XLOC_033809 (tpma)


Basic Information

Item Value
gene id XLOC_033809
gene name tpma
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 29951997 ~ 29962080 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00066123
CGGCCCCCTTGTAAGACGTCTTGGCCCTCAGATCCCATATTTAGGCATTTCAGTCGTCAAATGTCTGAAGGCAGCGAATCGCCTTCcagatctttaaaaaaagacgcaAGGAAGGAGGAACCGCGGTGGGTTGCTCCCAAAAAAGTATTGGGTGTCTTGCGGAACTTCTCAGGCTCCTGTGAAGGCACATATTTGACAGGCTACAGCGAGACCAGCTCGCACTCCAGCTCAGCGTTCAGTACAGCACAGACGCTCGAAGCCTCTCTCAGTCCAGTGTTTGGTGCggccacacatacactcacacagcCATGGATGCCATTAAGAAGAAGATGCAGATGCTCAAGCTCGACAAGGAGAACGCCTTGGACAGAGCAGAGCAGGCTGAGACCGACAAGAAAGCAGCTGAGGAGAGGAGCAAGCAGCTCGAGGATGACCTGGTCGCCCTGCAGAAGAAGCTGAAGGCAACCGAGGATGAGTTGGACAAATACTCCGAGGCCCTGAAGGATGCACAGGAGAAACTGGAACTGGCTGAGAAGAAAGCTACCGATGCTGAGGGCGACGTCGCTTCCCTGAACAGACGCATCCAGCTGGTTGAGGAGGAGTTGGATCGCGCTCAGGAGCGTCTGGCCACTGCTCTGCAGAAGCTGGAGGAGGCCGAGAAGGCTGCTGATGAGAGTGAGAGAGGCATGAAGGTCATTGAGAACAGGGCCCTGAAGGATGAGGAGAAGATGGAGCTGCAGGAGATCCAGTTGAAGGAGGCCAAGCACATTGCTGAGGAGGCTGATCGCAAGTATGAGGAGGTGGCCCGTAAGCTGGTGATTGTTGAGGGTGAGCTGGAGCGTACTGAGGAGCGCGCTGAGCTCAATGAGGGTAAGTGCTCTGAGCTGGAGGAGGAGTTGAAAACTGTGACCAACAACATGAAGTCTCTGGAGGCCCAGGCTGAGAAGTACTCAGCTAAGGAGGACAAATATGAGGAGGAGATCAAGGTCTTGACTGACAAGCTGAAGGAGGCTGAGACTCGTGCTGAGTTCGCTGAGAGATCAGTCGCCAAGCTTGAGAAGACCATTGATGATCTGGAGGATGAATTGTATGCCCAGAAACTCAAGTACAAAGCCATCAGCGAGGAGCTGGACCACGCTCTCAACGACATGACCTCCATTTAAATTTTTTACATCTCATCTCTGGCTCCGGGCACCATCTGAGCGGCATCTCCTTCATTTCCTCCATGTTTCTCTTCTTTTCTTTGTTGCCGCTTTTCTCCATCGCACTATTCTCAGTGGGAATGGAGGACTCAGCTCTTTAGTCCCATCATTTGTACAGAAATTTTTAGCTTTCTGTGAAATAAAATTTCCTCCCATCTGTGTAAGCTCCCCACTCCTTTCTCTCTTTAGTATGTCTTAACTCTTTTGATTTCTTATGTCCTTAATTTATTGTCGAGAAGCTTGAATAAAATCCAAAAAAAGCTCCTTCTCATCacctcatgttgcttctctctttGACAGTTCATGTTTACCTGTAATGCTCATATTCATACCATAGGAATCCACAGTGCAGGTTCTGCTGTAAAAGTTTAAAGATCTCagcataacatttaataaatcattttgggTTAATGTTTGTGAAACTAACATCTCTCCTAACATCTCTCTTTTCATTTcactcttctcttctcttctcttctcttctcttctcttctcttctcttctcttctctcctctcctcttctcttctcttctcttctcttctcttctcttctcttctcttctcttctctcctcTTCCTTCTCCAGAACCGCTCTATCAACAGCTCCAGAAAAACCGGGTCCTTTCACATGAGCTCAGTTTAGCGCTGAATGAGTTCTGACCTGACTGTAGAATAAGAGAACTTATATACTAAATAGAACACTAAATATTATGTCAGTTGTTTGTGGTGCAAATCAGTGATTAGTGAATAATCAGTGATGACAGATTGGAACAATTCTATTACTATTCTATTGCTGTTTATATTGAAGATCTtgagctttttgtgtgtgtgtgtgtgaaggttgAAACATGTGATAAAGCATATGCATTTACAGTTACACAAAAGTTATAGTTATTTAAAGTATACATAAACGTTTTCCTTTAAAAGGTAACAGGCCTCgtccttttaaaatattttatagggGAAAATCTTAACATAGAAAGGGACAAGTGCCTTCTGCATTACATAAATCACGTTGGATCAATACCAAAGGTAGTTTGTTGTGGGAGTATATTGCTATATTTTCAGTAGTTGAACTTTTAGAATCAGAAAAAGGTTATTAGAAGTGGCTATATCAATAACTAGCAACCCAAGCTTATTAAAAATGTGTGCAATTAGTAATATTCAGATACAATGAGCAAATCTCAGGTAAATTAAGAAatattctaccagaaacgtacattttcacttataaaaatgtgacagggccttACATTTAAGGTTGTTCTCCtccaaaaaaaacttaaaaaaacacgCAAAAAATCATACCGTTCAATGATAGAAcacatccttgatcactgtcagcttcttctctgtcaaatgatgtcacttccgaGTCATAGCCATAAAGGTGTATTGCACGCATCTTATGTTACATTTAATGCAAAtctgacaggactgacagaaacattgGGGCAATTgtataatagtatttatttatagaataaatttattatttcatgtttttaatcaattgatgtgaatgataacaactttaactcgctatttattaagtttttttcttcttcaaaataACAGTTTATAACATAACAAACTATTAAAGCTGACagagtttgtacatttgtaaagtgttttgataaagaaaagaaaaaaatctgggaaccaaatgaatgacatattcttttacagaacaactcacttaaaaatcaaccatcagtccattttagaaatATTTGGAATGAAATACTTCTTATTCACTGTATTTGCGTTATTATTTCAGGGACCGATAATGTACGTTTTTGGTAGAATGTGCCtcaaatgtttatattttctgGAACAAAATGACGAATAAATTATGAATATTCCTGAATAAAATTACTTATTTC
>TCONS_00066124
GCTCCTGTGAAGGCACATATTTGACAGGCTACAGCGAGACCAGCTCGCACTCCAGCTCAGCGTTCAGTACAGCACAGACGCTCGAAGCCTCTCTCAGTCCAGTGTTTGGTGCggccacacatacactcacacagcCATGGATGCCATTAAGAAGAAGATGCAGATGCTCAAGCTCGACAAGGAGAACGCCTTGGACAGAGCAGAGCAGGCTGAGACCGACAAGAAAGCAGCTGAGGAGAGGAGCAAGCAGGAGATCCAGTTGAAGGAGGCCAAGCACATTGCTGAGGAGGCTGATCGCAAGTATGAGGAGGTGGCCCGTAAGCTGGTGATTGTTGAGGGTGAGCTGGAGCGTACTGAGGAGCGCGCTGAGCTCAATGAGGGTAAGTGCTCTGAGCTGGAGGAGGAGTTGAAAACTGTGACCAACAACATGAAGTCTCTGGAGGCCCAGGCTGAGAAGTACTCAGCTAAGGAGGACAAATATGAGGAGGAGATCAAGGTCTTGACTGACAAGCTGAAGGAGGCTGAGACTCGTGCTGAGTTCGCTGAGAGATCAGTCGCCAAGCTTGAGAAGACCATTGATGATCTGGAGGATGAATTGTATGCCCAGAAACTCAAGTACAAAGCCATCAGCGAGGAGCTGGACCACGCTCTCAACGACATGACCTCCATTTAAATTTTTTACATCTCATCTCTGGCTCCGGGCACCATCTGAGCGGCATCT
>TCONS_00066125
AGGCACATATTTGACAGGCTACAGCGAGACCAGCTCGCACTCCAGCTCAGCGTTCAGTACAGCACAGACGCTCGAAGCCTCTCTCAGTCCAGTGTTTGGTGCggccacacatacactcacacagcCATGGATGCCATTAAGAAGAAGATGCAGATGCTCAAGCTCGACAAGGAGAACGCCTTGGACAGAGCAGAGCAGGCTGAGACCGACAAGAAAGCAGCTGAGGAGAGGAGCAAGCAGCTCGAGGATGACCTGGTCGCCCTGCAGAAGAAGCTGAAGGCAACCGAGGATGAGTTGGACAAATACTCCGAGGCCCTGAAGGATGCACAGGAGAAACTGGAACTGGCCGAGAAGGCTGCTGATGAGAGTGAGAGAGGCATGAAGGTCATTGAGAACAGGGCCCTGAAGGATGAGGAGAAGATGGAGCTGCAGGAGATCCAGTTGAAGGAGGCCAAGCACATTGCTGAGGAGGCTGATCGCAAGTATGAGGAGGTGGCCCGTAAGCTGGTGATTGTTGAGGGTGAGCTGGAGCGTACTGAGGAGCGCGCTGAGCTCAATGAGGGTAAGTGCTCTGAGCTGGAGGAGGAGTTGAAAACTGTGACCAACAACATGAAGTCTCTGGAGGCCCAGGCTGAGAAG
>TCONS_00066126
GGCACATATTTGACAGGCTACAGCGAGACCAGCTCGCACTCCAGCTCAGCGTTCAGTACAGCACAGACGCTCGAAGCCTCTCTCAGTCCAGTGTTTGGTGCggccacacatacactcacacagcCATGGATGCCATTAAGAAGAAGATGCAGATGCTCAAGCTCGACAAGGAGAACGCCTTGGACAGAGCAGAGCAGGCTGAGACCGACAAGAAAGCAGCTGAGGAGAGGAGCAAGCAGCTCGAGGATGACCTGGTCGCCCTGCAGAAGAAGCTGAAGGCAACCGAGGATGAGTTGGACAAATACTCCGAGGCCCTGAAGGATGCACAGGAGAAACTGGAACTGGCTGAGAAGAAAGCTACCGATGCTGAGGGCGACGTCGCTTCCCTGAACAGACGCATCCAGCTGCTGCAGGAGATCCAGTTGAAGGAGGCCAAGCACATTGCTGAGGAGGCTGATCGCAAGTATGAGGAGGTGGCCCGTAAGCTGGTGATTGTTGAGGGTGAGCTGGAGCGTACTGAGGAGCGCGCTGAGCTCAATGAGGGTAAGTGCTCTGAGCTGGAGGAGGAGTTGAAAACTGTGACCAACAACATGAAGTCTCTGGAGGCCCAGGCTGAGAAGTACTCAGCTAAGGAGGACAAATATGAGGAGGAGATCAAGGTCTTGACTGACAAGCTGAAGGAGGCTGAGACTCGTGCTGAGTTCGCTGAGAGATCAGTCGCCAAGCTTGAGAAGACCATTGATGATCTGGAGG
>TCONS_00066127
