XLOC_033679 (tinf2)


Basic Information

Item Value
gene id XLOC_033679
gene name tinf2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 24023653 ~ 24040061 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00065889
CGGAAACCGCATTTCGTCATTTTGGCGCGAGAAGTGTATTCATTGCCGTGACCAACACCGTTTCCTAACGAAATCATCggtttttgtaaacagtttgtttatagTATGTAAAtcaagatcatactttataaagcATCGCCGTTATCGCATCGTGTTATGCAGATACTCTTAATCCTTTATATGTCGTAGATGACTTTTAGTTTGaactgtatagtttttttttgtttgtgaatcAAGTGAGCGACCTATAAAGGAACACAGTTGTTTGTTTTCAGGATGAacaggaaaacaaaaacagcgACTAGATCTCTGGAGAAAGATCAACCTCTACCCATGTCAGCCCTGCAGCTTATCGCTCCACCACTGCGGCTCTTGTCTGCGGCCATGTGGAAGGTGATGTTGCAGAGAGACACAGTGCATTATGGGAAGGTGGAGGAAACTATAACATCGCTCTGTGAGACTGTACCTGGACTGCTCGATTACAGACATCAGGCCAGGCTGACTATGGGTTTGAGGGCCCTGATGATCTTGGAGGAGCTTCGTCAGCCGGATCCTCCAGATGCGGAGCTTGTCCTTCAGGAATTGAAGAAGCTGCAGATGTCCTCCTGCATTCCCAATGGAAAGAAGAAGGATCAAAAGGTGGAGGAAGCAAAACGCAACTTTCAAACCCTGGTCCAGTCTCTCCTGAAGAATCCATCAGCTAGAAAACAGTTCTACAAGGAGGATTTTCAACTTCACTATGGAAGAAACTATGCTGCCAGTCTAGAGAAGTTAATGTGGGAGTTTCTTATCCGACTGGATCAGCTATTACCTGTTCCAGATCTTGCACAGACGGTGTCGTGGCTCAGTGCTGCCCCTGCTGTTCTGGAGGAATGTGCGCGCTCTGCTTCACAGCCTCAGCTCGTCAGAACTCTGCTGCAGCATGAAGTATGCCTTGGACACCTCGGCTCATcaTCTCTTCTGTCATCTACTGGAGATGCGATCCTGTCCTCCCTTTCCCTTCCTCTTTCGGGTAAAGTACTACAAACCATCCAGTCAGAATCCACTTCCGCATCCAACAGAGTCACAACTCCTGCCCAGTCAACCCCCAGGACAACTCGCAGAATGGCAAAACAAGCCCAGTCACAGGTCGCACCAGTGATTGGCTCCATTTCTTGCGTCAACCTCCAAATAAACAATGAGAAAGTGGCATCTGAATCAGCCAAATCAGCTTCAGAGGTGCAGAGAAACACCAGAACCAATCTAAGATCACAATCGAAAAAACAGGTACCAGAAAAAGAAGAGGAGCATTACGTTGGTAATCTGTTGTTCACCGTGATCACCCAATCATCCGGCAGTGAAgtagaggaagaggaggaggaagatggTGGCAAAGAAGACACCAGCAATACTGATGAAAGTAGTGAGAGGTCATTTAAACTACCCCAACAAACTGAAGTCGAACAGAAGAATGGATCAAGAGTGTCAGGTGTTACGAGGAAATGTTCAACTAAGACAAACGCAGAGGCCGCCGGGTCACAAGATGAAGGAGAAATAAGTGAAATCCTCATTTCCTGCATGAAGCGCAATTTGAGAGTTGTTGTTCCCAGATTAAACATCAGCAGTAATGCTCTTCCTGTCCAGCTGAATCATCTGGCTGAAGAGAAGGACGGTACGAGTTATTCAGGCCAGTCTAACTCAAAAGACAGAGTGAGGAATAGAGACTCTGTGCAACGCAAGAGAAGATTTCCTAATTCAAGTCCAACGCCGGAGAAGCTCCTGACTTTATCGGTCAATAAGCTAGCTCCTGCATGCTCTCCATGTATTCCACTTCTTAAGCGTCTTCCAGTCGGTACTCCGGaaACGCCGTCCCCTTTGATTAAATCATCAGATGACATTATAGGCGACTCTGATGATGAGAGAGCAGGCACTGTGAAGAGAAAGGTATTCAATCAGCAGTACTGCAAAACGAACAACGGTACATATGTGCCCACCCTCCGGGAGTTCTGGAATCCTGTGTTTTGTCCCTCTTCATCTCCTGGAAGCAGACATTAATGCTGTTGAGACTTTGATGCTTTAGCTTTTGCTGTAATATACACACGTTCTTAGAATtgagttttgtattttaataagagACTGAAGGCCCCTTCCAATGTAGAATATTTGTAATCAAAGGGAATCTAACTGCTTTTAGTAAGTGTGCGTGTTAATGATtgtaatacattattttattttaaatgtaagtatCTGTGTTCTGTAGAATTATGCTATCGTTTGTAAtggaaaaaagtattaaaataaaaaattcttctTCTCCTA
>TCONS_00065890
GATGAAAGTAGTGAGAGGTCATTTAAACTACCCCAACAAACTGAAGTCGAACAGAAGAATGGATCAAGAGTGTCAGGTGTTACGAGGAAATGTTCAACTAAGACAAACGCAGAGGCCGCCGGGTCACAAGATGAAGGAGAAATAAGTGAAATCCTCATTTCCTGCATGAAGCGCAATTTGAGAGTTGTTGTTCCCAGATTAAACATCAGCAGTAATGCTCTTCCTGTCCAGCTGAATCATCTGGCTGAAGAGAAGGACGGTACGAGTTATTCAGGCCAGTCTAACTCAAAAGACAGAGTGAGGAATAGAGACTCTGTGCAACGCAAGAGAAGATTTCCTAATTCAAGTCCAACGCCGGAGAAGCTCCTGACTTTATCGGTCAATAAGCTTTGACAAATAATTTTCTGCCTCTTCTTGAAGAGCTCCTGCATGCTCTCCATGTATTCCACTTCTTAAGCGTCTTCCAGTCGGTACTCCGGaaACGCCGTCCCCTTTGATTAAATCATCAGATGACATTATAGGCGACTCTGATGATGAGAGAGCAGGCACTGTGAAGAGAAAGGTATTCAATCAGCAGTACTGCAAAACGAACAACGGTACATATGTGCCCACCCTCCGGGAGTTCTGGAATCCTGTGTTTTGTCCCTCTTCATCTCCTGGAAGCAGACATTAATGCTGTTGAGACTTTGATGCTTTAGCTTTTGCTGTAATATACACACGTTCTTAGAATtgagttttgtattttaataagagACTGAAGGCCCCTTCCAATGTAGAATATTTGTAATCAAAGGGAATCTAACTGCTTTTAGTAAGTGTGCGTGTTAATGATtgtaatacattattttattttaaatgtaagtatCTGTGTTCTGTAGAATTATGCTATCGTTTGTAAtggaaaaaagtattaaaataaaaaattcttctTC

