGTATTCTGGTCTATCAGGCTTCAATGGGGCTCTGGGCTGCATGGGCGTTGGGgcgttttttatatttagttggAGAACACTTCTCTTATCTGTTGCAAGTGCCTTGCTTTCAGCTTACACAGACATTGCCCTGAGCAACCTGTTAGGAGCTGTGGGTCTCCCAGCAAGCAGTTGGGCTGCTACTCTGATTGGCACTCTGGTACTGTTGCTGACAGGCAAAAACCTCAAAGAACACAGAATCCCCACTGGAAAAGTAACCTCACCTGAGATGAACTTGCGCTCACATAAGGAATGGTCTGCAACCAATACAACTACAGCTGATGTATAG
>TCONS_00065884
ATGAGGATTTCAGAAAAAAACACACCGGAGCAGTCCGAAGGCCTAAAACAGCGTGTCATCAGTGCCCTGCTGTACTGCAGTGGAGAAATGCAACAGTTACACTCTCACATGCAGGATAAACCCTACCCACTGCAACTGGCAGAGTGGTGTTTGCGTGGGATCTCACGGGTGATTCTGCTGAACAATCCCCTGAGTGGGGCTGTGATTCTGGCAGCGCTGCTGCTGGAGAGCCCCTGGCAGGCTCTGCTGGGGATGCTGGGCCTTTTGGCCTCTACCTTCACAGCTATAATCCTGGGACAGGATTGTGAGGAGGTGTCCAGTGGTCTTCATGGTTTTAATGGGATGCTGGTGGCTCTGCTGATGGGTGTGTTCAGCTCTGCTGGAGACTGGTACTGGTGGCTCCTGGTGCCTGTGTGTCTTGGAGGAGCTGCAACAACTTTTTTTTCCAGTAGTCTGGCTCCAATTCTGGACCACTGGGATTTACCAGTGAGCGTCTTCCCATTTAACACAGTCATTGTACTGTATCTGGCCTGCACCGGCACTTCCAACCCCTATTTTCCAAACTATCCTGCCCATCCACCAGGGGCGTCAGAGAGCACAAACCAAACCAGGCTCCATGTTCCACAGCTTCTGCAGGGGGTGGTGTTGGGCGTAGGGCAGATCTTTGCCTGTGAGACTCTTGGTCCATCTCTGCTTATCCTGGGCGCGGTTTTCATCTTTTCACCCATTCTGGCCATCAACGCCCTCCTTGGGTCTGTGATGAGCACTATGGCAGGTCTGTCTATGTCAGTACAGCACGGATTTCTGTATTCTGGTCTATCAGGCTTCAATGGGGCTCTGGGCTGCATGGGCGTTGGGgcgttttttatatttagttggAGAACACTTCTCTTATCTGTTGCAAGTGCCTTGCTTTCAGCTTACACAGACATTGCCCTGAGCAACCTGTTAGGAGCTGTGGGTCTCCCAGCAAGCAGTTGGGCTGCTACTCTGATTGGCACTCTGGTACTGTTGCTGACAGGCAAAAACCTCAAAGAACACAGAATCCCCACTGGAAAAGTAACCTCACCTGAGATGAACTTGCGCTCACATAAGGAATGGTCTGCAACCAATACAACTACAGCTGATGTATAG
>TCONS_00065885
CAACTTCTGGTTCACACAGACTCTAAAGGTGGAATATTTCATAACATAGACataaaatgaatgattcaatgaattCAATTTTAAGATCCtaattaatagcaaaaaaaaaacacacatatcaTCTAATTTGGAATGAGAAACTCTTCTTTGAGAAGGATTCAGGTGTAGAAAATTGATTGGGCTTTTTTATCTAAACACTAGAAGGGAAACATATGCTGATTTCAGTTTACACACATGACCTAACCTGTGTGTATGTGCAGTGAGGAGGTGTCCAGTGGTCTTCATGGTTTTAATGGGATGCTGGTGGCTCTGCTGATGGGTGTGTTCAGCTCTGCTGGAGACTGGTACTGGTGGCTCCTGGTGCCTGTGTGTCTTGGAGGAGCTGCAACAACTTTTTTTTCCAGTAGTCTGGCTCCAATTCTGGACCACTGGGATTTACCAGTGAGCGTCTTCCCATTTAACACAGTCATTGTACTGTATCTGGCCTGCACCGGCACTTCCAACCCCTATTTTCCAAACTATCCTGCCCATCCACCAGGGGCGTCAGAGAGCACAAACCAAACCAGGCTCCATGTTCCACAGCTTCTGCAGGGGGTGGTGTTGGGCGTAGGGCAGATCTTTGCCTGTGAGACTCTTGGTCCATCTCTGCTTATCCTGGGCGCGGTTTTCATCTTTTCACCCATTCTGGCCATCAACGCCCTCCTTGGGTCTGTGATGAGCACTATGGCAGGT

Function

symbol description
si:dkey-183c6.7 Predicted to enable urea transmembrane transporter activity. Predicted to act upstream of or within urea transmembrane transport. Predicted to be located in plasma membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0071918 urea transmembrane transport biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015204 urea transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-160728-81 Predicted to enable urea transmembrane transporter activity. Predicted to act upstream of or within urea transmembrane transport. Predicted to be located in plasma membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000102029

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00065883 False 1330 mRNA 0.51 9 23940933 23965561
TCONS_00065884 False 1134 mRNA 0.52 8 23943597 23965561
TCONS_00065885 True 732 lncRNA 0.46 3 23946061 23949757

Neighbor

gene id symbol gene type direction distance location
XLOC_033674 syt4 coding upstream 24815 23907692 ~ 23916118 (+)
XLOC_033673 rab39bb coding upstream 56039 23875269 ~ 23884894 (+)
XLOC_033672 NA coding upstream 183743 23748479 ~ 23757190 (+)
XLOC_033671 si:dkey-172j4.3 coding upstream 215134 23577723 ~ 23725799 (+)
XLOC_033670 NA coding upstream 376365 23563748 ~ 23564568 (+)
XLOC_033676 ccdc166 coding downstream 31957 23997518 ~ 24002244 (+)
XLOC_033677 homezb coding downstream 41314 24006875 ~ 24013888 (+)
XLOC_033678 CR388231.4 coding downstream 53290 24018851 ~ 24021118 (+)
XLOC_033679 tinf2 coding downstream 58092 24023653 ~ 24040061 (+)
XLOC_033680 efs coding downstream 84215 24049776 ~ 24068953 (+)
XLOC_033668 dre-mir-730 non-coding upstream 578688 23362162 ~ 23362245 (+)
XLOC_033666 CR352332.1 non-coding upstream 655782 23285035 ~ 23285151 (+)
XLOC_033665 BX957325.1 non-coding upstream 787748 23013946 ~ 23153185 (+)
XLOC_033682 CR388231.2 non-coding downstream 106820 24072381 ~ 24072484 (+)
XLOC_033683 CR388231.3 non-coding downstream 109300 24074861 ~ 24074975 (+)
XLOC_033684 CR388231.1 non-coding downstream 111150 24076711 ~ 24076821 (+)
XLOC_033688 CR318603.2 non-coding downstream 230981 24196542 ~ 24200584 (+)

Expression


Co-expression Network