TTGACAGGCTACAGCGAGACCAGCTCGCACTCCAGCTCAGCGTTCAGTACAGCACAGACGCTCGAAGCCTCTCTCAGTCCAGTGTTTGGTGCggccacacatacactcacacagcCATGGATGCCATTAAGAAGAAGATGCAGATGCTCAAGCTCGACAAGGAGAACGCCTTGGACAGAGCAGAGCAGGCTGAGACCGACAAGAAAGCAGCTGAGGAGAGGAGCAAGCAGCTCGAGGATGACCTGGTCGCCCTGCAGAAGAAGCTGAAGGATGAGGAGAAGATGGAGCTGCAGGAGATCCAGTTGAAGGAGGCCAAGCACATTGCTGAGGAGGCTGATCGCAAGTATGAGGAGGTGGCCCGTAAGCTGGTGATTGTTGAGGGTGAGCTGGAGCGTACTGAGGAGCGCGCTGAGCTCAATGAGGGTAAGTGCTCTGAGCTGGAGGAGGAGTTGAAAACTGTGACCAACAACATGAAGTCTCTGGAGGCCCAGGCTGAGAAGTACTCAGCTAAGGAGGACAAATATGAGGAGGAGATCAAGGTCTTGACTGACAAGCTGAAGGAGGCTGAGACTCGTGCTGAGTTCGCTGAGAGATCAGTCGCCAAGCTTGAGAAGACCATTGATGATCTGGA
>TCONS_00066128
AGCTCAGCGTTCAGTACAGCACAGACGCTCGAAGCCTCTCTCAGTCCAGTGTTTGGTGCggccacacatacactcacacagcCATGGATGCCATTAAGAAGAAGATGCAGATGCTCAAGCTCGACAAGGAGAACGCCTTGGACAGAGCAGAGCAGGCTGAGACCGACAAGAAAGCAGCTGAGGAGAGGAGCAAGCAGCTCGAGGATGACCTGGTCGCCCTGCAGAAGAAGCTGAAGGCAACCGAGGATGAGTTGGACAAATACTCCGAGGCCCTGAAGGATGCACAGGAGAAACTGGAACTGGCTGAGAAGAAAGCTACCGATGCTGAGGGCGACGTCGCTTCCCTGAACAGACGCATCCAGCTGGTTGAGGAGGAGTTGGATCGCGCTCAGGAGCGTCTGGCCACTGCTCTGCAGAAGCTGGAGGAGGCCGAGAAGGCTGCTGATGAGAGTGAGAGCTCCCCACTCCTTTCTCTCTTTAGTATGTCTTAACTCTTTTGATTTCTTATGTCCTTAATTTATTGTCGAGA
>TCONS_00066129
CGCCTTGGACAGAGCAGAGCAGGCTGAGACCGACAAGAAAGCAGCTGAGGAGAGGAGCAAGCAGCTCGAGGATGACCTGGTCGCCCTGCAGAAGAAGCTGAAGGCAACCGAGGATGAGTTGGACAAATACTCCGAGGCCCTGAAGGATGCACAGGAGAAACTGGAACTGGCTGAGAAGAAAGCTACCGATGCTGAGGGCGACGTCGCTTCCCTGAACAGACGCATCCAGCTGGTTGAGGAGGAGTTGGATCGCGCTCAGGAGCGTCTGGCCACTGCTCTGCAGAAGCTGGAGGAGGCCGAGAAGGCTGCTGATGAGAGTGAGAGTAAGTGCTCTGAGCTGGAGGAGGAGTTGAAAACTGTGACCAACAACATGAAGTCTCTGGAGGCCCAGGCTGAGAAGTACTCAGCTAAGGAGGACAAATATGAGGAGGAGATCAAGGTCTTGACTGACAAGCTGAAGGAGGCTGAGACTCGTGCTGAGTTCGCTGAGAGATCAGTCGCCAAGCTTGAGAAGACCATTGATGATCTGGAGGATGAATTGTATGCCCAGAAACTCAAGTACAAAGCCATCAGCGAGGAGCTGGACCACGCTCTCAACGACATGACCTCCATTTAAATTTTTTACATCTCATCTCTGGCTCCGGGCACCATCTGAGCGGCATCTCCTTCATTTCCTCCATGTTTCTCTTCTTTTCTTTGTTGCCGCTTTTCTCCATCGCACTATTCTCAGTGGGAATGGAGGACTCAGCTCTTTAGTCCCATCATTTGTACAGAAATTTTTAGCTTTCTGTGAAATAAAATTTCCTCCCATC