Function

symbol description
tinf2 Predicted to enable telomeric DNA binding activity. Predicted to be involved in regulation of telomere maintenance via telomere lengthening and telomere capping. Predicted to be part of shelterin complex. Is expressed in several structures, including gill; heart; liver; pleuroperitoneal region; and post-vent region. Human ortholog(s) of this gene implicated in Revesz syndrome and autosomal dominant dyskeratosis congenita 3. Orthologous to human TINF2 (TERF1 interacting nuclear factor 2).

GO:

id name namespace
GO:0016233 telomere capping biological_process
GO:1904356 regulation of telomere maintenance via telomere lengthening biological_process
GO:0070187 shelterin complex cellular_component
GO:0005515 protein binding molecular_function
GO:0042162 telomeric DNA binding molecular_function

KEGG:

id description
ko03032 DNA replication proteins

ZFIN:

id description
ZDB-GENE-030131-6168 Predicted to enable telomeric DNA binding activity. Predicted to be involved in regulation of telomere maintenance via telomere lengthening and telomere capping. Predicted to be part of shelterin complex. Is expressed in several structures, including gill; heart; liver; pleuroperitoneal region; and post-vent region. Human ortholog(s) of this gene implicated in Revesz syndrome and autosomal dominant dyskeratosis congenita 3. Orthologous to human TINF2 (TERF1 interacting nuclear factor 2).

Ensembl:

ensembl_id ENSDARG00000054473

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00065889 False 2298 mRNA 0.44 10 24023653 24040061
TCONS_00065890 True 932 nonsense_mediated_decay 0.40 4 24033901 24040056

Neighbor

gene id symbol gene type direction distance location
XLOC_033678 CR388231.4 coding upstream 2535 24018851 ~ 24021118 (+)
XLOC_033677 homezb coding upstream 9765 24006875 ~ 24013888 (+)
XLOC_033676 ccdc166 coding upstream 21409 23997518 ~ 24002244 (+)
XLOC_033675 si:dkey-183c6.7 coding upstream 58092 23940933 ~ 23965561 (+)
XLOC_033674 syt4 coding upstream 107535 23907692 ~ 23916118 (+)
XLOC_033680 efs coding downstream 9715 24049776 ~ 24068953 (+)
XLOC_033681 acin1b coding downstream 29360 24069421 ~ 24097070 (+)
XLOC_033682 CR388231.2 coding downstream 32320 24072381 ~ 24072484 (+)
XLOC_033683 CR388231.3 coding downstream 34800 24074861 ~ 24074975 (+)
XLOC_033684 CR388231.1 coding downstream 36650 24076711 ~ 24076821 (+)
XLOC_033672 NA non-coding upstream 266463 23748479 ~ 23757190 (+)
XLOC_033670 NA non-coding upstream 459085 23563748 ~ 23564568 (+)
XLOC_033668 dre-mir-730 non-coding upstream 661408 23362162 ~ 23362245 (+)
XLOC_033666 CR352332.1 non-coding upstream 738502 23285035 ~ 23285151 (+)
XLOC_033688 CR318603.2 non-coding downstream 156481 24196542 ~ 24200584 (+)
XLOC_033690 CR318603.1 non-coding downstream 170010 24210071 ~ 24215155 (+)

Expression


Co-expression Network