>TCONS_00066130
TGCACAGGAGAAACTGGAACTGGCTGAGAAGAAAGCTACCGATGCTGAGGGCGACGTCGCTTCCCTGAACAGACGCATCCAGCTGGTTGAGGAGGAGTTGGATCGCGCTCAGGAGCGTCTGGCCACTGCTCTGCAGAAGCTGGAGGAGGCCGAGAAGGCTGCTGATGAGAGTGAGAGAGGCATGAAGGTCATTGAGAACAGGGCCCTGAAGGATGAGGAGAAGATGGAGCTGCAGGAGATCCAGTTGAAGGAGGCTGAGACTCGTGCTGAGTTCGCTGAGAGATCAGTCGCCAAGCTTGAGAAGACCATTGATGATCTGGAGGATGAATTGTATGCCCAGAAACTCAAGTACAAAGCCATCAGCGAGGAGCTGGACCACGCTCTCAACGACATGACCTCCAT
>TCONS_00066131
AGTCACTGGTGGTTGAGATTCACTGTGAACAGTACCGGAGCGCCGCTACGCCACTTATAACCATTGAAATAGACGGTTTAATTCGTGATGGCTGGTACGGCGTATCTAGATGCTGTGAAAAAGAAAATCAGATCCCTGCAAGAACAAGCAGAAGATGCTGAAAGCAGAACACTGAGACTACAGGAGCAGCTCGAGTCCGAGCGCGCGACCAGGCGATCTGCTGAGGGCGACGTCGCTTCCCTGAACAGACGCATCCAGCTGGTTGAGGAGGAGTTGGATCGCGCTCAGGAGCGTCTGGCCACTGCTCTGCAGAAGCTGGAGGAGGCCGAGAAGGCTGCTGATGAGAGTGAGAGAGGCATGAAGGTCATTGAGAACAGGGCCCTGAAGGATGAGGAGAAGATGGAGCTGCAGGAGATCCAGTTGAAGGAGGCCAAGCACATTGCTGAGGAGGCTGATCGCAAGTATGAGGAGGTGGCCCGTAAGCTGGTGATTGTTGAGGGTGAGCTGGAGCGTACTGAGGAGCGCGCTGAGCTCAATGAGGGTAAGTGCTCTGAGCTGGAGGAGGAGTTGAAAACTGTGACCAACAACATGAAGTCTCTGGAGGCCCAGGCTGAGAAGTACTCAGCTAAGGAGGACAAATATGAGGAGGAGATCAAGGTCTTGACTGACAAGCTGAAGGAGGCTGAGACTCGTGCTGAGTTCGCTGAGAGATCAGTCGCCAAGCTTGAGAAGACCATTGATGATCTGGAGG
>TCONS_00066132
CTCTGCAGAAGCTGGAGGAGGCCGAGAAGGCTGCTGATGAGAGTGAGAGAGGCATGAAGGTCATTGAGAACAGGGCCCTGAAGGATGAGGAGAAGATGGAGCTGCAGGAGATCCAGTTGAAGGAGGCCAAGCACATTGCTGAGGAGGCTGATCGCAAGTATGAGGAGGTGGCCCGTAAGCTGGTGATTGTTGAGGGTGAGCTGGAGCGTACTGAGGAGCGCGCTGAGCTCAATGAGGGTAAGTGCTCTGAGCTGGAGGAGGAGTTGAAAACTGTGACCAACAACATGAAGTCTCTGGAGGCCCAGGCTGAGAAGTACTCAGCTAAGGAGGACAAATATGAGGAGGAGATCAAGGTCTTGACTGACAAGCTGAAGGAGGCTGAGACTCGTGCTGAGTTCGCTGAGAGATCAGTCGCCAAGCTTGAGAAGACCATTGATGATCTGGAGGAACCGCTCTATCAACAGCTCCAGAAAAACCGGGTCCTTTC

Function

symbol description
tpma Predicted to enable actin filament binding activity; protein heterodimerization activity; and protein homodimerization activity. Acts upstream of or within myeloid cell development. Predicted to be located in actin cytoskeleton. Predicted to be active in actin filament. Is expressed in adaxial cell; male organism; musculature system; pericardial region; and somite. Human ortholog(s) of this gene implicated in congenital fiber-type disproportion; dilated cardiomyopathy 1Y; familial hypertrophic cardiomyopathy; hypertrophic cardiomyopathy 3; and nemaline myopathy 1. Orthologous to several human genes including TPM1 (tropomyosin 1).

GO:

id name namespace
GO:0006936 muscle contraction biological_process
GO:0007015 actin filament organization biological_process
GO:0061515 myeloid cell development biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005884 actin filament cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component
GO:0042803 protein homodimerization activity molecular_function
GO:0051015 actin filament binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function
GO:0003779 actin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-990415-269 Predicted to enable actin filament binding activity; protein heterodimerization activity; and protein homodimerization activity. Acts upstream of or within myeloid cell development. Predicted to be located in actin cytoskeleton. Predicted to be active in actin filament. Is expressed in adaxial cell; male organism; musculature system; pericardial region; and somite. Human ortholog(s) of this gene implicated in congenital fiber-type disproportion; dilated cardiomyopathy 1Y; familial hypertrophic cardiomyopathy; hypertrophic cardiomyopathy 3; and nemaline myopathy 1. Orthologous to several human genes including TPM1 (tropomyosin 1).

Ensembl:

ensembl_id ENSDARG00000033683

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00066123 False 3089 mRNA 0.41 10 29951997 29962080
TCONS_00066124 False 721 mRNA 0.53 8 29952169 29960202
TCONS_00066125 False 639 mRNA 0.55 6 29952179 29956981
TCONS_00066126 False 753 mRNA 0.54 8 29952180 29957300
TCONS_00066127 False 631 mRNA 0.54 7 29952189 29957298
TCONS_00066128 False 529 mRNA 0.53 4 29952222 29960430
TCONS_00066129 False 812 mRNA 0.51 8 29952355 29960350
TCONS_00066130 False 402 mRNA 0.55 5 29952719 29959275
TCONS_00066131 False 751 mRNA 0.54 7 29954709 29957300
TCONS_00066132 True 487 mRNA 0.53 7 29955368 29960820

Neighbor

gene id symbol gene type direction distance location
XLOC_033807 tln2a coding upstream 5953 29863548 ~ 29946044 (+)
XLOC_033808 BX914219.4 coding upstream 20358 29931525 ~ 29931639 (+)
XLOC_033806 BX914219.2 coding upstream 99831 29850789 ~ 29852166 (+)
XLOC_033805 BX914219.1 coding upstream 114258 29836386 ~ 29837739 (+)
XLOC_033804 BX914219.3 coding upstream 128394 29822214 ~ 29823603 (+)
XLOC_033810 fbxo22 coding downstream 479 29962559 ~ 29970437 (+)
XLOC_033811 isl2b coding downstream 30809 29992889 ~ 29997444 (+)
XLOC_033812 pstpip1b coding downstream 89408 30051488 ~ 30067228 (+)
XLOC_033813 NA coding downstream 110798 30072878 ~ 30076172 (+)
XLOC_033814 NA coding downstream 132729 30094809 ~ 30117108 (+)
XLOC_033803 CR388046.3 non-coding upstream 144294 29806350 ~ 29807703 (+)
XLOC_033821 BX957301.1 non-coding downstream 476825 30438905 ~ 30439021 (+)
XLOC_033822 AL935053.1 non-coding downstream 513756 30475836 ~ 30476382 (+)
XLOC_033836 NA non-coding downstream 1965908 31927988 ~ 31975960 (+)

Expression


Co-expression Network